assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548275.1_ASM154827v1	NZ_AP014945	Caldimicrobium thiodismutans strain TF1	1	709332-709539	1	PILER-CR	no		csa3,cas3,cas4,Cas9_archaeal	Orphan	AAAACGGAGGCGGAATCTATAACTCTGGAACAATCACCAT	40	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,cas4,Cas9_archaeal	NA|293aa|up_6|NZ_AP014945.1_701913_702792_+,NA|299aa|up_3|NZ_AP014945.1_705153_706050_+,NA|353aa|up_2|NZ_AP014945.1_706055_707114_+,NA|151aa|down_0|NZ_AP014945.1_709718_710171_+	NA|226aa|up_9|NZ_AP014945.1_698227_698905_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|371aa|up_8|NZ_AP014945.1_698911_700024_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|426aa|up_7|NZ_AP014945.1_700114_701392_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|293aa|up_6|NZ_AP014945.1_701913_702792_+	NA	NA|318aa|up_5|NZ_AP014945.1_702820_703774_+	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	NA|465aa|up_4|NZ_AP014945.1_703742_705137_+	pfam00656, Peptidase_C14, Caspase domain	NA|299aa|up_3|NZ_AP014945.1_705153_706050_+	NA	NA|353aa|up_2|NZ_AP014945.1_706055_707114_+	NA	NA|281aa|up_1|NZ_AP014945.1_707110_707953_+	sd00006, TPR, Tetratricopeptide repeat	NA|207aa|up_0|NZ_AP014945.1_707965_708586_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|151aa|down_0|NZ_AP014945.1_709718_710171_+	NA	NA|327aa|down_1|NZ_AP014945.1_710584_711565_+	COG5493, COG5493, Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]	NA|384aa|down_2|NZ_AP014945.1_712190_713342_+	smart00933, NurA, NurA nuclease	NA|593aa|down_3|NZ_AP014945.1_713338_715117_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|376aa|down_4|NZ_AP014945.1_715153_716281_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|306aa|down_5|NZ_AP014945.1_718373_719291_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|188aa|down_6|NZ_AP014945.1_719298_719862_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|209aa|down_7|NZ_AP014945.1_719858_720485_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|175aa|down_8|NZ_AP014945.1_720487_721012_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|642aa|down_9|NZ_AP014945.1_721114_723040_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed
GCF_001548275.1_ASM154827v1	NZ_AP014945	Caldimicrobium thiodismutans strain TF1	2	731389-732297	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,cas4,Cas9_archaeal	Orphan	GTTTTGAGCCTACCTATGAGGAATTGAAAC,GTTTTGAGCCTACCTATGAGGAATTGAAAC,GTTTTGAGCCTACCTATGAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	9,13,13	13	Orphan	csa3,cas3,cas4,Cas9_archaeal	NA|152aa|up_0|NZ_AP014945.1_730222_730678_+,NA|203aa|down_0|NZ_AP014945.1_732364_732973_+,NA|117aa|down_2|NZ_AP014945.1_734300_734651_-	NA|175aa|up_9|NZ_AP014945.1_720487_721012_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|642aa|up_8|NZ_AP014945.1_721114_723040_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|209aa|up_7|NZ_AP014945.1_723369_723996_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|222aa|up_6|NZ_AP014945.1_723992_724658_+	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	NA|146aa|up_5|NZ_AP014945.1_724762_725200_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|689aa|up_4|NZ_AP014945.1_725199_727266_+	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein	NA|556aa|up_3|NZ_AP014945.1_727216_728884_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|209aa|up_2|NZ_AP014945.1_728871_729498_+	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated	NA|200aa|up_1|NZ_AP014945.1_729554_730154_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|152aa|up_0|NZ_AP014945.1_730222_730678_+	NA	NA|203aa|down_0|NZ_AP014945.1_732364_732973_+	NA	NA|158aa|down_1|NZ_AP014945.1_733424_733898_+	