The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	5226330	1740241	1749705	5226330	protease,tRNA	Dickeya_phage(16.67%)	8	NA	NA
WP_002896440.1|1740241_1741357_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
WP_004150848.1|1741353_1743294_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896516.1|1743370_1743592_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_002896520.1|1743917_1744235_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896522.1|1744265_1746545_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_001040187.1|1746665_1746884_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002898014.1|1747237_1747939_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_057222283.1|1747983_1749705_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
>prophage 2
NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	5226330	2375560	2457339	5226330	protease,capsid,terminase,transposase,head,tail,holin,portal,integrase	Klebsiella_phage(22.22%)	88	2397878:2397894	2431709:2431725
WP_060175773.1|2375560_2376076_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	53.5	4.6e-23
WP_002903398.1|2376368_2376527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016530209.1|2377138_2377399_-	pyocin activator PrtN family protein	NA	A0A1L5C290	Pseudoalteromonas_phage	43.7	1.5e-11
WP_004213359.1|2377518_2377704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016530208.1|2377700_2378363_-	hypothetical protein	NA	Q71T76	Escherichia_phage	56.0	2.2e-54
WP_060175774.1|2378382_2378700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213351.1|2378827_2379613_-	hypothetical protein	NA	C7BGF1	Burkholderia_phage	52.9	5.3e-63
WP_004213349.1|2379612_2379912_-	hypothetical protein	NA	K7PJS4	Enterobacterial_phage	46.7	9.4e-13
WP_159129014.1|2380652_2380886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124726148.1|2381293_2382157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213343.1|2382404_2383037_-	helix-turn-helix domain-containing protein	NA	A0A1W6JP50	Morganella_phage	56.1	3.7e-51
WP_032444269.1|2383136_2383334_+	hypothetical protein	NA	H9C161	Pectobacterium_phage	64.4	1.7e-15
WP_004213338.1|2383359_2383821_+	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	88.2	1.7e-69
WP_004184738.1|2384058_2384238_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	75.0	1.6e-15
WP_004213337.1|2384227_2385181_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	74.9	3.1e-102
WP_004202055.1|2385177_2385987_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	69.3	2.0e-110
WP_004184734.1|2385996_2386374_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	73.6	5.1e-48
WP_071888313.1|2386386_2387367_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	67.5	4.9e-135
WP_040088784.1|2387381_2387744_+	antitermination protein Q	NA	K7PGW2	Enterobacterial_phage	95.0	9.5e-60
WP_040088785.1|2387766_2388210_-	hypothetical protein	NA	A5LH78	Enterobacteria_phage	70.1	4.6e-48
WP_024176410.1|2389478_2389778_+|holin	phage holin family protein	holin	A0A286N2Q5	Klebsiella_phage	83.8	4.5e-39
WP_060175775.1|2389774_2390314_+	glycoside hydrolase family 108 protein	NA	A0A286N2Q6	Klebsiella_phage	98.3	5.7e-101
WP_060175776.1|2390310_2390658_+	hypothetical protein	NA	A0A286N2Q7	Klebsiella_phage	81.7	2.1e-40
WP_060175777.1|2390654_2390930_+	hypothetical protein	NA	G8C7W1	Escherichia_phage	64.0	4.6e-22
WP_060175778.1|2390880_2391078_+	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	85.2	5.0e-23
WP_032750796.1|2391148_2391637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060175779.1|2391723_2392107_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	93.7	2.6e-63
WP_032408647.1|2392173_2392410_+	DUF2560 family protein	NA	A0A286N2R1	Klebsiella_phage	94.9	1.6e-31
WP_071888324.1|2392930_2393281_+	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	79.8	3.0e-50
WP_001119413.1|2393438_2393936_+|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	71.3	7.4e-63
WP_060175782.1|2393939_2395691_+|terminase	terminase large subunit	terminase	A0A1P8DTK0	Proteus_phage	72.4	2.3e-252
WP_000923127.1|2395838_2397065_+|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	85.3	2.5e-208
WP_000999827.1|2397057_2397657_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	82.5	1.0e-90
WP_060175783.1|2397666_2398905_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	69.4	1.1e-158
2397878:2397894	attL	AACAGCGCCAGCAGCAG	NA	NA	NA	NA
WP_016530189.1|2398982_2399300_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	51.0	1.8e-22
WP_023313061.1|2399308_2399647_+|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	68.8	6.6e-39
WP_016530187.1|2399643_2400093_+	HK97 gp10 family phage protein	NA	Q9MCS9	Enterobacteria_phage	81.9	7.4e-62
WP_016530186.1|2400089_2400437_+	DUF3168 domain-containing protein	NA	K7PKL6	Enterobacterial_phage	63.7	2.8e-32
WP_016530185.1|2400493_2401198_+	immunoglobulin domain-containing protein	NA	K7PHL2	Enterobacterial_phage	67.4	6.6e-81
