The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	44364	82723	2998480	transposase,integrase	Streptococcus_phage(37.5%)	37	43849:43865	85399:85415
43849:43865	attL	AATGAAATCATGCATCC	NA	NA	NA	NA
WP_000868132.1|44364_45450_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_059290419.1|45446_47339_+|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
WP_000361059.1|47345_47723_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001072201.1|48781_49513_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_010959190.1|49595_49655_-	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001092058.1|50046_50709_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000373151.1|51256_52129_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_000065262.1|52185_52476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397419.1|52491_52980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000717928.1|53114_53642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000941331.1|53703_54120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803222.1|54408_54573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001070883.1|54586_54808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020444591.1|54943_55522_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_001824952.1|55601_57830_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.6	1.8e-44
WP_001105999.1|57876_58551_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_000163428.1|58833_60180_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000425271.1|60479_60887_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_000010351.1|61254_61935_+	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_000968575.1|62069_62408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193219.1|62465_64109_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_020444593.1|64190_64841_+	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_094616818.1|65035_65530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106057.1|65600_66275_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|67616_68360_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|68456_68885_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_078056052.1|68930_70940_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_000952923.1|71036_72794_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_014532405.1|73249_73318_-	phenol-soluble modulin PSM-mec	NA	NA	NA	NA	NA
WP_000427807.1|73637_74786_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_000438836.1|76265_77330_-	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
WP_000220507.1|77465_77726_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_000350222.1|77725_78370_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000562107.1|78637_79255_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_000378485.1|79335_81750_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.4	1.3e-250
WP_000159127.1|81742_82108_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	49.6	7.7e-25
WP_000361060.1|82345_82723_-|transposase	transposase	transposase	NA	NA	NA	NA
85399:85415	attR	GGATGCATGATTTCATT	NA	NA	NA	NA
>prophage 2
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	401994	413999	2998480	transposase	Streptococcus_phage(72.73%)	13	NA	NA
WP_000690628.1|401994_402588_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
WP_001124173.1|402793_403375_+	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000284571.1|403658_405263_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_000567888.1|405388_405634_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228166.1|405736_406606_+	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|406586_407321_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255866.1|407353_408262_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000627289.1|408258_408789_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|408881_409676_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001079938.1|409951_410524_+	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_072387101.1|410496_410904_+	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_000802831.1|411014_411674_+	RibD family protein	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
WP_000284571.1|412394_413999_-|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
>prophage 3
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	449704	465718	2998480	integrase	Streptococcus_phage(78.57%)	15	445612:445626	461542:461556
445612:445626	attL	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000264071.1|449704_451171_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|451195_452737_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|452804_453998_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|454024_454225_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|454722_454953_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_042857144.1|454949_455372_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	67.9	2.4e-46
WP_001227350.1|455902_456256_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|456313_456502_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_001817446.1|456599_457640_-	hypothetical protein	NA	A0A1S5SF82	Streptococcus_phage	95.7	3.6e-192
WP_001817445.1|457651_458518_-	GTP-binding protein	NA	A0A1S5SF82	Streptococcus_phage	99.0	9.6e-159
WP_000584387.1|458896_459826_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768373.1|459842_460865_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192392.1|460861_462889_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
461542:461556	attR	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000331168.1|462885_465339_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.8	0.0e+00
WP_000723887.1|465322_465718_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
>prophage 4
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	468870	477037	2998480		Streptococcus_phage(85.71%)	10	NA	NA
WP_000870467.1|468870_469365_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|469431_470211_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|470252_470474_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|470470_470761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020444628.1|470757_471942_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	67.9	1.2e-159
WP_001130245.1|472123_473527_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.7	7.5e-177
WP_000185761.1|473548_474322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|474331_474709_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|474729_475044_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|475243_477037_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 5
