assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	1	444905-445005	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|70aa|up_8|NZ_CP012013.1_436477_436687_-,NA|128aa|up_6|NZ_CP012013.1_437511_437895_-,NA|34aa|up_0|NZ_CP012013.1_444129_444231_+,NA|221aa|down_1|NZ_CP012013.1_446095_446758_-	NA|84aa|up_9|NZ_CP012013.1_436187_436439_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP012013.1_436477_436687_-	NA	NA|194aa|up_7|NZ_CP012013.1_436864_437446_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP012013.1_437511_437895_-	NA	NA|209aa|up_5|NZ_CP012013.1_438149_438776_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP012013.1_439220_440744_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP012013.1_440759_441329_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP012013.1_441820_442576_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP012013.1_442656_444045_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP012013.1_444129_444231_+	NA	NA|319aa|down_0|NZ_CP012013.1_445021_445978_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP012013.1_446095_446758_-	NA	NA|136aa|down_2|NZ_CP012013.1_446900_447308_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP012013.1_447820_448399_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP012013.1_448398_449667_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP012013.1_449704_451171_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP012013.1_451195_452737_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP012013.1_452804_453998_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP012013.1_454024_454225_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP012013.1_454722_454953_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2	709141-709233	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|36aa|up_3|NZ_CP012013.1_705624_705732_+,NA|169aa|down_4|NZ_CP012013.1_712980_713487_+,NA|239aa|down_5|NZ_CP012013.1_713648_714365_+	NA|313aa|up_9|NZ_CP012013.1_699826_700765_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP012013.1_700975_701512_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP012013.1_701680_702157_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP012013.1_702196_703492_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP012013.1_703519_704041_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP012013.1_704539_705550_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP012013.1_705624_705732_+	NA	NA|139aa|up_2|NZ_CP012013.1_705824_706241_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP012013.1_706237_707899_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP012013.1_708287_708923_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP012013.1_709301_710189_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP012013.1_710336_711287_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP012013.1_711341_712061_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP012013.1_712044_712845_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP012013.1_712980_713487_+	NA	NA|239aa|down_5|NZ_CP012013.1_713648_714365_+	NA	NA|263aa|down_6|NZ_CP012013.1_714533_715322_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP012013.1_715572_715947_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP012013.1_716894_717824_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP012013.1_718018_718243_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	3	829325-829407	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|69aa|up_9|NZ_CP012013.1_815925_816132_+,NA|34aa|down_1|NZ_CP012013.1_830863_830965_+,NA|52aa|down_8|NZ_CP012013.1_839144_839300_+	NA|69aa|up_9|NZ_CP012013.1_815925_816132_+	NA	NA|237aa|up_8|NZ_CP012013.1_816219_816930_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP012013.1_816913_817918_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP012013.1_818391_820332_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP012013.1_820602_822486_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP012013.1_822497_824279_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP012013.1_824500_825478_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP012013.1_825470_826985_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP012013.1_827224_828283_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP012013.1_828633_829176_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP012013.1_829855_830773_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP012013.1_830863_830965_+	NA	NA|502aa|down_2|NZ_CP012013.1_831042_832548_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP012013.1_832888_833389_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP012013.1_833408_834275_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP012013.1_835075_835474_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP012013.1_835436_837542_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP012013.1_837659_838631_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP012013.1_839144_839300_+	NA	NA|324aa|down_9|NZ_CP012013.1_839338_840310_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	4	870377-870457	4	