WP_016530184.1|2401228_2401633_+|tail	phage tail assembly chaperone	tail	K7PKV6	Enterobacterial_phage	57.4	3.2e-32
WP_016530183.1|2401635_2401941_+	DUF4035 domain-containing protein	NA	Q9MCS5	Enterobacteria_phage	64.6	4.7e-28
WP_016530182.1|2402014_2402248_+	hypothetical protein	NA	K7PH16	Enterobacteria_phage	47.2	1.9e-08
WP_004225014.1|2405019_2405988_-|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	91.3	2.2e-172
WP_004177132.1|2406783_2407257_+	hypothetical protein	NA	A0A286S298	Klebsiella_phage	62.1	1.4e-55
WP_004864228.1|2407243_2407720_+	DUF1833 family protein	NA	A0A286S2B1	Klebsiella_phage	65.8	4.8e-51
WP_022615519.1|2407732_2408113_+	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	80.2	1.6e-57
WP_060175785.1|2408109_2411187_+	kinase	NA	A0A286S259	Klebsiella_phage	61.3	0.0e+00
WP_060175786.1|2411260_2413414_+	hypothetical protein	NA	B5TAB2	Burkholderia_phage	42.8	9.0e-89
WP_060175787.1|2413426_2414161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022615522.1|2414216_2414861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004214894.1|2415028_2415328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004214887.1|2416528_2417629_-|integrase	site-specific integrase	integrase	A0A1W6JP34	Morganella_phage	56.8	8.3e-115
WP_022615523.1|2417757_2418876_-	AbgT family transporter	NA	NA	NA	NA	NA
WP_060175788.1|2418999_2420445_-	amidohydrolase	NA	NA	NA	NA	NA
WP_009760675.1|2420444_2421755_-	M20 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_032105294.1|2421921_2422830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004143055.1|2422931_2423495_+	DNA endonuclease SmrA	NA	NA	NA	NA	NA
WP_004151560.1|2423491_2424298_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002903522.1|2424467_2425154_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_060175789.1|2425164_2425821_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_004179693.1|2425831_2427034_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_060175790.1|2427043_2428396_+	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA	NA
WP_060175791.1|2428385_2429153_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_012968329.1|2429142_2429532_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_004179708.1|2430576_2432193_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
2431709:2431725	attR	AACAGCGCCAGCAGCAG	NA	NA	NA	NA
WP_060175792.1|2432355_2434008_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_004148278.1|2434062_2435574_-	anion permease	NA	NA	NA	NA	NA
WP_004152245.1|2436215_2438993_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	31.1	6.2e-66
WP_016946653.1|2439060_2440011_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_004176303.1|2439991_2440711_-	two-component system response regulator DcuR	NA	NA	NA	NA	NA
WP_004183910.1|2440707_2442324_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA	NA
WP_004176301.1|2442479_2442836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060175793.1|2442999_2443920_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_004190310.1|2444184_2445840_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_002903632.1|2445997_2446924_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_057222347.1|2446913_2447816_-	malonate decarboxylase subunit epsilon	NA	NA	NA	NA	NA
WP_004152239.1|2447815_2448433_-	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA	NA
WP_004148291.1|2448436_2449396_-	AEC family transporter	NA	A0A0U2C0Y4	Salmonella_phage	90.3	2.7e-53
WP_004224637.1|2449532_2450333_-	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA	NA
WP_004143105.1|2450332_2451166_-	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_004143106.1|2451158_2451458_-	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA	NA
WP_029602374.1|2451475_2452318_-	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA	NA
WP_060175794.1|2452317_2453973_-	malonate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_002903679.1|2454197_2455232_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002903681.1|2455674_2456037_+	multidrug efflux SMR transporter subunit KpnE	NA	NA	NA	NA	NA
WP_002903683.1|2456023_2456353_+	multidrug efflux SMR transporter subunit KpnF	NA	NA	NA	NA	NA
WP_002903685.1|2456396_2456513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002903687.1|2456526_2457339_-|protease	serine protease	protease	NA	NA	NA	NA
>prophage 3
NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	5226330	2492547	2498994	5226330		Escherichia_phage(100.0%)	7	NA	NA
WP_004892174.1|2492547_2493168_-	aldolase	NA	A0A077SK32	Escherichia_phage	99.5	1.8e-114
WP_023283677.1|2493160_2494426_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.3	4.3e-232
WP_002903955.1|2494437_2495340_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