pfam06271, RDD, RDD family	NA|117aa|down_2|NZ_AP014945.1_734300_734651_-	NA	NA|832aa|down_3|NZ_AP014945.1_734973_737469_-	cd01948, EAL, EAL domain	NA|409aa|down_4|NZ_AP014945.1_737743_738970_-	PRK04135, PRK04135, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|388aa|down_5|NZ_AP014945.1_739138_740302_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|118aa|down_6|NZ_AP014945.1_740546_740900_+	pfam03646, FlaG, FlaG protein	NA|341aa|down_7|NZ_AP014945.1_741107_742130_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|367aa|down_8|NZ_AP014945.1_742133_743234_+	TIGR04070, photo_TT_lyase, spore photoproduct lyase	NA|416aa|down_9|NZ_AP014945.1_743221_744469_+	pfam14537, Cytochrom_c3_2, Cytochrome c3
GCF_001548275.1_ASM154827v1	NZ_AP014945	Caldimicrobium thiodismutans strain TF1	3	733049-733143	2	CRISPRCasFinder	no		csa3,cas3,cas4,Cas9_archaeal	Orphan	GTTTTGAGCCTACCTATGAGGAATTGAAAC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas4,Cas9_archaeal	NA|152aa|up_1|NZ_AP014945.1_730222_730678_+,NA|203aa|up_0|NZ_AP014945.1_732364_732973_+,NA|117aa|down_1|NZ_AP014945.1_734300_734651_-	NA|642aa|up_9|NZ_AP014945.1_721114_723040_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|209aa|up_8|NZ_AP014945.1_723369_723996_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|222aa|up_7|NZ_AP014945.1_723992_724658_+	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	NA|146aa|up_6|NZ_AP014945.1_724762_725200_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|689aa|up_5|NZ_AP014945.1_725199_727266_+	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein	NA|556aa|up_4|NZ_AP014945.1_727216_728884_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|209aa|up_3|NZ_AP014945.1_728871_729498_+	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated	NA|200aa|up_2|NZ_AP014945.1_729554_730154_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|152aa|up_1|NZ_AP014945.1_730222_730678_+	NA	NA|203aa|up_0|NZ_AP014945.1_732364_732973_+	NA	NA|158aa|down_0|NZ_AP014945.1_733424_733898_+	pfam06271, RDD, RDD family	NA|117aa|down_1|NZ_AP014945.1_734300_734651_-	NA	NA|832aa|down_2|NZ_AP014945.1_734973_737469_-	cd01948, EAL, EAL domain	NA|409aa|down_3|NZ_AP014945.1_737743_738970_-	PRK04135, PRK04135, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|388aa|down_4|NZ_AP014945.1_739138_740302_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|118aa|down_5|NZ_AP014945.1_740546_740900_+	pfam03646, FlaG, FlaG protein	NA|341aa|down_6|NZ_AP014945.1_741107_742130_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|367aa|down_7|NZ_AP014945.1_742133_743234_+	TIGR04070, photo_TT_lyase, spore photoproduct lyase	NA|416aa|down_8|NZ_AP014945.1_743221_744469_+	pfam14537, Cytochrom_c3_2, Cytochrome c3	NA|400aa|down_9|NZ_AP014945.1_744465_745665_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]
GCF_001548275.1_ASM154827v1	NZ_AP014945	Caldimicrobium thiodismutans strain TF1	4	1054382-1054862	3,3,2	CRISPRCasFinder,PILER-CR,CRT	no		csa3,cas3,cas4,Cas9_archaeal	Orphan	GGTTGAAACCTGCCCTACTTCAAAAGGGATTGCGAC,GTTGAAACCTGCCCTACTTCAAAAGGGATTGCGAC,GTTGAAACCTGCCCTACTTCAAAAGGGATTGCGAC	36,35,35	0	0	NA	NA	NA:NA:NA	6,5,6	6	Orphan	csa3,cas3,cas4,Cas9_archaeal	NA|139aa|up_6|NZ_AP014945.1_1046007_1046424_+,NA|89aa|up_3|NZ_AP014945.1_1048739_1049006_+,NA|582aa|up_1|NZ_AP014945.1_1049794_1051540_-,NA	NA|137aa|up_9|NZ_AP014945.1_1043701_1044112_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|208aa|up_8|NZ_AP014945.1_1044126_1044750_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|310aa|up_7|NZ_AP014945.1_1045051_1045981_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|139aa|up_6|NZ_AP014945.1_1046007_1046424_+	NA	