assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001524625.2_ASM152462v2	NZ_CP013424	Burkholderia sp. MSMB0852 chromosome 1, complete sequence	1	1288697-1288883	1	PILER-CR	no		WYL,cas3,DEDDh,csa3,DinG	Orphan	GCCGACGCGAAGGCGG	16	0	0	NA	NA	NA	3	3	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA|158aa|up_7|NZ_CP013424.1_1280045_1280519_+,NA	NA|80aa|up_9|NZ_CP013424.1_1278399_1278639_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|413aa|up_8|NZ_CP013424.1_1278795_1280034_+	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|158aa|up_7|NZ_CP013424.1_1280045_1280519_+	NA	NA|200aa|up_6|NZ_CP013424.1_1280621_1281221_+	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE	NA|200aa|up_5|NZ_CP013424.1_1281302_1281902_+	cd16328, RseA_N, N-terminal domain of RseA	NA|352aa|up_4|NZ_CP013424.1_1281907_1282963_+	pfam03888, MucB_RseB, MucB/RseB N-terminal domain	NA|486aa|up_3|NZ_CP013424.1_1283030_1284488_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|85aa|up_2|NZ_CP013424.1_1284484_1284739_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|598aa|up_1|NZ_CP013424.1_1285001_1286795_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|298aa|up_0|NZ_CP013424.1_1286811_1287705_+	PRK10861, PRK10861, signal peptidase I	NA|300aa|down_0|NZ_CP013424.1_1289362_1290262_+	PRK00089, era, GTPase Era; Reviewed	NA|293aa|down_1|NZ_CP013424.1_1290248_1291127_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|258aa|down_2|NZ_CP013424.1_1291123_1291897_+	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|144aa|down_3|NZ_CP013424.1_1291902_1292334_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|343aa|down_4|NZ_CP013424.1_1292359_1293388_+	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|466aa|down_5|NZ_CP013424.1_1293443_1294841_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|186aa|down_6|NZ_CP013424.1_1295111_1295669_-	PRK00529, PRK00529, elongation factor P; Validated	NA|407aa|down_7|NZ_CP013424.1_1295853_1297074_-	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|784aa|down_8|NZ_CP013424.1_1297281_1299633_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|198aa|down_9|NZ_CP013424.1_1299746_1300340_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
GCF_001524625.2_ASM152462v2	NZ_CP013424	Burkholderia sp. MSMB0852 chromosome 1, complete sequence	2	3160305-3161352	1	CRT	no		WYL,cas3,DEDDh,csa3,DinG	Orphan	CGGCAANGGCGGCAGCAACGGC	22	1	3	3161311-3161330|3161311-3161330|3161311-3161330	NZ_CP013425.1_162766-162747|NZ_CP013425.1_1980225-1980244|NZ_CP013425.1_2157311-2157292	NA	18	18	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA|156aa|up_0|NZ_CP013424.1_3158316_3158784_-,NA|160aa|down_9|NZ_CP013424.1_3174533_3175013_-	NA|767aa|up_9|NZ_CP013424.1_3146958_3149259_-	TIGR02639, ATP-dependent_Clp_protease_subunit, ATP-dependent Clp protease ATP-binding subunit clpA	NA|105aa|up_8|NZ_CP013424.1_3149255_3149570_-	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|68aa|up_7|NZ_CP013424.1_3150101_3150305_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|535aa|up_6|NZ_CP013424.1_3150431_3152036_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|420aa|up_5|NZ_CP013424.1_3152203_3153463_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP013424.1_3153727_3154306_+	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|72aa|up_3|NZ_CP013424.1_3154567_3154783_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|170aa|up_2|NZ_CP013424.1_3154977_3155487_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|705aa|up_1|NZ_CP013424.1_3155748_3157863_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|156aa|up_0|NZ_CP013424.1_3158316_3158784_-	NA	NA|282aa|down_0|NZ_CP013424.1_3161966_3162812_-	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|249aa|down_1|NZ_CP013424.1_3162979_3163726_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|466aa|down_2|NZ_CP013424.1_3163747_3165145_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|480aa|down_3|NZ_CP013424.1_3165909_3167349_+	PRK10504, PRK10504, putative transporter; Provisional	NA|425aa|down_4|NZ_CP013424.1_3167851_3169126_+	cd01948, EAL, EAL domain	NA|202aa|down_5|NZ_CP013424.1_3169204_3169810_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|372aa|down_6|NZ_CP013424.1_3170504_3171620_-	PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional	NA|176aa|down_7|NZ_CP013424.1_3171629_3172157_-	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|402aa|down_8|NZ_CP013424.1_3173254_3174460_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|160aa|down_9|NZ_CP013424.1_3174533_3175013_-	NA
