assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001543145.1_ASM154314v1	NZ_CP014160	Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome	1	366282-366392	1	CRISPRCasFinder	no		DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Orphan	GTTTCTCTCCATGTTACAGACAAAACG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA	NA|344aa|up_9|NZ_CP014160.1_350744_351776_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|277aa|up_8|NZ_CP014160.1_351827_352658_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|1201aa|up_7|NZ_CP014160.1_352635_356238_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|235aa|up_6|NZ_CP014160.1_356251_356956_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|84aa|up_5|NZ_CP014160.1_357750_358002_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|342aa|up_4|NZ_CP014160.1_358003_359029_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|682aa|up_3|NZ_CP014160.1_359078_361124_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|340aa|up_2|NZ_CP014160.1_361173_362193_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|546aa|up_1|NZ_CP014160.1_363382_365020_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|121aa|up_0|NZ_CP014160.1_365074_365437_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|646aa|down_0|NZ_CP014160.1_366581_368519_-	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|63aa|down_1|NZ_CP014160.1_369171_369360_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|223aa|down_2|NZ_CP014160.1_369439_370108_-	cd07995, TPK, Thiamine pyrophosphokinase	NA|219aa|down_3|NZ_CP014160.1_370107_370764_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|297aa|down_4|NZ_CP014160.1_370783_371674_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|742aa|down_5|NZ_CP014160.1_371666_373892_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|254aa|down_6|NZ_CP014160.1_373869_374631_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|482aa|down_7|NZ_CP014160.1_374631_376077_-	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|319aa|down_8|NZ_CP014160.1_375997_376954_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|805aa|down_9|NZ_CP014160.1_376962_379377_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated
GCF_001543145.1_ASM154314v1	NZ_CP014160	Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome	2	379877-379985	2	CRISPRCasFinder	no		DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Orphan	TGAGCGTTGCCAAGCCACACTTGAGGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA|130aa|down_2|NZ_CP014160.1_381167_381557_+	NA|646aa|up_9|NZ_CP014160.1_366581_368519_-	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|63aa|up_8|NZ_CP014160.1_369171_369360_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|223aa|up_7|NZ_CP014160.1_369439_370108_-	cd07995, TPK, Thiamine pyrophosphokinase	NA|219aa|up_6|NZ_CP014160.1_370107_370764_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|297aa|up_5|NZ_CP014160.1_370783_371674_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|742aa|up_4|NZ_CP014160.1_371666_373892_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|254aa|up_3|NZ_CP014160.1_373869_374631_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|482aa|up_2|NZ_CP014160.1_374631_376077_-	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|319aa|up_1|NZ_CP014160.1_375997_376954_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|805aa|up_0|NZ_CP014160.1_376962_379377_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|69aa|down_0|NZ_CP014160.1_380081_380288_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|211aa|down_1|NZ_CP014160.1_380287_380920_-	PRK00300, gmk, guanylate kinase; Provisional	NA|130aa|down_2|NZ_CP014160.1_381167_381557_+	NA	NA|493aa|down_3|NZ_CP014160.1_381975_383454_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|200aa|down_4|NZ_CP014160.1_384041_384641_-	pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ)	NA|568aa|down_5|NZ_CP014160.1_384644_386348_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|348aa|down_6|NZ_CP014160.1_386802_387846_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|820aa|down_7|NZ_CP014160.1_388348_390808_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|708aa|down_8|NZ_CP014160.1_392044_394168_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|90aa|down_9|NZ_CP014160.1_395409_395679_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed
GCF_001543145.1_ASM154314v1	NZ_CP014160	Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome	3	590480-591851	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Orphan	GGATCACCCCCGCGTGTGCGGGAAGAAG,GGATCACCCCCGCGTGTGCGGGAAGAAG,GGATCACCCCCGCGTGTGCGGGAAGAAG	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	22,22,21	22	Orphan	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA|156aa|up_1|NZ_CP014160.1_589562_590030_-,NA	NA|186aa|up_9|NZ_CP014160.1_582905_583463_+	cd02140, Frm2-like, nitroreductase family protein	NA|247aa|up_8|NZ_CP014160.1_583753_584494_+	PRK10566, PRK10566, esterase; Provisional	NA|161aa|up_7|NZ_CP014160.1_584575_585058_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|281aa|up_6|NZ_CP014160.1_585249_586092_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|310aa|up_5|NZ_CP014160.1_586333_587263_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|255aa|up_4|NZ_CP014160.1_587288_588053_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|187aa|up_3|NZ_CP014160.1_588065_588626_+	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|178aa|up_2|NZ_CP014160.1_588760_589294_-	pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ)	NA|156aa|up_1|NZ_CP014160.1_589562_590030_-	