NA|475aa|up_5|NZ_AP014945.1_1046769_1048194_+	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein	NA|156aa|up_4|NZ_AP014945.1_1048261_1048729_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|89aa|up_3|NZ_AP014945.1_1048739_1049006_+	NA	NA|262aa|up_2|NZ_AP014945.1_1049012_1049798_+	pfam08443, RimK, RimK-like ATP-grasp domain	NA|582aa|up_1|NZ_AP014945.1_1049794_1051540_-	NA	NA|517aa|up_0|NZ_AP014945.1_1052172_1053723_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|515aa|down_0|NZ_AP014945.1_1055267_1056812_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|253aa|down_1|NZ_AP014945.1_1056824_1057583_-	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|279aa|down_2|NZ_AP014945.1_1057579_1058416_-	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|312aa|down_3|NZ_AP014945.1_1058412_1059348_-	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|343aa|down_4|NZ_AP014945.1_1059348_1060377_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|677aa|down_5|NZ_AP014945.1_1060498_1062529_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|436aa|down_6|NZ_AP014945.1_1062660_1063968_+	PRK13352, PRK13352, phosphomethylpyrimidine synthase ThiC	NA|141aa|down_7|NZ_AP014945.1_1063950_1064373_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|125aa|down_8|NZ_AP014945.1_1064306_1064681_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|533aa|down_9|NZ_AP014945.1_1064705_1066304_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001548275.1_ASM154827v1	NZ_AP014945	Caldimicrobium thiodismutans strain TF1	5	1570601-1570694	4	CRISPRCasFinder	no		csa3,cas3,cas4,Cas9_archaeal	Orphan	AAGGGAAAGTTACAAAGATGAAAAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas4,Cas9_archaeal	NA,NA|168aa|down_8|NZ_AP014945.1_1582808_1583312_-	NA|320aa|up_9|NZ_AP014945.1_1560976_1561936_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|336aa|up_8|NZ_AP014945.1_1561948_1562956_-	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|557aa|up_7|NZ_AP014945.1_1563060_1564731_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|358aa|up_6|NZ_AP014945.1_1564717_1565791_+	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|268aa|up_5|NZ_AP014945.1_1565787_1566591_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|307aa|up_4|NZ_AP014945.1_1566617_1567538_+	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF	NA|165aa|up_3|NZ_AP014945.1_1567542_1568037_-	pfam00582, Usp, Universal stress protein family	NA|238aa|up_2|NZ_AP014945.1_1568104_1568818_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|383aa|up_1|NZ_AP014945.1_1568786_1569935_-	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides	NA|91aa|up_0|NZ_AP014945.1_1569938_1570211_-	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|867aa|down_0|NZ_AP014945.1_1571516_1574117_+	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|313aa|down_1|NZ_AP014945.1_1574111_1575050_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|865aa|down_2|NZ_AP014945.1_1575049_1577644_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|148aa|down_3|NZ_AP014945.1_1577802_1578246_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|314aa|down_4|NZ_AP014945.1_1578223_1579165_-	cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine	NA|141aa|down_5|NZ_AP014945.1_1579164_1579587_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|866aa|down_6|NZ_AP014945.1_1579914_1582512_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|76aa|down_7|NZ_AP014945.1_1582504_1582732_+	pfam13192, Thioredoxin_3, Thioredoxin domain	NA|168aa|down_8|NZ_AP014945.1_1582808_1583312_-	NA	NA|581aa|down_9|NZ_AP014945.1_1583578_1585321_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