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	809590	815252	2998480	transposase	Streptococcus_virus(16.67%)	6	NA	NA
WP_001062972.1|809590_810304_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|810307_810727_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|810728_811397_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000284571.1|811585_813190_-|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_000604514.1|813523_814117_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|814100_815252_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 6
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	827224	842011	2998480		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|827224_828283_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|828633_829176_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|829855_830773_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|830863_830965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|831042_832548_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|832888_833389_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|833408_834275_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|835075_835474_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|835436_837542_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|837659_838631_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|839144_839300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|839338_840310_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|840296_841253_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|841249_842011_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 7
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	924519	936476	2998480	capsid,coat,integrase,terminase	Staphylococcus_phage(86.67%)	19	924358:924376	938763:938781
924358:924376	attL	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_020444648.1|924519_925740_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	8.4e-100
WP_001637664.1|925753_927142_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001186979.1|927168_927741_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000560872.1|927912_928134_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	2.0e-07
WP_000124597.1|928134_928407_+	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	84.4	7.7e-38
WP_000784891.1|928418_928574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231375.1|928558_928762_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	100.0	1.0e-31
WP_020444649.1|928763_929147_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	89.0	4.4e-55
WP_001103955.1|929147_929468_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	2.6e-21
WP_001002711.1|929532_930402_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	96.5	9.0e-165
WP_000447459.1|930415_932125_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	96.1	0.0e+00
WP_000356938.1|932454_932835_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	2.0e-68
WP_001019777.1|932831_933473_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.4	5.3e-114
WP_001190598.1|933820_934162_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	3.2e-57
WP_000846290.1|934173_934752_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.3e-29
WP_000448775.1|934769_934988_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000771358.1|935038_935566_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.7	5.8e-90
WP_025174984.1|935697_935910_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001281786.1|935906_936476_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	98.4	1.2e-101
938763:938781	attR	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 8
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1028484	1082259	2998480	protease,bacteriocin,tRNA	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|1028484_1029474_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1029768_1030164_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1030534_1031254_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|1032407_1034216_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1034675_1035482_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|1035504_1035870_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1035973_1036567_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1036752_1037100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1037116_1037752_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1037768_1038578_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|1038574_1039429_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1039449_1040835_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1040844_1042689_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1042966_1043737_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1043931_1045017_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570698.1|1045358_1046927_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|1047068_1047827_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1048020_1048530_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154222.1|1048642_1049833_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1049810_1050986_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1051418_1052900_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1052883_1053144_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1053143_1054706_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1055007_1055811_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|1056029_1058354_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1058370_1059729_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1059867_1061379_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1061865_1062435_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1062644_1062863_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1062943_1063930_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1064128_1064305_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1064319_1064922_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1065838_1065940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1065949_1066222_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1066265_1068230_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1068232_1068553_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1068549_1069191_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1069278_1069569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1069847_1070135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1070140_1071622_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1071710_1072067_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1072543_1073503_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1073548_1073680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1073743_1073959_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620953.1|1074123_1074675_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1074726_1075665_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190623.1|1075846_1077208_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1077194_1078868_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|1078854_1079658_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1079650_1080472_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1080710_1081040_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088779.1|1081077_1082259_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 9