NA	NA|86aa|up_0|NZ_CP014160.1_590125_590383_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|128aa|down_0|NZ_CP014160.1_591977_592361_-	pfam04138, GtrA, GtrA-like protein	NA|851aa|down_1|NZ_CP014160.1_592499_595052_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|358aa|down_2|NZ_CP014160.1_595133_596207_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|587aa|down_3|NZ_CP014160.1_596196_597957_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|306aa|down_4|NZ_CP014160.1_598020_598938_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|494aa|down_5|NZ_CP014160.1_599072_600554_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|486aa|down_6|NZ_CP014160.1_601018_602476_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|794aa|down_7|NZ_CP014160.1_603066_605448_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|94aa|down_8|NZ_CP014160.1_605737_606019_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|347aa|down_9|NZ_CP014160.1_606751_607792_-	COG2855, COG2855, Predicted membrane protein [Function unknown]
GCF_001543145.1_ASM154314v1	NZ_CP014160	Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome	4	1264419-1265912	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Type I-E	GGATCACCCCCGCATATGCGGGAAGAAG,CTTCTTCCCGCATATGCGGGGGTGATCCT,CTTCTTCCCGCATATGCGGGGGTGATCC	28,29,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	23,24,24	24	TypeI-E	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA|91aa|up_9|NZ_CP014160.1_1253463_1253736_+,NA|111aa|down_1|NZ_CP014160.1_1266625_1266958_-	NA|91aa|up_9|NZ_CP014160.1_1253463_1253736_+	NA	NA|64aa|up_8|NZ_CP014160.1_1254718_1254910_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|927aa|up_7|NZ_CP014160.1_1255029_1257810_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|560aa|up_6|NZ_CP014160.1_1257811_1259491_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|212aa|up_5|NZ_CP014160.1_1259492_1260128_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_4|NZ_CP014160.1_1260120_1261206_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_3|NZ_CP014160.1_1261198_1261915_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|214aa|up_2|NZ_CP014160.1_1261916_1262558_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|up_1|NZ_CP014160.1_1262560_1263505_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|299aa|up_0|NZ_CP014160.1_1263504_1264401_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|112aa|down_0|NZ_CP014160.1_1265988_1266324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|111aa|down_1|NZ_CP014160.1_1266625_1266958_-	NA	NA|416aa|down_2|NZ_CP014160.1_1266986_1268234_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|153aa|down_3|NZ_CP014160.1_1268246_1268705_-	PRK07308, PRK07308, flavodoxin; Validated	NA|235aa|down_4|NZ_CP014160.1_1268863_1269568_-	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators	NA|274aa|down_5|NZ_CP014160.1_1269875_1270697_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|485aa|down_6|NZ_CP014160.1_1270971_1272426_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|306aa|down_7|NZ_CP014160.1_1272440_1273358_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|165aa|down_8|NZ_CP014160.1_1273367_1273862_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|174aa|down_9|NZ_CP014160.1_1273931_1274453_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
GCF_001543145.1_ASM154314v1	NZ_CP014160	Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome	5	1266403-1266544	5	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	Type I-E	CTTCTTCCCGCATATGCGGGGGTGATCCT	29	0	0	NA	NA	I-C,I-E,II-B	2	2	TypeI-E	DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3	NA,NA|111aa|down_0|NZ_CP014160.1_1266625_1266958_-	NA|64aa|up_9|NZ_CP014160.1_1254718_1254910_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|927aa|up_8|NZ_CP014160.1_1255029_1257810_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|560aa|up_7|NZ_CP014160.1_1257811_1259491_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|212aa|up_6|NZ_CP014160.1_1259492_1260128_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_5|NZ_CP014160.1_1260120_1261206_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_4|NZ_CP014160.1_1261198_1261915_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|214aa|up_3|NZ_CP014160.1_1261916_1262558_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|up_2|NZ_CP014160.1_1262560_1263505_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|299aa|up_1|NZ_CP014160.1_1263504_1264401_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|112aa|up_0|NZ_CP014160.1_1265988_1266324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|111aa|down_0|NZ_CP014160.1_1266625_1266958_-	NA	NA|416aa|down_1|NZ_CP014160.1_1266986_1268234_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|153aa|down_2|NZ_CP014160.1_1268246_1268705_-	PRK07308, PRK07308, flavodoxin; Validated	NA|235aa|down_3|NZ_CP014160.1_1268863_1269568_-	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators	NA|274aa|down_4|NZ_CP014160.1_1269875_1270697_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|485aa|down_5|NZ_CP014160.1_1270971_1272426_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|306aa|down_6|NZ_CP014160.1_1272440_1273358_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|165aa|down_7|NZ_CP014160.1_1273367_1273862_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|174aa|down_8|NZ_CP014160.1_1273931_1274453_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|212aa|down_9|NZ_CP014160.1_1274562_1275198_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]
