assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001543245.1_ASM154324v1	NZ_CP014163	Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome	1	674833-675452	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	TCCCAAGTAGCTTAACGCCGCCACTTGAGCTACTTCAG,TCCCAAGTAGCTTAACGCCNCCACTTGAGCTACTTCAG,TCCCAAGTAGCTTAACGCCGCCACTTGAGCTACTTCAG	38,38,38	0	0	NA	NA	NA:NA:NA	6,8,4	8	Orphan	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	NA,NA	NA|619aa|up_9|NZ_CP014163.1_662484_664341_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|263aa|up_8|NZ_CP014163.1_664696_665485_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|94aa|up_7|NZ_CP014163.1_665744_666026_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|195aa|up_6|NZ_CP014163.1_666101_666686_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|305aa|up_5|NZ_CP014163.1_666820_667735_+	pfam08378, NERD, Nuclease-related domain	NA|471aa|up_4|NZ_CP014163.1_668335_669748_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|546aa|up_3|NZ_CP014163.1_669755_671393_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|326aa|up_2|NZ_CP014163.1_671481_672459_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|368aa|up_1|NZ_CP014163.1_672461_673565_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|190aa|up_0|NZ_CP014163.1_674043_674613_+	PRK00150, def, peptide deformylase; Reviewed	NA|400aa|down_0|NZ_CP014163.1_675646_676846_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|2372aa|down_1|NZ_CP014163.1_677033_684149_-	pfam07501, G5, G5 domain	NA|2139aa|down_2|NZ_CP014163.1_684448_690865_-	TIGR01168, M_protein_serotype, Gram-positive signal peptide, YSIRK family	NA|420aa|down_3|NZ_CP014163.1_691194_692454_-	PRK08639, PRK08639, threonine dehydratase; Validated	NA|337aa|down_4|NZ_CP014163.1_692667_693678_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|85aa|down_5|NZ_CP014163.1_693736_693991_-	cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)	NA|567aa|down_6|NZ_CP014163.1_693990_695691_-	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type	NA|272aa|down_7|NZ_CP014163.1_696044_696860_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|497aa|down_8|NZ_CP014163.1_696987_698478_-	PRK09225, PRK09225, threonine synthase; Validated	NA|392aa|down_9|NZ_CP014163.1_699091_700267_-	pfam00872, Transposase_mut, Transposase, Mutator family
GCF_001543245.1_ASM154324v1	NZ_CP014163	Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome	2	1052370-1052478	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	AAAAAATATTTCAAAAAGTTCTTGACA	27	1	1	1052397-1052451	NZ_CP014163.1_868320-868266	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	NA,NA|397aa|down_6|NZ_CP014163.1_1065101_1066292_+	NA|240aa|up_9|NZ_CP014163.1_1043625_1044345_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|257aa|up_8|NZ_CP014163.1_1044509_1045280_+	pfam13614, AAA_31, AAA domain	NA|314aa|up_7|NZ_CP014163.1_1045263_1046205_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|69aa|up_6|NZ_CP014163.1_1046219_1046426_+	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|366aa|up_5|NZ_CP014163.1_1046448_1047546_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|236aa|up_4|NZ_CP014163.1_1047554_1048262_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|232aa|up_3|NZ_CP014163.1_1048423_1049119_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|389aa|up_2|NZ_CP014163.1_1049149_1050316_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|463aa|up_1|NZ_CP014163.1_1050308_1051697_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|174aa|up_0|NZ_CP014163.1_1051702_1052224_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|441aa|down_0|NZ_CP014163.1_1058271_1059594_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|371aa|down_1|NZ_CP014163.1_1059691_1060804_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|95aa|down_2|NZ_CP014163.1_1060989_1061274_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|143aa|down_3|NZ_CP014163.1_1061350_1061779_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|366aa|down_4|NZ_CP014163.1_1062857_1063955_+	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein	NA|309aa|down_5|NZ_CP014163.1_1063974_1064901_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|397aa|down_6|NZ_CP014163.1_1065101_1066292_+	NA	NA|189aa|down_7|NZ_CP014163.1_1066492_1067059_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|193aa|down_8|NZ_CP014163.1_1067238_1067817_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|69aa|down_9|NZ_CP014163.1_1067834_1068041_+	pfam10031, DUF2273, Small integral membrane protein (DUF2273)
GCF_001543245.1_ASM154324v1	NZ_CP014163	Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome	3	1490383-1490491	3	CRISPRCasFinder	no	DinG	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Type IV-A	AAAAAATATTTCAAAAAGTTCTTGACA	27	1	1	1490410-1490464	NZ_CP014163.1_868320-868266	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	NA,NA|113aa|down_6|NZ_CP014163.1_1504640_1504979_+	NA|165aa|up_9|NZ_CP014163.1_1481951_1482446_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|456aa|up_8|NZ_CP014163.1_1482551_1483919_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|222aa|up_7|NZ_CP014163.1_1483922_1484588_+	pfam06265, DUF1027, Protein of unknown function (DUF1027)	NA|272aa|up_6|NZ_CP014163.1_1484589_1485405_+	COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]	NA|212aa|up_5|NZ_CP014163.1_1485380_1486016_+	pfam07314, DUF1461, Protein of unknown function (DUF1461)	NA|334aa|up_4|NZ_CP014163.1_1486033_1487035_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|162aa|up_3|NZ_CP014163.1_1487054_1487540_-	pfam02681, DUF212, Divergent PAP2 family	NA|195aa|up_2|NZ_CP014163.1_1487704_1488289_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|133aa|up_1|NZ_CP014163.1_1488297_1488696_+	