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1102003	1110476	2998480		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1102003_1102486_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1102472_1103597_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1103600_1104305_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1104304_1104568_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1104569_1105241_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1105233_1107423_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1107401_1108886_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1108878_1109907_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1109909_1110476_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 10
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1162132	1221462	2998480	holin,tail,portal,tRNA,head,capsid,plate,terminase	Staphylococcus_phage(81.54%)	79	NA	NA
WP_000401377.1|1162132_1162615_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|1162676_1163816_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1163942_1164500_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1164579_1164753_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1164869_1166255_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000392109.1|1166461_1167142_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_031767738.1|1167173_1167638_-	toxin	NA	A0A0N9BAX8	Staphylococcus_phage	98.7	1.2e-83
WP_001260487.1|1167650_1167974_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_031767740.1|1168397_1168844_+	hypothetical protein	NA	A0A075M4D9	Staphylococcus_phage	98.0	1.8e-76
WP_000939498.1|1168858_1169002_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000933363.1|1169639_1169825_+	helix-turn-helix transcriptional regulator	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
WP_031767742.1|1169826_1170570_+	phage antirepressor KilAC domain-containing protein	NA	G4KNN1	Staphylococcus_phage	99.6	4.7e-138
WP_000395455.1|1170745_1170976_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000066026.1|1171155_1171317_+	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000291089.1|1171410_1171671_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_001004336.1|1171683_1172220_+	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_020444661.1|1172220_1172868_+	ERF family protein	NA	A0A0F6N3I5	Staphylococcus_phage	96.7	2.2e-115
WP_023180131.1|1172867_1173284_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	83.7	7.1e-59
WP_020444663.1|1173297_1173972_+	hypothetical protein	NA	A0A1X9H0A9	Staphylococcus_phage	97.3	3.8e-126
WP_016028252.1|1174081_1174741_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_059290428.1|1174786_1175557_+	conserved phage C-terminal domain-containing protein	NA	A0A2H4PQI2	Staphylococcus_phage	99.2	1.7e-114
WP_000237153.1|1176331_1176493_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_041205435.1|1176505_1176727_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	6.4e-35
WP_000049780.1|1176736_1177141_+	DUF1064 domain-containing protein	NA	Q4ZAR7	Staphylococcus_virus	100.0	1.5e-66
WP_001187239.1|1177145_1177331_+	DUF3113 family protein	NA	Q4ZAR6	Staphylococcus_virus	100.0	2.4e-27
WP_031782732.1|1177694_1177949_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	96.4	2.4e-41
WP_072466103.1|1177948_1178197_+	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	98.8	8.8e-41
WP_020444718.1|1178232_1178613_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	96.0	1.6e-65
WP_000979209.1|1178609_1178957_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_001668981.1|1178953_1179262_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	1.8e-51
WP_052998299.1|1179254_1179506_+	DUF1024 family protein	NA	A0A068A237	Staphylococcus_phage	96.4	1.6e-37
WP_000028423.1|1179495_1179669_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	98.2	2.3e-24
WP_000889680.1|1179669_1179831_+	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	98.1	5.4e-23
WP_031790047.1|1179845_1180379_+	dUTP diphosphatase	NA	Q4ZBS9	Staphylococcus_virus	99.4	1.0e-94
WP_000195793.1|1180415_1180604_+	DUF1381 domain-containing protein	NA	A0EWR9	Staphylococcus_virus	98.4	3.9e-25
WP_001125015.1|1180578_1180779_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_001797333.1|1180781_1180955_+	transcriptional activator RinB	NA	A0A0H3U4U1	Staphylococcus_phage	96.5	2.2e-22
WP_000990002.1|1180955_1181102_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	4.9e-15
WP_000058632.1|1181116_1181536_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001003271.1|1181723_1182164_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169946.1|1182150_1183428_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_000921875.1|1183438_1184977_+|portal	phage portal protein	portal	S4V6D8	Staphylococcus_phage	99.0	1.9e-290
WP_001668926.1|1184983_1185979_+|capsid	minor capsid protein	capsid	B2ZYY2	Staphylococcus_phage	100.0	3.4e-184
WP_000072202.1|1186051_1186222_+	hypothetical protein	NA	B2ZYY3	Staphylococcus_phage	100.0	6.7e-24
WP_000392143.1|1186330_1186951_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	99.0	8.6e-77
WP_000438513.1|1186964_1187939_+|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	100.0	1.7e-183
WP_001114085.1|1187960_1188248_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208960.1|1188256_1188589_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268313.1|1188585_1188888_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	99.0	7.4e-50
WP_001017815.1|1188887_1189235_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_015990319.1|1189246_1189630_+	hypothetical protein	NA	B2ZYZ0	Staphylococcus_phage	100.0	2.6e-68
WP_031879862.1|1189648_1190230_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	99.5	1.4e-105
