The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010330	Mycobacterium tuberculosis strain F28 chromosome, complete genome	4421903	1989449	2042447	4421903	transposase,integrase,protease	Burkholderia_virus(50.0%)	39	1998707:1998766	2045740:2048736
WP_087902221.1|1989449_1990711_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899004.1|1991369_1992515_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_003911638.1|1992740_1993844_+	sulfite oxidase	NA	NA	NA	NA	NA
WP_087902221.1|1997394_1998656_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
1998707:1998766	attL	ACGTCGGTCAAAAATCCCACGTTTGGCACAAGTATCGGTGGCGCGTTGCCAAGTCATTAG	NA	NA	NA	NA
WP_003899024.1|1999086_1999278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901256.1|1999380_2001348_+	PPE family protein	NA	A0A222ZKN7	Mycobacterium_phage	31.7	2.2e-17
WP_087902221.1|2002865_2004126_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003912798.1|2004248_2004374_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_003408734.1|2006102_2006318_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q8W6R2	Burkholderia_virus	45.8	4.5e-09
WP_099171721.1|2006375_2006504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899012.1|2006697_2006967_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_003408743.1|2007034_2007394_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003905649.1|2007574_2009431_+	PE family protein	NA	NA	NA	NA	NA
WP_003904700.1|2009586_2010831_+	amino acid deaminase/aldolase	NA	NA	NA	NA	NA
WP_003911655.1|2010919_2012125_+	M28 family peptidase	NA	NA	NA	NA	NA
WP_003408749.1|2012121_2013408_+	L-gulono-1,4-lactone dehydrogenase	NA	NA	NA	NA	NA
WP_003408753.1|2013596_2013908_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_003408754.1|2013980_2014727_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003899017.1|2014792_2016133_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003408760.1|2016132_2016951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899018.1|2016955_2017516_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003911660.1|2017706_2018921_+	cytochrome P450 Cyp144	NA	NA	NA	NA	NA
WP_003408775.1|2019041_2019491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003408781.1|2019646_2021440_-	DUF4407 domain-containing protein	NA	NA	NA	NA	NA
WP_003408792.1|2021659_2022223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003408795.1|2022262_2024437_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_003899021.1|2024700_2026221_+	type VII secretion system ESX-5 subunit EccB5	NA	V5UN45	Mycobacterium_phage	38.1	4.7e-76
WP_003408799.1|2026217_2030393_+	type VII secretion system ESX-5 FtsK/SpoIIIE family ATPase EccC5	NA	V5UPA0	Mycobacterium_phage	27.0	2.6e-116
WP_003408802.1|2030407_2031589_-	cytochrome P450	NA	NA	NA	NA	NA
WP_003408803.1|2031788_2031992_+	ferredoxin	NA	NA	NA	NA	NA
WP_003901254.1|2032261_2033359_+	type VII secretion system ESX-5 target PPE25	NA	NA	NA	NA	NA
WP_003408976.1|2033437_2033737_+	type VII secretion system ESX-5 target PE18	NA	NA	NA	NA	NA
WP_003408979.1|2033750_2034932_+	type VII secretion system ESX-5 target PPE26	NA	NA	NA	NA	NA
WP_003408805.1|2035385_2036438_+	type VII secretion system ESX-5 target PPE27	NA	NA	NA	NA	NA
WP_003408807.1|2036864_2037164_+	type VII secretion system ESX-5 target PE19	NA	NA	NA	NA	NA
WP_003408840.1|2037654_2037939_+	effector	NA	NA	NA	NA	NA
WP_003408846.1|2038026_2038929_+	ESX secretion-associated protein EspG	NA	NA	NA	NA	NA
WP_003900411.1|2039200_2040712_+	type VII secretion system ESX-5 subunit EccD5	NA	NA	NA	NA	NA
WP_003408854.1|2040689_2042447_+|protease	type VII secretion system ESX-5 serine protease mycosin MycP5	protease	V5UPA7	Mycobacterium_phage	34.3	7.4e-73
2045740:2048736	attR	ACGTCGGTCAAAAATCCCACGTTTGGCACAAGTATCGGTGGCGCGTTGCCAAGTCATTAGGCAATCGAGCGGACTCCCGGGCATGGAAATGCGTGTCTTTCGTTTGTGGGTGTCCGGTATCCAGACAGCATCGCTTGCGCCTCGACTACAGGTTTGCTACTAAAATTCCTATGCGCCATAGTGATTGAGAAGGGCCACGCCCCCTTCGTGTGACGCACGGCGGGCGACGGCGGCGCCGTGCCCGGCATTGGTTGGGTGTCAATGAGGCTTCAAGGATATCTACCAAATTTCCCAGAAATATTTCACGGAGGCCGCAATGGAGCTAGCATTTAATCGGCGTACGGTCAGGCCAATATATCGAAACATGAGAGGAATGATCGATGAGCGTCAAGAGTAAGAACGGTCGTCTCGCCGCTCGGGTACTGGTGGCACTGGCGGCCCTGTTTGCGATGATCGCGCTGACGGGCTCAGCATGTCTGGCAGAGGGTCCCCCGCTTGGCCGCAACCCTCAGGGGGCACCGGCTCCGGTGGGTGGCACTGTGATCGTCGCGCCGATGCACAGCGGCGTCTGACCGCCCCGTTCGGGATCTGTACGCACTTTCATCCGACTGCGCGGTTGTTTGTTAGCGCATCGGATGAAAGTGTGCCGTCTCGGCTGAGGAAGGACCGTCGCGATGCTGCCGAATTTCGCGGTGCTGCCCCCCGAGGTCAATTCGGCGAGGGTGTTCGCCGGTGCGGGGTCGGCGCCGATGTTAGCGGCAGCGGCCGCCTGGGATGATCTAGCCTCCGAGCTGCATTGTGCTGCAATGTCATTCGGGTCGGTTACGTCGGGATTGGTGGTTGGGTGGTGGCAGGGATCGGCGTCGGCGGCGATGGTGGACGCAGCCGCGTCGTACATCGGGTGGCTGAGCACGTCGGCTGCCCACGCCGAGGGCGCGGCCGGTCTGGCTCGGGCCGCGGTATCGGTGTTCGAGGAGGCGCTGGCCGCGACGGTGCATCCGGCGATGGTTGCGGCAAATCGCGCCCAGGTGGCGTCGCTGGTAGCGTCGAACTTGTTTGGGCAGAACGCGCCTGCGATCGCCGCGCTCGAATCCTTGTATGAGTGTATGTGGGCCCAGGATGCAGCGGCCATGGCGGGTTATTACGTTGGGGCTTCGGCGGTGGCCACACAGTTGGCATCGTGGCTGCAACGGCTACAGAGCATCCCCGGCGCCGCCAGTCTTGATGCCCGTCTGCCGAGCTCGGCCGAGGCACCGATGGGAGTCGTCCGCGCGGTCAACAGCGCGATCGCCGCCAATGCGGCTGCGGCACAAACCGTTGGCCTGGTCATGGGAGGCAGCGGCACGCCAATACCGTCGGCCAGATATGTCGAGCTCGCGAACGCGCTGTACATGAGTGGCAGCGTCCCGGGTGTTATCGCGCAGGCGCTCTTCACGCCCCAAGGGCTCTACCCGGTGGTCGTGATCAAGAACCTCACTTTCGATTCCTCGGTGGCGCAGGGTGCCGTCATTCTCGAAAGTGCGATTCGGCAGCAAATTGCCGCCGGCAACAACGTCACCGTCTTCGGCTACTCGCAGAGCGCCACGATCTCGTCACTAGTGATGGCCAATCTTGCGGCTTCGGCCGACCCGCCGTCTCCAGACGAGCTTTCCTTCACGCTGATCGGCAATCCCAACAACCCCAATGGCGGGGTTGCCACCAGGTTCCCGGGGATCTCCTTTCCAAGCTTGGGCGTGACGGCCACCGGGGCCACTCCGCACAATCTGTACCCGACCAAGATCTACACCATCGAATACGACGGCGTCGCCGACTTTCCGCGGTACCCGCTCAACTTTGTGTCGACCCTCAACGCCATTGCCGGCACCTACTACGTGCACTCCAACTACTTCATCCTGACGCCGGAACAAATTGACGCAGCGGTTCCGCTGACCAATACGGTCGGTCCCACGATGACCCAGTACTACATCATTCGCACGGAGAACCTGCCGCTGCTAGAGCCACTGCGATCGGTGCCGATCGTGGGGAACCCACTGGCGAACCTGGTTCAACCAAACTTGAAGGTGATTGTTAACCTGGGCTACGGCGACCCGGCCTATGGTTATTCGACCTCGCCGCCCAATGTTGCGACTCCGTTCGGGTTGTTCCCAGAGGTCAGCCCGGTCGTCATCGCCGACGCTCTCGTCGCCGGGACCCAGCAGGGAATCGGCGATTTCGCCTACGACGTCAGCCACCTCGAACTGCCGTTGCCGGCAGACGGGTCGACGATGCCAAGCACCGCACCGGGCTCGGGTACGCCGGTCCCCCCGCTCTCGATCGACAGCCTGATAGACGACCTGCAGGTGGCTAACCGCAACCTCGCCAACACGATTTCGAAGGTGGCCGCGACGAGCTACGCGACGGTGCTCCCAACCGCCGACATCGCCAATGCGGCGTTGACGATCGTGCCGTCGTACAACATCCACCTTTTTTTGGAGGGCATCCAGCAAGCGCTCAAGGGCGACCCGATGGGACTCGTCAACGCGGTCGGATACCCACTCGCGGCCGACGTGGCACTGTTCACGGCCGCAGGCGGTCTTCAGCTCTTGATCATCATCAGCGCGGGCCGAACGATTGCCAATGACATCTCGGCCATTGTCCCCTGATCGTGTTTTGCGTGAACTTTAAAGCGTTGTGCTGAGGTATGTTCCGCTCGCGTGTGGGGCGGCCCGCGCGACCACCTATGCATGAGCGCCAATGGTCGAGACAACTACCTGCGCGGTCATCGGGCGGCCACCCAGAGGGCATGGTTCTCGGGCTGCTACTGGCTCGCGTGCTTCCATCGAGCGTGAATACATGCCGCCAAATCGGCAGTCGGCGCCGCTGGCGTGCCGCTAGCTGATCACAAAGCGCCGATACCGATGCGGCTGGCCATAGCAATGCCAATGTTGGCGAATAGATCTCACGCGCGGCCCAAGCCAACAGCGAGGTGATGGTGATCATTCTTTACGTTGCGATTAC	NA	NA	NA	NA
>prophage 2
NZ_CP010330	Mycobacterium tuberculosis strain F28 chromosome, complete genome	4421903	2950200	2985431	4421903	head,transposase,integrase,terminase,capsid,protease,tRNA	Tupanvirus(12.5%)	40	2979001:2979028	2989983:2990010
WP_003413486.1|2950200_2952279_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2952387_2952615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2952611_2953997_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2954341_2954842_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2954858_2955299_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003902320.1|2955394_2956123_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2956107_2956461_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2956473_2956899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2956895_2957570_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2957647_2958469_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2958604_2959498_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|2959500_2960319_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2960333_2961515_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2961573_2962005_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2962518_2963760_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_085976157.1|2964174_2964432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2964778_2965903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2965904_2966444_+	archease	NA	NA	NA	NA	NA
WP_003413619.1|2967920_2968202_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2968346_2968832_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2968858_2969113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2969116_2971453_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2971481_2971724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2971724_2972402_+	chloramphenicol phosphotransferase CPT family protein	NA	NA	NA	NA	NA
