assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001521895.1_ASM152189v1	NZ_CP014004	Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 chromosome, complete genome	1	539827-540405	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTCT,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,29,28	2	2	540284-540315|540283-540315	NZ_CP014005.1_70595-70564|NZ_CP014005.1_70596-70564	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA|79aa|up_3|NZ_CP014004.1_535324_535561_+,NA|372aa|down_8|NZ_CP014004.1_550344_551460_+	NA|411aa|up_9|NZ_CP014004.1_526757_527990_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_8|NZ_CP014004.1_528555_528990_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|NZ_CP014004.1_529105_530305_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|54aa|up_6|NZ_CP014004.1_531596_531758_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_5|NZ_CP014004.1_531800_533951_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_4|NZ_CP014004.1_534197_535277_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|79aa|up_3|NZ_CP014004.1_535324_535561_+	NA	NA|363aa|up_2|NZ_CP014004.1_535579_536668_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP014004.1_536741_538511_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP014004.1_538503_539574_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP014004.1_540816_543432_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP014004.1_543435_544959_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP014004.1_544970_545537_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP014004.1_545529_546177_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP014004.1_546206_547241_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP014004.1_547253_547970_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP014004.1_547969_548845_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP014004.1_548822_549110_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP014004.1_550344_551460_+	NA	NA|228aa|down_9|NZ_CP014004.1_551470_552154_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_001521895.1_ASM152189v1	NZ_CP014004	Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 chromosome, complete genome	2	549158-550108	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	1	1	549979-550011	NZ_CP014005.1_95680-95712	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	14,15,15	15	TypeI-E	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA|372aa|down_0|NZ_CP014004.1_550344_551460_+	NA|590aa|up_9|NZ_CP014004.1_536741_538511_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP014004.1_538503_539574_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP014004.1_540816_543432_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP014004.1_543435_544959_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP014004.1_544970_545537_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP014004.1_545529_546177_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP014004.1_546206_547241_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP014004.1_547253_547970_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP014004.1_547969_548845_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP014004.1_548822_549110_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP014004.1_550344_551460_+	NA	NA|228aa|down_1|NZ_CP014004.1_551470_552154_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP014004.1_552214_552586_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_3|NZ_CP014004.1_553087_553843_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP014004.1_553845_555630_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_5|NZ_CP014004.1_555640_556981_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP014004.1_557064_557688_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP014004.1_557684_558344_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP014004.1_558393_559131_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP014004.1_559127_559358_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_001521895.1_ASM152189v1	NZ_CP014004	Klebsiella pneumoniae subsp. pneumoniae strain NUHL24835 chromosome, complete genome	3	2583108-2583236	3	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA	NA|428aa|up_9|NZ_CP014004.1_2572856_2574140_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP014004.1_2574275_2575676_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP014004.1_2575721_2576414_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP014004.1_2576499_2576898_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP014004.1_2576955_2578200_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP014004.1_2578305_2578764_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP014004.1_2579021_2580479_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP014004.1_2580521_2580974_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP014004.1_2580976_2582032_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP014004.1_2582191_2583052_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP014004.1_2583274_2583490_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP014004.1_2583492_2584716_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP014004.1_2584728_2585325_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP014004.1_2585331_2585970_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP014004.1_2585962_2586757_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP014004.1_2586749_2587988_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP014004.1_2587991_2589335_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP014004.1_2589746_2590487_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP014004.1_2590457_2591225_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP014004.1_2591299_2591881_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
