The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP014924	Limnochorda pilosa strain HC45	3817036	982314	1042199	3817036	integrase,transposase	Pithovirus(16.67%)	56	1025209:1025224	1047615:1047630
WP_068134850.1|982314_983589_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_068134852.1|984117_984861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134854.1|984845_985592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134855.1|985588_986443_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.2	8.1e-17
WP_068134857.1|986439_987054_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_068134860.1|987207_988236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068141511.1|989066_989576_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_158509550.1|989896_990046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134870.1|990287_992549_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_082726567.1|992946_994548_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_082725848.1|994544_995606_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_068134872.1|995608_996481_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_068134875.1|996477_997545_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.5	1.8e-10
WP_068134877.1|997528_998329_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	24.8	1.8e-05
WP_068134879.1|998333_1000022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068134881.1|1001826_1002684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134883.1|1003129_1003534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158509551.1|1003756_1004188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158509552.1|1004601_1005102_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_082725850.1|1005225_1006113_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_082725851.1|1006242_1007019_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_082725852.1|1007484_1007895_-	RidA family protein	NA	NA	NA	NA	NA
WP_068134886.1|1008230_1008446_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_068134888.1|1008709_1009264_-	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_082725853.1|1009893_1010433_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_068134886.1|1010757_1010973_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_068134894.1|1011250_1011649_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_068134896.1|1012054_1012570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158509553.1|1012657_1013209_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_082726568.1|1013423_1013723_-	VOC family protein	NA	NA	NA	NA	NA
WP_082726568.1|1013979_1014279_-	VOC family protein	NA	NA	NA	NA	NA
WP_082725855.1|1015318_1015810_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_144440324.1|1015949_1016471_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_068134900.1|1016577_1017390_-	TIGR02391 family protein	NA	NA	NA	NA	NA
WP_068134903.1|1018549_1018798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082725856.1|1019084_1019255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134906.1|1019426_1020794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068134908.1|1020797_1021181_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_068134912.1|1021772_1022246_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_068134914.1|1022491_1022887_-	VOC family protein	NA	NA	NA	NA	NA
WP_068134917.1|1022966_1023842_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_068134920.1|1024162_1024444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082726569.1|1024513_1024846_-	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_068134922.1|1024939_1025617_-	ATP-binding protein	NA	NA	NA	NA	NA
1025209:1025224	attL	GGGGCGTCTCCGGGCG	NA	NA	NA	NA
WP_158509554.1|1026049_1026610_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_082725858.1|1027170_1027368_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_068134926.1|1027364_1027580_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_068134928.1|1028634_1030296_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_068134931.1|1030581_1031886_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	31.3	3.6e-40
WP_068134933.1|1032631_1033753_-	PLP-dependent transferase	NA	NA	NA	NA	NA
WP_068134936.1|1034347_1036942_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	29.0	2.3e-30
WP_068134938.1|1037318_1038980_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_144440325.1|1039331_1040309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082725859.1|1040490_1040844_+	addiction module protein	NA	NA	NA	NA	NA
WP_144440601.1|1040849_1041026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068141518.1|1041224_1042199_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	41.4	1.6e-61
1047615:1047630	attR	CGCCCGGAGACGCCCC	NA	NA	NA	NA
>prophage 2
NZ_AP014924	Limnochorda pilosa strain HC45	3817036	1848231	1854507	3817036	integrase	Cyanophage(16.67%)	9	1850467:1850482	1856537:1856552
WP_068136664.1|1848231_1848633_+	S-adenosylmethionine decarboxylase proenzyme	NA	A0A1D7SEZ2	Cyanophage	42.2	1.2e-18
WP_082726037.1|1848818_1849481_+	RNA polymerase sporulation sigma factor SigH	NA	A0A218KDH9	Bacillus_phage	43.1	1.4e-05
WP_068141768.1|1849583_1850228_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	48.4	1.7e-19
WP_082726038.1|1850284_1851175_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	45.3	7.3e-45
1850467:1850482	attL	GATCGTCGCCTACGCG	NA	NA	NA	NA