GCF_001524625.2_ASM152462v2	NZ_CP013424	Burkholderia sp. MSMB0852 chromosome 1, complete sequence	3	3242125-3242212	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG	Orphan	CGCGCGCCGCTCCCATCCGAAGCC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA,NA|102aa|down_4|NZ_CP013424.1_3248693_3248999_-	NA|315aa|up_9|NZ_CP013424.1_3231803_3232748_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|443aa|up_8|NZ_CP013424.1_3232860_3234189_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|475aa|up_7|NZ_CP013424.1_3234239_3235664_-	pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase	NA|319aa|up_6|NZ_CP013424.1_3235651_3236608_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|259aa|up_5|NZ_CP013424.1_3236612_3237389_-	PRK07067, PRK07067, L-iditol 2-dehydrogenase	NA|155aa|up_4|NZ_CP013424.1_3237675_3238140_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|324aa|up_3|NZ_CP013424.1_3238222_3239194_+	cd01020, TroA_b, Metal binding protein TroA_b	NA|299aa|up_2|NZ_CP013424.1_3239218_3240115_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|264aa|up_1|NZ_CP013424.1_3240107_3240899_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|283aa|up_0|NZ_CP013424.1_3241095_3241944_-	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|369aa|down_0|NZ_CP013424.1_3242217_3243324_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|348aa|down_1|NZ_CP013424.1_3243911_3244955_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|475aa|down_2|NZ_CP013424.1_3245387_3246812_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|480aa|down_3|NZ_CP013424.1_3247155_3248595_+	TIGR03173, pbuX, xanthine permease	NA|102aa|down_4|NZ_CP013424.1_3248693_3248999_-	NA	NA|516aa|down_5|NZ_CP013424.1_3249086_3250634_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1067aa|down_6|NZ_CP013424.1_3250637_3253838_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|412aa|down_7|NZ_CP013424.1_3253853_3255089_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|212aa|down_8|NZ_CP013424.1_3255506_3256142_+	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional	NA|243aa|down_9|NZ_CP013424.1_3256376_3257105_-	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)
GCF_001524625.2_ASM152462v2	NZ_CP013424	Burkholderia sp. MSMB0852 chromosome 1, complete sequence	4	3690933-3691129	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG	Orphan	CCTGGTCCCATGCAAAGCTGTCGACCAGGGTTAGCGCTTCAGCGCTTAT	49	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA|232aa|up_6|NZ_CP013424.1_3681873_3682569_-,NA	NA|525aa|up_9|NZ_CP013424.1_3677725_3679300_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|148aa|up_8|NZ_CP013424.1_3679406_3679850_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|279aa|up_7|NZ_CP013424.1_3680363_3681200_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|232aa|up_6|NZ_CP013424.1_3681873_3682569_-	NA	NA|179aa|up_5|NZ_CP013424.1_3682736_3683273_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|453aa|up_4|NZ_CP013424.1_3683350_3684709_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|678aa|up_3|NZ_CP013424.1_3684755_3686789_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|429aa|up_2|NZ_CP013424.1_3686791_3688078_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|402aa|up_1|NZ_CP013424.1_3688517_3689723_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|381aa|up_0|NZ_CP013424.1_3689748_3690891_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|404aa|down_0|NZ_CP013424.1_3691196_3692408_-	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|709aa|down_1|NZ_CP013424.1_3692459_3694586_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|301aa|down_2|NZ_CP013424.1_3694744_3695647_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|630aa|down_3|NZ_CP013424.1_3695803_3697693_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|298aa|down_4|NZ_CP013424.1_3698035_3698929_-	cd08477, PBP2_CrgA_like_8, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|330aa|down_5|NZ_CP013424.1_3699050_3700040_+	cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|332aa|down_6|NZ_CP013424.1_3700680_3701676_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|258aa|down_7|NZ_CP013424.1_3701668_3702442_-	PRK14343, PRK14343, lipoyl(octanoyl) transferase LipB	NA|109aa|down_8|NZ_CP013424.1_3702528_3702855_-	pfam11142, DUF2917, Protein of unknown function (DUF2917)	NA|322aa|down_9|NZ_CP013424.1_3702956_3703922_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional
