assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001544015.1_ASM154401v1	NZ_AP014924	Limnochorda pilosa strain HC45	1	245296-248298	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas8u1,cas3,csb2gr5,cas7	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	Unclear	GCTTCAACGGAGCCACCGCTCTCCAGCGGTGGTCAC,GCTTCAACGGAGCCACCGCTCTCCAGCGGTGGTCAC,GCTTCAACGGAGCCACCGCTCTCCAGCGGTGGTCAC	36,36,36	0	0	NA	NA	NA:NA:NA	41,41,24	41	Unclear	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	NA,cas8u1|316aa|down_0|NZ_AP014924.1_248571_249519_-,NA|53aa|down_5|NZ_AP014924.1_256300_256459_+,NA|127aa|down_8|NZ_AP014924.1_258468_258849_-	NA|270aa|up_9|NZ_AP014924.1_233461_234271_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|388aa|up_8|NZ_AP014924.1_234325_235489_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|399aa|up_7|NZ_AP014924.1_235485_236682_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|404aa|up_6|NZ_AP014924.1_236678_237890_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|265aa|up_5|NZ_AP014924.1_237981_238776_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|323aa|up_4|NZ_AP014924.1_238796_239765_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|704aa|up_3|NZ_AP014924.1_239864_241976_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|388aa|up_2|NZ_AP014924.1_242066_243230_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|378aa|up_1|NZ_AP014924.1_243234_244368_+	cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like	NA|249aa|up_0|NZ_AP014924.1_244395_245142_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	cas8u1|316aa|down_0|NZ_AP014924.1_248571_249519_-	NA	cas3|988aa|down_1|NZ_AP014924.1_249515_252479_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|481aa|down_2|NZ_AP014924.1_252475_253918_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|419aa|down_3|NZ_AP014924.1_253923_255180_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|144aa|down_4|NZ_AP014924.1_255515_255947_-	pfam14104, DUF4277, Domain of unknown function (DUF4277)	NA|53aa|down_5|NZ_AP014924.1_256300_256459_+	NA	NA|92aa|down_6|NZ_AP014924.1_256508_256784_-	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|416aa|down_7|NZ_AP014924.1_256846_258094_-	PRK07591, PRK07591, threonine synthase; Validated	NA|127aa|down_8|NZ_AP014924.1_258468_258849_-	NA	NA|281aa|down_9|NZ_AP014924.1_258992_259835_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
GCF_001544015.1_ASM154401v1	NZ_AP014924	Limnochorda pilosa strain HC45	2	1546071-1550641	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	Type I-E	GTGATCCCCACGCGCGTGGGGGTGAAC,GTGATCCCCACGCGCGTGGGGGTGAACCG,GTGATCCCCACGCGCGTNGGGGGTGAACCG	27,29,30	0	0	NA	NA	I-E,II-B:I-E,II-B:NA	73,73,74	74	TypeI-E	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	NA|174aa|up_9|NZ_AP014924.1_1531852_1532374_+,NA|422aa|up_4|NZ_AP014924.1_1538080_1539346_+,NA	NA|174aa|up_9|NZ_AP014924.1_1531852_1532374_+	NA	NA|338aa|up_8|NZ_AP014924.1_1532678_1533692_+	cd00548, NrfA-like, cytochrome c nitrite reductase and similar proteins	NA|201aa|up_7|NZ_AP014924.1_1534053_1534656_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|764aa|up_6|NZ_AP014924.1_1534903_1537195_+	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|265aa|up_5|NZ_AP014924.1_1537254_1538049_+	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB	NA|422aa|up_4|NZ_AP014924.1_1538080_1539346_+	NA	NA|534aa|up_3|NZ_AP014924.1_1539565_1541167_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|NZ_AP014924.1_1541222_1541954_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|137aa|up_1|NZ_AP014924.1_1542031_1542442_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|909aa|up_0|NZ_AP014924.1_1542877_1545604_-	PRK09277, PRK09277, aconitate hydratase AcnA	cas3|944aa|down_0|NZ_AP014924.1_1550936_1553768_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|525aa|down_1|NZ_AP014924.1_1553835_1555410_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|206aa|down_2|NZ_AP014924.1_1555387_1556005_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|388aa|down_3|NZ_AP014924.1_1555994_1557158_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|252aa|down_4|NZ_AP014924.1_1557161_1557917_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|246aa|down_5|NZ_AP014924.1_1557898_1558636_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|318aa|down_6|NZ_AP014924.1_1559022_1559976_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|92aa|down_7|NZ_AP014924.1_1559972_1560248_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|499aa|down_8|NZ_AP014924.1_1560800_1562297_-	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	NA|947aa|down_9|NZ_AP014924.1_1562339_1565180_-	pfam12770, CHAT, CHAT domain
GCF_001544015.1_ASM154401v1	NZ_AP014924	Limnochorda pilosa strain HC45	3	1558738-1558824	3	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	Type I-E	TCCCCACGCGTGTGGGGGTGAACCGT	26	0	0	NA	NA	I-E,II-B	1	1	TypeI-E	csa3,DEDDh,cas8u1,cas3,csb2gr5,cas7,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DinG,WYL	NA,NA|267aa|down_4|NZ_AP014924.1_1565163_1565964_-	NA|534aa|up_9|NZ_AP014924.1_1539565_1541167_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|244aa|up_8|NZ_AP014924.1_1541222_1541954_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|137aa|up_7|NZ_AP014924.1_1542031_1542442_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|909aa|up_6|NZ_AP014924.1_1542877_1545604_-	PRK09277, PRK09277, aconitate hydratase AcnA	cas3|944aa|up_5|NZ_AP014924.1_1550936_1553768_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|525aa|up_4|NZ_AP014924.1_1553835_1555410_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|206aa|up_3|NZ_AP014924.1_1555387_1556005_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|388aa|up_2|NZ_AP014924.1_1555994_1557158_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|252aa|up_1|NZ_AP014924.1_1557161_1557917_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|246aa|up_0|NZ_AP014924.1_1557898_1558636_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|318aa|down_0|NZ_AP014924.1_1559022_1559976_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|92aa|down_1|NZ_AP014924.1_1559972_1560248_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|499aa|down_2|NZ_AP014924.1_1560800_1562297_-	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	NA|947aa|down_3|NZ_AP014924.1_1562339_1565180_-	pfam12770, CHAT, CHAT domain	NA|267aa|down_4|NZ_AP014924.1_1565163_1565964_-	NA	NA|204aa|down_5|NZ_AP014924.1_1566047_1566659_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|425aa|down_6|NZ_AP014924.1_1566941_1568216_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|162aa|down_7|NZ_AP014924.1_1568693_1569179_+	pfam17099, TrpP, Tryptophan transporter TrpP	NA|607aa|down_8|NZ_AP014924.1_1569182_1571003_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|267aa|down_9|NZ_AP014924.1_1570956_1571757_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