WP_003413654.1|2972597_2973254_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2973416_2973863_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2974037_2974370_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2974489_2974849_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2974950_2975409_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2975544_2975925_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2975921_2977418_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2977652_2977844_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2979001:2979028	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2979134_2979566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2979562_2980561_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2980574_2981039_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2981171_2982432_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2982459_2982645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009935349.1|2982806_2984246_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2984253_2984787_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003900541.1|2984939_2985431_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	9.4e-18
2989983:2990010	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 3
NZ_CP010330	Mycobacterium tuberculosis strain F28 chromosome, complete genome	4421903	3718417	3806081	4421903	transposase,tRNA,protease	Burkholderia_virus(33.33%)	48	NA	NA
WP_087902221.1|3718417_3719678_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003905037.1|3719733_3721446_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009935306.1|3721378_3722317_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003917150.1|3722325_3723693_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.0	3.1e-18
WP_003417415.1|3723761_3724979_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3725074_3726583_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3726579_3727731_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3727921_3728767_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|3729241_3729682_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3729715_3730585_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3730605_3731616_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003905041.1|3731888_3732533_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3732599_3733829_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3734111_3735461_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3735472_3736612_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3736608_3737340_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_060854276.1|3737348_3746648_-	PPE family protein	NA	NA	NA	NA	NA
WP_009938644.1|3746696_3747713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417619.1|3752909_3753167_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_010886166.1|3753422_3762896_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3763521_3763968_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3764004_3764745_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3765039_3765327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3765663_3776814_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417745.1|3778822_3779212_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3779225_3779519_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3779515_3780361_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3780484_3780760_+	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417760.1|3780756_3781014_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3781055_3782246_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3782362_3782731_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3782727_3783279_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3783285_3783867_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3783847_3784216_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3784193_3784586_-	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003900676.1|3784582_3787213_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003417878.1|3787448_3787913_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003417881.1|3790054_3790699_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003912209.1|3790721_3791132_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003417885.1|3791220_3794496_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.7e-118
WP_003900036.1|3794651_3795992_+	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3796033_3797209_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3797262_3797367_+	PE family protein	NA	NA	NA	NA	NA
WP_003417900.1|3798340_3799768_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3799875_3800529_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3800567_3802073_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3802077_3802968_-	diterpene synthase	NA	NA	NA	NA	NA
WP_087902221.1|3804819_3806081_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