GCF_001524625.2_ASM152462v2	NZ_CP013425	Burkholderia sp. MSMB0852 chromosome 2, complete sequence	1	520408-520617	1	CRT	no		DinG,csa3,cas3	Orphan	ACAAGNNCGACGACAAGA	18	4	7	520426-520443|520426-520443|520462-520479|520498-520515|520498-520515|520498-520515|520582-520599	NZ_CP013425.1_2013034-2013017|NZ_CP013424.1_1808621-1808638|NZ_CP013425.1_1677284-1677301|NZ_CP013425.1_1939498-1939515|NZ_CP013424.1_2623935-2623918|NZ_CP013424.1_3093119-3093136|NZ_CP013424.1_2711962-2711979	NA	5	5	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA|90aa|up_1|NZ_CP013425.1_516865_517135_-,NA|62aa|down_6|NZ_CP013425.1_529156_529342_-	NA|542aa|up_9|NZ_CP013425.1_508368_509994_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|307aa|up_8|NZ_CP013425.1_510491_511412_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|311aa|up_7|NZ_CP013425.1_511661_512594_+	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|378aa|up_6|NZ_CP013425.1_512590_513724_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|78aa|up_5|NZ_CP013425.1_513720_513954_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|434aa|up_4|NZ_CP013425.1_513950_515252_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|289aa|up_3|NZ_CP013425.1_515287_516154_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|227aa|up_2|NZ_CP013425.1_516063_516744_-	pfam17253, DUF5320, Family of unknown function (DUF5320)	NA|90aa|up_1|NZ_CP013425.1_516865_517135_-	NA	NA|725aa|up_0|NZ_CP013425.1_518137_520312_+	PRK02999, PRK02999, malate synthase G; Provisional	NA|550aa|down_0|NZ_CP013425.1_520656_522306_+	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|665aa|down_1|NZ_CP013425.1_522893_524888_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|152aa|down_2|NZ_CP013425.1_525142_525598_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|285aa|down_3|NZ_CP013425.1_525594_526449_+	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed	NA|448aa|down_4|NZ_CP013425.1_526492_527836_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|370aa|down_5|NZ_CP013425.1_528039_529149_-	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|62aa|down_6|NZ_CP013425.1_529156_529342_-	NA	NA|361aa|down_7|NZ_CP013425.1_529387_530470_+	TIGR03227, PhnS, 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein	NA|366aa|down_8|NZ_CP013425.1_530526_531624_+	TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT	NA|316aa|down_9|NZ_CP013425.1_531601_532549_+	PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional
GCF_001524625.2_ASM152462v2	NZ_CP013425	Burkholderia sp. MSMB0852 chromosome 2, complete sequence	2	2886902-2887036	1	CRISPRCasFinder	no		DinG,csa3,cas3	Orphan	GCCGAGCAGCGAAGTCGACAGCGACGCGATGCCGCTATC	39	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas4	NA|502aa|up_5|NZ_CP013425.1_2874737_2876243_+,NA|172aa|up_1|NZ_CP013425.1_2881674_2882190_-,NA|87aa|down_1|NZ_CP013425.1_2889154_2889415_-	NA|435aa|up_9|NZ_CP013425.1_2867037_2868342_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|241aa|up_8|NZ_CP013425.1_2868515_2869238_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1242aa|up_7|NZ_CP013425.1_2869949_2873675_-	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|209aa|up_6|NZ_CP013425.1_2873707_2874334_-	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ	NA|502aa|up_5|NZ_CP013425.1_2874737_2876243_+	NA	NA|287aa|up_4|NZ_CP013425.1_2876441_2877302_-	pfam00563, EAL, EAL domain	NA|1083aa|up_3|NZ_CP013425.1_2877562_2880811_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|222aa|up_2|NZ_CP013425.1_2880810_2881476_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|172aa|up_1|NZ_CP013425.1_2881674_2882190_-	NA	NA|346aa|up_0|NZ_CP013425.1_2882964_2884002_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|229aa|down_0|NZ_CP013425.1_2888418_2889105_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|87aa|down_1|NZ_CP013425.1_2889154_2889415_-	NA	NA|327aa|down_2|NZ_CP013425.1_2889859_2890840_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|846aa|down_3|NZ_CP013425.1_2890830_2893368_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|257aa|down_4|NZ_CP013425.1_2893374_2894145_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|177aa|down_5|NZ_CP013425.1_2894246_2894777_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|642aa|down_6|NZ_CP013425.1_2895472_2897398_+	sd00038, Kelch, Kelch repeat	NA|192aa|down_7|NZ_CP013425.1_2897568_2898144_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|235aa|down_8|NZ_CP013425.1_2898411_2899116_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|276aa|down_9|NZ_CP013425.1_2899154_2899982_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family