WP_068136670.1|1851204_1851423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068136673.1|1851524_1851911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068136676.1|1852236_1852842_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.3	7.5e-17
WP_082726609.1|1853146_1853533_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_068136682.1|1853541_1854507_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	32.6	8.3e-18
1856537:1856552	attR	GATCGTCGCCTACGCG	NA	NA	NA	NA
>prophage 4
NZ_AP014924	Limnochorda pilosa strain HC45	3817036	2654440	2711158	3817036	protease,tRNA,coat	Bacillus_phage(30.77%)	59	NA	NA
WP_068138530.1|2654440_2656879_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_082726253.1|2656875_2657955_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	32.3	6.4e-27
WP_082726254.1|2658271_2658367_-	YqzL family protein	NA	NA	NA	NA	NA
WP_068141959.1|2658631_2659069_+	small multi-drug export protein	NA	NA	NA	NA	NA
WP_144440461.1|2659052_2659751_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_068138536.1|2659852_2660536_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_068138539.1|2660661_2661018_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_068138542.1|2661093_2661297_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_068138544.1|2661326_2661875_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.6	1.2e-10
WP_144440632.1|2662225_2664127_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.8	2.1e-137
WP_144440462.1|2664541_2665141_-	DUF445 family protein	NA	NA	NA	NA	NA
WP_068138552.1|2665988_2666780_+	Ku protein	NA	A0A218M9C0	Mycobacterium_phage	34.0	7.7e-30
WP_068138555.1|2666779_2667742_+	hypothetical protein	NA	A0A2H4JD86	uncultured_Caudovirales_phage	31.7	5.9e-32
WP_068138558.1|2667728_2668700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068138562.1|2668830_2670834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068138564.1|2670861_2671050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082726256.1|2671172_2671736_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_068138571.1|2671716_2672196_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_144440463.1|2673583_2674897_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_068138579.1|2674893_2676000_-	sporulation integral membrane protein YtvI	NA	NA	NA	NA	NA
WP_068138582.1|2676137_2677223_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_158509670.1|2677371_2678466_+	methyltransferase domain-containing protein	NA	A0A1J0MC50	Streptomyces_phage	34.8	6.1e-25
WP_068138589.1|2678576_2679365_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XAL9	Bacillus_phage	47.5	7.0e-23
WP_082726260.1|2679467_2680841_-	fructose 1,6-bisphosphatase	NA	NA	NA	NA	NA
WP_082726261.1|2680982_2682329_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_068138596.1|2682341_2683478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068138599.1|2683593_2685552_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_068138602.1|2685548_2685926_-	RidA family protein	NA	NA	NA	NA	NA
WP_068138606.1|2686088_2688473_-	DUF4968 domain-containing protein	NA	NA	NA	NA	NA
WP_068138608.1|2688956_2690234_+	MFS transporter	NA	NA	NA	NA	NA
WP_068138612.1|2690181_2690388_-	small, acid-soluble spore protein, alpha/beta type	NA	NA	NA	NA	NA
WP_082726639.1|2690416_2690731_-	alpha/beta-type small acid-soluble spore protein	NA	A0A1P8CX76	Bacillus_phage	41.9	6.9e-06
WP_173652474.1|2690829_2691144_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	47.4	4.6e-18
WP_068138617.1|2691393_2691636_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_082726263.1|2691662_2692451_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_068138621.1|2692618_2693590_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_068138624.1|2693651_2694641_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	49.7	4.4e-75
WP_068138627.1|2694750_2695386_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_068138630.1|2695460_2695724_-	YggT family protein	NA	NA	NA	NA	NA
WP_082726265.1|2695736_2696585_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	35.1	7.8e-28
WP_082726640.1|2696618_2696999_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_082726641.1|2697039_2697729_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_144440464.1|2697777_2699025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068138639.1|2699021_2699846_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_068138642.1|2699940_2701305_-	germination protein YpeB	NA	NA	NA	NA	NA
WP_082726266.1|2701383_2702109_-	spore cortex-lytic enzyme	NA	A0A172JHR8	Bacillus_phage	47.8	7.8e-21
WP_068138645.1|2702330_2702981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068138649.1|2703056_2703512_-	hypothetical protein	NA	A0A0E3T7R5	Bacillus_phage	45.2	5.4e-20
WP_158509671.1|2703501_2703642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068138650.1|2703931_2704645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144440465.1|2704653_2704878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158509672.1|2705115_2705325_-	YlzJ-like family protein	NA	NA	NA	NA	NA
WP_082726268.1|2705329_2706163_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_068138661.1|2706238_2706823_-|coat	outer spore coat protein CotE	coat	NA	NA	NA	NA
WP_068138664.1|2706958_2707168_-	amphi-Trp domain-containing protein	NA	NA	NA	NA	NA