PRK08059, PRK08059, general stress protein 13; Validated	NA|449aa|up_0|NZ_CP014163.1_1488695_1490042_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|98aa|down_0|NZ_CP014163.1_1497681_1497975_+	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional	NA|298aa|down_1|NZ_CP014163.1_1497971_1498865_+	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit	NA|514aa|down_2|NZ_CP014163.1_1498861_1500403_+	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion]	NA|549aa|down_3|NZ_CP014163.1_1500488_1502135_+	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG	NA|249aa|down_4|NZ_CP014163.1_1502182_1502929_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|448aa|down_5|NZ_CP014163.1_1503015_1504359_-	COG2851, CitM, H+/citrate symporter [Energy production and conversion]	NA|113aa|down_6|NZ_CP014163.1_1504640_1504979_+	NA	NA|140aa|down_7|NZ_CP014163.1_1504994_1505414_+	PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated	NA|372aa|down_8|NZ_CP014163.1_1505430_1506546_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|336aa|down_9|NZ_CP014163.1_1506744_1507752_+	cd02169, Citrate_lyase_ligase, Citrate lyase ligase
GCF_001543245.1_ASM154324v1	NZ_CP014163	Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome	4	1754503-1754973	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	TGAAGTAGCTTAAGTGGTGGAGTTAAGCTACTTG	34	0	0	NA	NA	NA	6	6	Orphan	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	NA|233aa|up_7|NZ_CP014163.1_1746203_1746902_+,NA|103aa|down_3|NZ_CP014163.1_1759982_1760291_+,NA|347aa|down_4|NZ_CP014163.1_1760439_1761480_-,NA|196aa|down_5|NZ_CP014163.1_1761856_1762444_+	NA|609aa|up_9|NZ_CP014163.1_1741312_1743139_+	COG1401, McrB, GTPase subunit of restriction endonuclease [Defense mechanisms]	NA|1015aa|up_8|NZ_CP014163.1_1743113_1746158_+	pfam15135, UPF0515, Uncharacterized protein UPF0515	NA|233aa|up_7|NZ_CP014163.1_1746203_1746902_+	NA	NA|302aa|up_6|NZ_CP014163.1_1747130_1748036_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|137aa|up_5|NZ_CP014163.1_1748126_1748537_+	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit	NA|134aa|up_4|NZ_CP014163.1_1748545_1748947_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|435aa|up_3|NZ_CP014163.1_1749482_1750787_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|386aa|up_2|NZ_CP014163.1_1751396_1752554_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|307aa|up_1|NZ_CP014163.1_1752583_1753504_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|198aa|up_0|NZ_CP014163.1_1753670_1754264_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|281aa|down_0|NZ_CP014163.1_1755573_1756416_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|291aa|down_1|NZ_CP014163.1_1756627_1757500_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|392aa|down_2|NZ_CP014163.1_1757969_1759145_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|103aa|down_3|NZ_CP014163.1_1759982_1760291_+	NA	NA|347aa|down_4|NZ_CP014163.1_1760439_1761480_-	NA	NA|196aa|down_5|NZ_CP014163.1_1761856_1762444_+	NA	NA|501aa|down_6|NZ_CP014163.1_1763269_1764772_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|565aa|down_7|NZ_CP014163.1_1764859_1766554_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|327aa|down_8|NZ_CP014163.1_1767780_1768761_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|433aa|down_9|NZ_CP014163.1_1768769_1770068_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA
GCF_001543245.1_ASM154324v1	NZ_CP014163	Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome	5	1788934-1790485	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Type I-E	CTTCTTCCCGCATACGCGGGGGTGATCC,CTTCTTCCCGCATACGCGGGGGTGATCC,CTTCTTCCCGCATACGCGGGGGTGATCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	24,25,25	25	TypeI-E	DEDDh,csa3,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	NA,NA|56aa|down_0|NZ_CP014163.1_1790614_1790782_+,NA|197aa|down_1|NZ_CP014163.1_1790782_1791373_+,NA|79aa|down_3|NZ_CP014163.1_1792452_1792689_-	NA|52aa|up_9|NZ_CP014163.1_1778816_1778972_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|56aa|up_8|NZ_CP014163.1_1779329_1779497_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|921aa|up_7|NZ_CP014163.1_1779635_1782398_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|562aa|up_6|NZ_CP014163.1_1782384_1784070_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|199aa|up_5|NZ_CP014163.1_1784062_1784659_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_4|NZ_CP014163.1_1784642_1785728_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|233aa|up_3|NZ_CP014163.1_1785729_1786428_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|214aa|up_2|NZ_CP014163.1_1786429_1787071_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|314aa|up_1|NZ_CP014163.1_1787072_1788014_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|304aa|up_0|NZ_CP014163.1_1788020_1788932_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|56aa|down_0|NZ_CP014163.1_1790614_1790782_+	NA	NA|197aa|down_1|NZ_CP014163.1_1790782_1791373_+	NA	NA|150aa|down_2|NZ_CP014163.1_1791990_1792440_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|79aa|down_3|NZ_CP014163.1_1792452_1792689_-	NA	NA|64aa|down_4|NZ_CP014163.1_1792719_1792911_-	pfam09169, BRCA-2_helical, BRCA2, helical	NA|348aa|down_5|NZ_CP014163.1_1793153_1794197_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|90aa|down_6|NZ_CP014163.1_1794183_1794453_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|186aa|down_7|NZ_CP014163.1_1794386_1794944_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|520aa|down_8|NZ_CP014163.1_1794946_1796506_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|455aa|down_9|NZ_CP014163.1_1796607_1797972_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component
