assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001535565.1_ASM153556v1	NZ_CP014139	Streptococcus pyogenes strain MEW123 chromosome, complete genome	1	604492-604654	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U,Type I-C, Type I-U?	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U?,TypeI-C,TypeI-U	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|NZ_CP014139.1_592957_593521_+,NA	NA|132aa|up_9|NZ_CP014139.1_591960_592356_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|188aa|up_8|NZ_CP014139.1_592957_593521_+	NA	NA|883aa|up_7|NZ_CP014139.1_593522_596171_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_CP014139.1_596324_598733_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP014139.1_598865_599594_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP014139.1_599593_601489_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|NZ_CP014139.1_601493_602342_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_CP014139.1_602343_603018_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP014139.1_603014_604040_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP014139.1_604050_604344_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_CP014139.1_604814_605525_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_CP014139.1_605537_606161_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_CP014139.1_606203_607310_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|578aa|down_3|NZ_CP014139.1_608133_609867_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_4|NZ_CP014139.1_609939_611019_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_5|NZ_CP014139.1_611032_611749_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_6|NZ_CP014139.1_611914_612388_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_7|NZ_CP014139.1_612529_613210_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|143aa|down_8|NZ_CP014139.1_614817_615246_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|338aa|down_9|NZ_CP014139.1_615285_616299_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
GCF_001535565.1_ASM153556v1	NZ_CP014139	Streptococcus pyogenes strain MEW123 chromosome, complete genome	2	1097850-1098084	1,2	CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36	0	0	NA	NA	II-A:II-A	3,2	3	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA|214aa|down_8|NZ_CP014139.1_1107947_1108589_-	NA|263aa|up_9|NZ_CP014139.1_1085860_1086649_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|NZ_CP014139.1_1086652_1088302_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|NZ_CP014139.1_1088437_1089265_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|NZ_CP014139.1_1089261_1090071_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|NZ_CP014139.1_1090087_1090579_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|NZ_CP014139.1_1090597_1091023_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|NZ_CP014139.1_1091229_1092249_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|NZ_CP014139.1_1092378_1092816_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NZ_CP014139.1_1094566_1096399_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|378aa|up_0|NZ_CP014139.1_1096567_1097701_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|NZ_CP014139.1_1098186_1098849_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP014139.1_1098838_1099180_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP014139.1_1099176_1100046_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_CP014139.1_1100045_1104152_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_CP014139.1_1104596_1105229_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_CP014139.1_1105228_1105993_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_CP014139.1_1105992_1106745_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_CP014139.1_1106754_1107885_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_CP014139.1_1107947_1108589_-	NA	NA|452aa|down_9|NZ_CP014139.1_1108712_1110068_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_001535565.1_ASM153556v1	NZ_CP014139	Streptococcus pyogenes strain MEW123 chromosome, complete genome	3	1836684-1836780	1	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|82aa|up_9|NZ_CP014139.1_1831042_1831288_-,NA|58aa|up_8|NZ_CP014139.1_1831790_1831964_-,NA|538aa|up_7|NZ_CP014139.1_1832250_1833864_-,NA|174aa|up_6|NZ_CP014139.1_1833853_1834375_-,NA|123aa|up_5|NZ_CP014139.1_1834384_1834753_-,NA|64aa|up_4|NZ_CP014139.1_1834661_1834853_-,NA|111aa|up_3|NZ_CP014139.1_1834852_1835185_-,NA|61aa|up_2|NZ_CP014139.1_1835196_1835379_-,NA|81aa|up_1|NZ_CP014139.1_1835599_1835842_-,NA	NA|82aa|up_9|NZ_CP014139.1_1831042_1831288_-	NA	NA|58aa|up_8|NZ_CP014139.1_1831790_1831964_-	NA	NA|538aa|up_7|NZ_CP014139.1_1832250_1833864_-	NA	NA|174aa|up_6|NZ_CP014139.1_1833853_1834375_-	NA	NA|123aa|up_5|NZ_CP014139.1_1834384_1834753_-	NA	NA|64aa|up_4|NZ_CP014139.1_1834661_1834853_-	NA	NA|111aa|up_3|NZ_CP014139.1_1834852_1835185_-	NA	NA|61aa|up_2|NZ_CP014139.1_1835196_1835379_-	NA	NA|81aa|up_1|NZ_CP014139.1_1835599_1835842_-	NA	NA|63aa|up_0|NZ_CP014139.1_1836479_1836668_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_CP014139.1_1836836_1837280_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NZ_CP014139.1_1837459_1838623_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NZ_CP014139.1_1838779_1839391_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NZ_CP014139.1_1840120_1840393_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_4|NZ_CP014139.1_1840409_1841771_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NZ_CP014139.1_1841806_1842259_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NZ_CP014139.1_1842255_1844232_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NZ_CP014139.1_1844321_1846220_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NZ_CP014139.1_1846343_1846661_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NZ_CP014139.1_1847436_1848558_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