WP_068138667.1|2707292_2708363_+|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_068138670.1|2708362_2709373_+|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_068138673.1|2709345_2710515_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_068138676.1|2710642_2711158_-|coat	outer spore coat protein CotE	coat	NA	NA	NA	NA
>prophage 5
NZ_AP014924	Limnochorda pilosa strain HC45	3817036	2869832	2930877	3817036	protease,integrase,transposase,tRNA	Clostridium_phage(25.0%)	59	2895651:2895670	2926728:2926747
WP_068139054.1|2869832_2870195_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_144440633.1|2870449_2871544_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_068139059.1|2871650_2872529_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_082726298.1|2872635_2873658_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_068139062.1|2873644_2874418_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.8	7.8e-11
WP_068139065.1|2874414_2875125_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.8	5.7e-08
WP_068139070.1|2875169_2876111_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_068139073.1|2876422_2877331_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_068139077.1|2877330_2877900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068139082.1|2878057_2878366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068139085.1|2878362_2878797_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_068139089.1|2878855_2879059_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0A7S1E5	Clostridium_phage	45.8	5.8e-06
WP_068139092.1|2879055_2879283_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_068139096.1|2879335_2879614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068139099.1|2879610_2880312_-	PspA/IM30 family protein	NA	NA	NA	NA	NA
WP_082726300.1|2881194_2881329_-	DUF4402 domain-containing protein	NA	NA	NA	NA	NA
WP_144440481.1|2881386_2883165_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_068139104.1|2883406_2884504_-	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
WP_068139108.1|2885357_2886014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_068139111.1|2886058_2886844_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	1.1e-36
WP_068139113.1|2886894_2888229_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_068139116.1|2888269_2889556_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_068139118.1|2889857_2890076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158509681.1|2890097_2890622_-	redoxin domain-containing protein	NA	NA	NA	NA	NA
WP_144440483.1|2891071_2892370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068139123.1|2892447_2893815_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_068139127.1|2893839_2895219_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_068139130.1|2895299_2896655_-	ABC transporter permease	NA	NA	NA	NA	NA
2895651:2895670	attL	GTTCAGGCTGGCCACCAGCA	NA	NA	NA	NA
WP_068139134.1|2896681_2897161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144440484.1|2897429_2898068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158509682.1|2898036_2898786_-	ATP-binding cassette domain-containing protein	NA	M1H3A1	Paramecium_bursaria_Chlorella_virus	25.0	5.6e-06
WP_068139144.1|2901003_2902032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068139147.1|2902191_2902674_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_068139150.1|2902783_2905150_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_082726305.1|2905401_2906172_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_082726649.1|2906174_2907284_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
WP_082726306.1|2907456_2909031_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_068139159.1|2909614_2910919_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	31.0	1.0e-39
WP_158509683.1|2910998_2912177_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_144440485.1|2912533_2912833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144440486.1|2912742_2913078_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_082726650.1|2913934_2914894_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_068139171.1|2914918_2916157_-	CoA transferase	NA	NA	NA	NA	NA
WP_068139174.1|2916215_2917403_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	41.5	5.2e-22
WP_068139179.1|2917395_2919123_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_068139182.1|2919237_2920353_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_158509684.1|2920479_2921223_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_068139189.1|2921517_2921889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068139193.1|2921888_2922254_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_082726651.1|2922273_2922501_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A090EUH1	Clostridium_phage	39.0	1.8e-08
WP_068139195.1|2923162_2924533_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_158509685.1|2924508_2925216_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_068139201.1|2925328_2925706_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_068139204.1|2925689_2927024_-	LCP family protein	NA	NA	NA	NA	NA
2926728:2926747	attR	GTTCAGGCTGGCCACCAGCA	NA	NA	NA	NA
WP_068139206.1|2927071_2927611_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_082726309.1|2927640_2928324_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_068139208.1|2928365_2929652_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_068139210.1|2929783_2930056_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_144440489.1|2930055_2930877_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