WP_001100163.1|1190292_1190658_+|tail	tail assembly chaperone	tail	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|1190687_1191032_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_031879863.1|1191048_1194513_+	membrane protein	NA	Q4ZDU6	Staphylococcus_virus	95.2	7.8e-268
WP_031783356.1|1194525_1195473_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.0	1.8e-182
WP_031768995.1|1195481_1197383_+|tail	phage tail protein	tail	I1W634	Staphylococcus_phage	99.7	0.0e+00
WP_029549540.1|1197397_1199308_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.7	0.0e+00
WP_031794187.1|1199307_1201131_+|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	100.0	0.0e+00
WP_000705893.1|1201130_1201508_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_001790193.1|1201511_1201685_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|1201725_1202025_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_052998263.1|1202161_1204045_+	glucosaminidase domain-containing protein	NA	A0A0H3U444	Staphylococcus_phage	96.5	0.0e+00
WP_000276641.1|1204057_1205296_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_031782932.1|1205300_1205696_+	hypothetical protein	NA	S4SWE0	Staphylococcus_phage	96.9	4.4e-66
WP_000354128.1|1205750_1206188_+|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
WP_001148135.1|1206168_1207614_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
WP_001041586.1|1208345_1210283_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|1210485_1211538_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789821.1|1211746_1212430_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246698.1|1212429_1213506_+	iron-regulated surface determinant protein IsdD	NA	NA	NA	NA	NA
WP_001220199.1|1213502_1214381_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_000594530.1|1214393_1215359_+	hemin ABC transporter permease protein IsdF	NA	NA	NA	NA	NA
WP_001242429.1|1215420_1216155_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1216173_1216497_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|1216533_1216641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1216880_1217621_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003559.1|1218001_1219060_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000908982.1|1219059_1221462_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1603829	1695136	2998480	holin,capsid,protease,transposase,portal,tRNA,head,tail,plate,integrase,terminase	Staphylococcus_phage(71.79%)	107	1647193:1647210	1693653:1693670
WP_000858789.1|1603829_1605122_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1605443_1608137_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1608160_1609132_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1609118_1610321_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_042857062.1|1610325_1611468_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1611708_1612026_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1612362_1613043_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1613114_1613702_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1613691_1614267_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1614280_1615525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1615531_1616830_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1616839_1617904_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1617929_1619096_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1619481_1619682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1619890_1620340_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1620431_1621391_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1621392_1622118_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_020444684.1|1622120_1622693_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000284571.1|1623201_1624806_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_001043863.1|1624917_1625190_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1625360_1626359_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1626375_1627686_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1627907_1629083_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1629339_1629531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1629647_1629764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1629794_1630454_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681758.1|1630530_1631499_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1631613_1632600_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1632760_1632877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1633001_1634462_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1634614_1635994_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1635983_1636937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1637044_1637293_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1637398_1637944_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1638222_1638342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1638540_1639455_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1639469_1639676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020444682.1|1639668_1640607_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1640664_1641582_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470336.1|1641672_1641858_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
WP_000528632.1|1642133_1642691_-	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
WP_000284571.1|1642816_1644421_-|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_020444681.1|1645206_1646661_-	N-acetylmuramoyl-L-alanine amidase	NA	B7T0L1	Staphylococcus_virus	98.8	1.0e-285
WP_000339141.1|1646671_1646974_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000466784.1|1647109_1647409_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1647193:1647210	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1647454_1647619_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1647611_1648001_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_020444680.1|1648000_1649467_-|plate	phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	99.6	3.1e-274
WP_000429552.1|1649466_1651377_-	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|1651392_1651683_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384462.1|1651682_1653266_-|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_020444679.1|1653274_1654099_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	1.2e-158
WP_020444678.1|1654098_1660299_-|tail	phage tail tape measure protein	tail	Q4ZCL0	Staphylococcus_virus	99.7	0.0e+00
WP_000438833.1|1660312_1660471_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1660521_1660863_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_020444677.1|1660920_1661376_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	99.3	9.7e-78
