assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001543085.1_ASM154308v1	NZ_CP014144	Streptococcus salivarius strain JF, complete genome	1	210084-210177	1	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3	Orphan	TGTTCTAAAATTCGAGTTGGCAATTAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA,NA	NA|540aa|up_9|NZ_CP014144.1_201539_203159_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|282aa|up_8|NZ_CP014144.1_203242_204088_-	pfam14373, Imm_superinfect, Superinfection immunity protein	NA|102aa|up_7|NZ_CP014144.1_204178_204484_-	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|111aa|up_6|NZ_CP014144.1_204483_204816_-	pfam05154, TM2, TM2 domain	NA|290aa|up_5|NZ_CP014144.1_205000_205870_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|776aa|up_4|NZ_CP014144.1_205935_208263_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|51aa|up_3|NZ_CP014144.1_208311_208464_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|59aa|up_2|NZ_CP014144.1_208472_208649_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|180aa|up_1|NZ_CP014144.1_208849_209389_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|163aa|up_0|NZ_CP014144.1_209517_210006_+	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies	NA|270aa|down_0|NZ_CP014144.1_210204_211014_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|256aa|down_1|NZ_CP014144.1_211006_211774_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|834aa|down_2|NZ_CP014144.1_211967_214469_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|138aa|down_3|NZ_CP014144.1_214643_215057_+	pfam11208, DUF2992, Protein of unknown function (DUF2992)	NA|289aa|down_4|NZ_CP014144.1_215403_216270_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|281aa|down_5|NZ_CP014144.1_216269_217112_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|152aa|down_6|NZ_CP014144.1_217130_217586_+	pfam04397, LytTR, LytTr DNA-binding domain	NA|144aa|down_7|NZ_CP014144.1_217595_218027_+	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|237aa|down_8|NZ_CP014144.1_218108_218819_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|228aa|down_9|NZ_CP014144.1_219030_219714_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_001543085.1_ASM154308v1	NZ_CP014144	Streptococcus salivarius strain JF, complete genome	2	833837-833908	2	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3	Orphan	CAGGGACATTCTCGGGTTTGTCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA|141aa|up_8|NZ_CP014144.1_829541_829964_-,NA|52aa|up_3|NZ_CP014144.1_832023_832179_-,NA|76aa|up_2|NZ_CP014144.1_832721_832949_-,NA|84aa|up_0|NZ_CP014144.1_833333_833585_-,NA|188aa|down_2|NZ_CP014144.1_837829_838393_-,NA|80aa|down_6|NZ_CP014144.1_843076_843316_-,NA|108aa|down_7|NZ_CP014144.1_843358_843682_+	NA|161aa|up_9|NZ_CP014144.1_828976_829459_-	pfam03592, Terminase_2, Terminase small subunit	NA|141aa|up_8|NZ_CP014144.1_829541_829964_-	NA	NA|235aa|up_7|NZ_CP014144.1_830302_831007_-	pfam07067, DUF1340, Protein of unknown function (DUF1340)	NA|135aa|up_6|NZ_CP014144.1_830999_831404_-	TIGR01671, hypothetical_phage_protein, phage uncharacterized protein TIGR01671	NA|106aa|up_5|NZ_CP014144.1_831400_831718_-	pfam07116, DUF1372, Protein of unknown function (DUF1372)	NA|93aa|up_4|NZ_CP014144.1_831782_832061_-	pfam07852, DUF1642, Protein of unknown function (DUF1642)	NA|52aa|up_3|NZ_CP014144.1_832023_832179_-	NA	NA|76aa|up_2|NZ_CP014144.1_832721_832949_-	NA	NA|132aa|up_1|NZ_CP014144.1_832945_833341_-	COG4570, Rus, Holliday junction resolvase [DNA replication, recombination, and repair]	NA|84aa|up_0|NZ_CP014144.1_833333_833585_-	NA	NA|750aa|down_0|NZ_CP014144.1_833986_836236_-	COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair]	NA|528aa|down_1|NZ_CP014144.1_836246_837830_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|188aa|down_2|NZ_CP014144.1_837829_838393_-	NA	NA|366aa|down_3|NZ_CP014144.1_838407_839505_-	pfam13479, AAA_24, AAA domain	NA|438aa|down_4|NZ_CP014144.1_839504_840818_-	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type	NA|574aa|down_5|NZ_CP014144.1_840822_842544_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|80aa|down_6|NZ_CP014144.1_843076_843316_-	NA	NA|108aa|down_7|NZ_CP014144.1_843358_843682_+	NA	NA|79aa|down_8|NZ_CP014144.1_843826_844063_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|128aa|down_9|NZ_CP014144.1_844232_844616_+	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional
GCF_001543085.1_ASM154308v1	NZ_CP014144	Streptococcus salivarius strain JF, complete genome	3	1437262-1437368	3	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3	Orphan	CCAGACTATACAGGTAAACTAGAAGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA|213aa|up_7|NZ_CP014144.1_1404380_1405019_+,NA|363aa|up_2|NZ_CP014144.1_1413813_1414902_+,NA	NA|192aa|up_9|NZ_CP014144.1_1400895_1401471_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|227aa|up_8|NZ_CP014144.1_1401467_1402148_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|213aa|up_7|NZ_CP014144.1_1404380_1405019_+	NA	NA|755aa|up_6|NZ_CP014144.1_1405080_1407345_-	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|582aa|up_5|NZ_CP014144.1_1408154_1409900_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP014144.1_1409889_1411758_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|508aa|up_3|NZ_CP014144.1_1411851_1413375_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|363aa|up_2|NZ_CP014144.1_1413813_1414902_+	NA	NA|4647aa|up_1|NZ_CP014144.1_1415428_1429369_+	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|1811aa|up_0|NZ_CP014144.1_1429785_1435218_+	TIGR02331, surface_protein_R28, Rib/alpha/Esp surface antigen repeat	NA|1215aa|down_0|NZ_CP014144.1_1442452_1446097_+	pfam17965, MucBP_2, Mucin binding domain	NA|403aa|down_1|NZ_CP014144.1_1446279_1447488_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1060aa|down_2|NZ_CP014144.1_1447484_1450664_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|698aa|down_3|NZ_CP014144.1_1451047_1453141_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|409aa|down_4|NZ_CP014144.1_1453235_1454462_+	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|524aa|down_5|NZ_CP014144.1_1454562_1456134_+	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|513aa|down_6|NZ_CP014144.1_1456120_1457659_+	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|149aa|down_7|NZ_CP014144.1_1457661_1458108_+	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|792aa|down_8|NZ_CP014144.1_1458100_1460476_+	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	NA|503aa|down_9|NZ_CP014144.1_1460488_1461997_+	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA
GCF_001543085.1_ASM154308v1	NZ_CP014144	Streptococcus salivarius strain JF, complete genome	4	1640984-1641061	4	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3	Orphan	TAAAATAAATCTACAAATGTAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA,NA|228aa|down_8|NZ_CP014144.1_1648746_1649430_-,NA|231aa|down_9|NZ_CP014144.1_1649435_1650128_-	NA|575aa|up_9|NZ_CP014144.1_1628353_1630078_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|93aa|up_8|NZ_CP014144.1_1632340_1632619_+	pfam01817, CM_2, Chorismate mutase type II	NA|452aa|up_7|NZ_CP014144.1_1632697_1634053_+	PRK13570, PRK13570, anthranilate synthase component I; Provisional	NA|189aa|up_6|NZ_CP014144.1_1634049_1634616_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|335aa|up_5|NZ_CP014144.1_1634706_1635711_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|256aa|up_4|NZ_CP014144.1_1635707_1636475_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|194aa|up_3|NZ_CP014144.1_1636461_1637043_+	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|403aa|up_2|NZ_CP014144.1_1637039_1638248_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|261aa|up_1|NZ_CP014144.1_1638251_1639034_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|391aa|up_0|NZ_CP014144.1_1639749_1640922_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|144aa|down_0|NZ_CP014144.1_1641089_1641521_+	TIGR02698, Uncharacterized_16	NA|743aa|down_1|NZ_CP014144.1_1641524_1643753_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|68aa|down_2|NZ_CP014144.1_1643826_1644030_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|349aa|down_3|NZ_CP014144.1_1644167_1645214_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|227aa|down_4|NZ_CP014144.1_1645654_1646335_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|226aa|down_5|NZ_CP014144.1_1646294_1646972_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|253aa|down_6|NZ_CP014144.1_1646973_1647732_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|285aa|down_7|NZ_CP014144.1_1647774_1648629_+	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|228aa|down_8|NZ_CP014144.1_1648746_1649430_-	NA	NA|231aa|down_9|NZ_CP014144.1_1649435_1650128_-	NA