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,DEDDh,DinG	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	870403-870431|870403-870431|870403-870431|870403-870431|870403-870431|870403-870431|870403-870431|870403-870431|870403-870431|870403-870431	NZ_CP012013.1_391324-391296|NZ_CP012013.1_391379-391351|NZ_CP012013.1_1968254-1968226|NZ_CP012013.1_314077-314049|NZ_CP012013.1_920327-920355|NZ_CP012013.1_1003019-1003047|NZ_CP012013.1_1244696-1244668|NZ_CP012013.1_1778638-1778666|NZ_CP012013.1_2135105-2135133|NZ_CP012013.1_2686002-2685974	NA	1	1	Unclear	csa3,WYL,cas3,DEDDh,DinG	NA|35aa|up_7|NZ_CP012013.1_861290_861395_+,NA|36aa|up_5|NZ_CP012013.1_862827_862935_+,NA	NA|191aa|up_9|NZ_CP012013.1_857731_858304_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012013.1_858717_861249_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012013.1_861290_861395_+	NA	NA|370aa|up_6|NZ_CP012013.1_861563_862674_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012013.1_862827_862935_+	NA	NA|280aa|up_4|NZ_CP012013.1_863082_863922_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012013.1_864095_864746_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012013.1_864742_864979_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012013.1_865247_867233_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012013.1_867240_870087_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012013.1_870693_871626_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012013.1_871631_872471_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012013.1_872478_872964_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012013.1_872971_874411_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012013.1_874477_875413_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012013.1_876236_877148_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012013.1_877144_878140_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012013.1_878249_879194_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012013.1_879766_880354_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012013.1_880596_881499_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	5	920261-920342	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	920285-920318|920285-920318	NZ_CP012013.1_1457502-1457469|NZ_CP012013.1_1550062-1550095	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|194aa|up_9|NZ_CP012013.1_913364_913946_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012013.1_914018_914636_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012013.1_914790_915285_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012013.1_915683_916106_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012013.1_916253_916970_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012013.1_917052_917592_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012013.1_917741_918062_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012013.1_918205_918562_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012013.1_918719_919100_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012013.1_919278_920157_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012013.1_920898_921285_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012013.1_921277_921574_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012013.1_921823_922849_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012013.1_922841_923537_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012013.1_923554_924376_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP012013.1_924519_925740_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP012013.1_925753_927142_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP012013.1_927168_927741_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP012013.1_927912_928134_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP012013.1_928134_928407_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	6	1116779-1116866	6	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|45aa|down_0|NZ_CP012013.1_1116875_1117010_-,NA|432aa|down_1|NZ_CP012013.1_1117161_1118457_+	NA|224aa|up_9|NZ_CP012013.1_1104569_1105241_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP012013.1_1105233_1107423_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP012013.1_1107401_1108886_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP012013.1_1108878_1109907_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP012013.1_1109909_1110476_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP012013.1_1110490_1111969_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP012013.1_1111990_1113238_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP012013.1_1113502_1114309_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP012013.1_1114301_1115702_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP012013.1_1115716_1116292_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP012013.1_1116875_1117010_-	NA	NA|432aa|down_1|NZ_CP012013.1_1117161_1118457_+	NA	