WP_002210513.1|2495600_2496362_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_001620095.1|2496400_2497261_-	class A broad-spectrum beta-lactamase SHV-1	NA	A0A077SL40	Escherichia_phage	99.7	4.4e-156
WP_004176262.1|2497558_2497819_+	hypothetical protein	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
WP_025368140.1|2497905_2498994_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	99.7	1.4e-210
>prophage 1
NZ_CP014009	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 plasmid pRJF293, complete sequence	224263	16637	78365	224263	transposase,integrase,protease	Macacine_betaherpesvirus(18.75%)	52	46025:46039	80785:80799
WP_004026596.1|16637_17717_+|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	34.1	1.7e-40
WP_011251315.1|17716_18673_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_060176233.1|18683_19907_+	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_004196888.1|19909_20368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011251313.1|20847_21486_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_004026586.1|21510_22152_+	TerD family protein	NA	A0A2P1N0C0	Streptomyces_phage	25.1	2.4e-05
WP_004210266.1|22152_22791_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_004026583.1|22883_23924_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011251311.1|23923_25657_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
WP_004196935.1|25684_27184_+	kinase	NA	NA	NA	NA	NA
WP_032720951.1|27562_28045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118061.1|28320_28725_-	DUF2251 domain-containing protein	NA	NA	NA	NA	NA
WP_004118062.1|29272_29551_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_004181742.1|29644_29857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011251308.1|30323_30650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011251307.1|30887_32387_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.1	1.8e-35
WP_004210292.1|32367_33633_-	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011154627.1|33650_33941_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_004210297.1|33952_34915_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA	NA
WP_004210298.1|34911_35475_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_004210300.1|35485_36595_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA	NA
WP_004902273.1|36554_37556_-	Nit6803 family nitriliase	NA	NA	NA	NA	NA
WP_004210304.1|37569_38052_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_004210305.1|38418_39819_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_004186895.1|40427_40742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004210306.1|40984_41467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060176234.1|42682_43567_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	43.1	5.8e-50
WP_029884537.1|44546_45623_-	hypothetical protein	NA	NA	NA	NA	NA
46025:46039	attL	GTGAAATCGCGCATC	NA	NA	NA	NA
WP_004213836.1|46765_47020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213833.1|47197_48334_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_004213829.1|48399_48717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197568.1|48868_49192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011251302.1|49943_50903_-	DNA replication protein	NA	NA	NA	NA	NA
WP_004186937.1|50945_51353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213821.1|51362_51806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213807.1|53069_54038_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.8	7.3e-14
WP_004902302.1|54365_55958_-|transposase	IS66-like element ISKox1 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	3.2e-176
WP_004189161.1|55988_56339_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
WP_004215130.1|56335_56776_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	53.8	4.4e-19
WP_004117790.1|58402_59374_-	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	86.9	7.0e-150
WP_004211841.1|59373_60540_-	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.0e-223
WP_004211839.1|61269_62280_+	replication initiation protein	NA	J9Q7H0	Salmonella_phage	53.5	1.1e-86
WP_004211835.1|64599_65136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004214667.1|67886_68669_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	96.1	3.0e-135
WP_004902338.1|70695_71019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004902343.1|71015_71453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004902347.1|71452_72484_-	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	26.1	2.9e-08
WP_011251296.1|72483_73350_-	ParA family protein	NA	NA	NA	NA	NA
WP_071846033.1|73873_74125_-	molecular chaperone DnaJ	NA	NA	NA	NA	NA
WP_077250517.1|76040_76199_-	hypothetical protein	NA	A0A0U2RK18	Escherichia_phage	69.7	2.2e-05
WP_004213558.1|76511_77441_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.4	5.6e-72
WP_004213560.1|77585_78365_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	89.4	6.0e-51
80785:80799	attR	GTGAAATCGCGCATC	NA	NA	NA	NA