NA|391aa|down_2|NZ_CP012013.1_1118881_1120054_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP012013.1_1120107_1120650_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP012013.1_1120803_1121070_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP012013.1_1121072_1122791_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP012013.1_1123027_1123261_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP012013.1_1123458_1124820_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP012013.1_1124816_1125836_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP012013.1_1125968_1126631_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	7	1244730-1244815	7	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1244760-1244785|1244760-1244785|1244760-1244785|1244760-1244785|1244760-1244785	NZ_CP012013.1_313917-313942|NZ_CP012013.1_838853-838878|NZ_CP012013.1_875830-875805|NZ_CP012013.1_838797-838822|NZ_CP012013.1_838909-838934	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|31aa|up_9|NZ_CP012013.1_1237300_1237393_-,NA|169aa|up_7|NZ_CP012013.1_1238425_1238932_+,NA|62aa|up_4|NZ_CP012013.1_1241013_1241199_-,NA|78aa|up_3|NZ_CP012013.1_1241820_1242054_-,NA|49aa|up_1|NZ_CP012013.1_1244162_1244309_+,NA|75aa|up_0|NZ_CP012013.1_1244265_1244490_+,NA|76aa|down_6|NZ_CP012013.1_1251789_1252017_+	NA|31aa|up_9|NZ_CP012013.1_1237300_1237393_-	NA	NA|134aa|up_8|NZ_CP012013.1_1237352_1237754_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP012013.1_1238425_1238932_+	NA	NA|166aa|up_6|NZ_CP012013.1_1239190_1239688_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP012013.1_1239841_1240192_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP012013.1_1241013_1241199_-	NA	NA|78aa|up_3|NZ_CP012013.1_1241820_1242054_-	NA	NA|320aa|up_2|NZ_CP012013.1_1242530_1243490_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP012013.1_1244162_1244309_+	NA	NA|75aa|up_0|NZ_CP012013.1_1244265_1244490_+	NA	NA|239aa|down_0|NZ_CP012013.1_1244990_1245707_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP012013.1_1245814_1246540_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP012013.1_1246634_1247360_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP012013.1_1247797_1248799_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP012013.1_1248821_1249754_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP012013.1_1249925_1251482_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP012013.1_1251789_1252017_+	NA	NA|316aa|down_7|NZ_CP012013.1_1252321_1253269_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP012013.1_1253517_1253706_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP012013.1_1254617_1254752_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	8	2124384-2124462	8	CRISPRCasFinder	no	DEDDh	csa3,WYL,cas3,DEDDh,DinG	Unclear	AATTTCTCTATGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|92aa|up_5|NZ_CP012013.1_2118589_2118865_+,NA|129aa|up_1|NZ_CP012013.1_2122849_2123236_-,NA|138aa|down_1|NZ_CP012013.1_2126099_2126513_-,NA|37aa|down_2|NZ_CP012013.1_2126541_2126652_-,NA|31aa|down_6|NZ_CP012013.1_2129657_2129750_-	NA|177aa|up_9|NZ_CP012013.1_2115892_2116423_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|419aa|up_8|NZ_CP012013.1_2116512_2117769_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_7|NZ_CP012013.1_2117771_2117972_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_6|NZ_CP012013.1_2118118_2118583_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_5|NZ_CP012013.1_2118589_2118865_+	NA	NA|406aa|up_4|NZ_CP012013.1_2119142_2120360_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_3|NZ_CP012013.1_2120475_2121105_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|234aa|up_2|NZ_CP012013.1_2122133_2122835_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP012013.1_2122849_2123236_-	NA	NA|253aa|up_0|NZ_CP012013.1_2123452_2124211_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP012013.1_2124682_2125669_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP012013.1_2126099_2126513_-	NA	NA|37aa|down_2|NZ_CP012013.1_2126541_2126652_-	NA	NA|244aa|down_3|NZ_CP012013.1_2126737_2127469_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP012013.1_2127470_2128784_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP012013.1_2129075_2129576_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP012013.1_2129657_2129750_-	NA	DEDDh|185aa|down_7|NZ_CP012013.1_2129964_2130519_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP012013.1_2130586_2131657_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP012013.1_2131903_2132434_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	9	2365930-2366080	9	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|NZ_CP012013.1_2360801_2361032_-,NA|364aa|up_0|NZ_CP012013.1_2364820_2365912_+,NA|35aa|down_0|NZ_CP012013.1_2366411_2366516_-,NA|31aa|down_2|NZ_CP012013.1_2368627_2368720_+	NA|237aa|up_9|NZ_CP012013.1_2356411_2357122_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012013.1_2357242_2357686_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012013.1_2357885_2358299_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012013.1_2358756_2360130_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012013.1_2360801_2361032_-	NA	NA|313aa|up_4|NZ_CP012013.1_2361062_2362001_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012013.1_2362435_2363101_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012013.1_2363252_2363573_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP012013.1_2363574_2364555_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012013.1_2364820_2365912_+	NA	NA|35aa|down_0|NZ_CP012013.1_2366411_2366516_-	NA	NA|379aa|down_1|NZ_CP012013.1_2367202_2368339_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP012013.1_2368627_2368720_+	NA	NA|286aa|down_3|NZ_CP012013.1_2369424_2370282_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP012013.1_2370349_2371132_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP012013.1_2371363_2373169_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP012013.1_2373849_2375388_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP012013.1_2375422_2377555_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP012013.1_2377566_2378001_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP012013.1_2378000_2379107_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	10	2491247-2491440	1	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2491270-2491302|2491270-2491302|2491270-2491302|2491270-2491302|2491326-2491361|2491326-2491361|2491326-2491361|2491326-2491361|2491326-2491361|2491385-2491417|2491385-2491417|2491385-2491417|2491385-2491417	NZ_CP012013.1_1244749-1244717|NZ_CP012013.1_1457456-1457424|NZ_CP012013.1_1550108-1550140|NZ_CP012013.1_2768169-2768201|NZ_CP012013.1_1244696-1244661|NZ_CP012013.1_1968254-1968219|NZ_CP012013.1_314077-314042|NZ_CP012013.1_1778638-1778673|NZ_CP012013.1_2135105-2135140|NZ_CP012013.1_875785-875817|NZ_CP012013.1_1244749-1244717|NZ_CP012013.1_1457456-1457424|NZ_CP012013.1_2768169-2768201	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|55aa|up_9|NZ_CP012013.1_2481774_2481939_+,NA|106aa|up_8|NZ_CP012013.1_2482183_2482501_+,NA|84aa|up_5|NZ_CP012013.1_2487625_2487877_+,NA|57aa|up_0|NZ_CP012013.1_2491016_2491187_+,NA	NA|55aa|up_9|NZ_CP012013.1_2481774_2481939_+	NA	NA|106aa|up_8|NZ_CP012013.1_2482183_2482501_+	NA	NA|1056aa|up_7|NZ_CP012013.1_2482687_2485855_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP012013.1_2485971_2487237_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP012013.1_2487625_2487877_+	NA	NA|255aa|up_4|NZ_CP012013.1_2487868_2488633_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP012013.1_2488794_2489235_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP012013.1_2489227_2490439_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP012013.1_2490540_2490891_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP012013.1_2491016_2491187_+	NA	NA|341aa|down_0|NZ_CP012013.1_2491581_2492604_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP012013.1_2492623_2493223_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP012013.1_2493229_2493463_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP012013.1_2493468_2493915_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP012013.1_2493928_2494414_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP012013.1_2494410_2495670_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP012013.1_2495732_2496227_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP012013.1_2496228_2496735_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP012013.1_2496765_2497770_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP012013.1_2497939_2498545_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001515685.1_ASM151568v1	NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	11	2992270-2992353	10	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2992296-2992327|2992296-2992327|2992296-2992327|2992296-2992327	NZ_CP012013.1_875885-875916|NZ_CP012013.1_875943-875974|NZ_CP012013.1_1126739-1126770|NZ_CP012013.1_1550152-1550183	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|64aa|up_8|NZ_CP012013.1_2984889_2985081_+,NA|166aa|up_7|NZ_CP012013.1_2986167_2986665_-,NA	NA|627aa|up_9|NZ_CP012013.1_2982917_2984798_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_8|NZ_CP012013.1_2984889_2985081_+	NA	NA|166aa|up_7|NZ_CP012013.1_2986167_2986665_-	NA	NA|169aa|up_6|NZ_CP012013.1_2986666_2987173_-	pfam15526, Ntox21, Novel toxin 21	NA|391aa|up_5|NZ_CP012013.1_2987253_2988426_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|268aa|up_4|NZ_CP012013.1_2988766_2989570_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NZ_CP012013.1_2990053_2990254_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP012013.1_2990380_2990950_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP012013.1_2991202_2991598_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP012013.1_2991665_2992019_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP012013.1_2992571_2993411_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP012013.1_2993453_2994173_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP012013.1_2994172_2996050_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP012013.1_2996116_2997496_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP012013.1_2997639_2997993_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP012013.1_2998112_2998250_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