WP_000807540.1|1661467_1662109_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	100.0	1.0e-120
WP_001023802.1|1662143_1662539_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1662539_1662941_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395501.1|1662937_1663270_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050975.1|1663281_1663560_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PE36	Staphylococcus_phage	100.0	2.1e-46
WP_001142735.1|1663628_1664792_-|capsid	phage major capsid protein	capsid	A0A2I6PE62	Staphylococcus_phage	100.0	3.6e-217
WP_021187674.1|1664803_1665577_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	98.4	5.1e-135
WP_020444675.1|1665560_1666799_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.1	2.7e-231
WP_020444674.1|1666803_1668495_-|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	99.5	0.0e+00
WP_020444673.1|1668484_1668790_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	8.3e-49
WP_000166257.1|1668916_1669237_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000513704.1|1669397_1669835_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	100.0	6.1e-77
WP_078066180.1|1669847_1671215_-	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	99.1	1.6e-261
WP_000665203.1|1671195_1671486_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|1671619_1671724_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_020444670.1|1671826_1674274_-	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_000265258.1|1674325_1674526_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000237866.1|1674593_1674746_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	98.0	5.8e-19
WP_001125015.1|1674748_1674949_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195789.1|1674923_1675112_-	DUF1381 domain-containing protein	NA	A0A2I6PF34	Staphylococcus_phage	100.0	2.3e-25
WP_001209219.1|1675128_1675302_-	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
WP_031782730.1|1675865_1676114_-	DUF1024 family protein	NA	A0A068A237	Staphylococcus_phage	97.6	2.7e-37
WP_001668981.1|1676106_1676415_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	1.8e-51
WP_000979209.1|1676411_1676759_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_020444668.1|1676755_1677160_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	96.2	2.5e-69
WP_072466103.1|1677172_1677421_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	98.8	8.8e-41
WP_031782732.1|1677420_1677675_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	96.4	2.4e-41
WP_031782733.1|1677674_1678076_-	phage DNA polymerase	NA	A0A2I6PF14	Staphylococcus_phage	99.2	3.6e-68
WP_001164629.1|1678075_1678261_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1678273_1680226_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1680294_1680852_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762547.1|1680877_1682044_-	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	100.0	8.3e-222
WP_000985984.1|1682040_1682403_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	99.2	1.4e-55
WP_000175001.1|1682417_1682741_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	99.1	1.7e-52
WP_001285954.1|1682819_1682981_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1682993_1683257_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1683281_1683497_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1683551_1683917_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1683885_1684131_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000939498.1|1684384_1684528_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148544.1|1684556_1685333_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|1685346_1685583_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_000525004.1|1686060_1686522_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825948.1|1686539_1687124_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001013104.1|1687353_1687500_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1687496_1688111_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_020444721.1|1688236_1689442_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	1.7e-222
WP_001566047.1|1689484_1691512_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
WP_001548912.1|1691504_1692434_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1692678_1694430_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1693653:1693670	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1694410_1695136_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 12
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1750260	1758572	2998480	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1750260_1751046_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1751171_1752062_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_020444722.1|1752071_1753418_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	4.1e-55
WP_000683931.1|1753531_1754632_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1754634_1755312_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1755442_1756549_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1756772_1758572_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 13
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1806202	1871114	2998480	protease,transposase,integrase,tRNA	uncultured_Mediterranean_phage(15.0%)	58	1819735:1819753	1871574:1871592
WP_000734064.1|1806202_1808833_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_001283311.1|1809175_1811653_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000567028.1|1811654_1812323_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000066097.1|1812784_1813903_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000409167.1|1813903_1815046_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000985886.1|1815357_1816371_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000009238.1|1816607_1816754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752913.1|1816793_1816976_-	CsbD family protein	NA	NA	NA	NA	NA
WP_000704122.1|1817075_1817498_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_020444725.1|1817582_1818857_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	3.7e-106
WP_000682646.1|1819017_1819791_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
1819735:1819753	attL	TAAATCTAAACCTTGTTGT	NA	NA	NA	NA
WP_001790559.1|1819790_1819919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044799.1|1820251_1822018_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_000590826.1|1822033_1823296_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_042857057.1|1823756_1824632_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000869983.1|1824628_1825081_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_041205401.1|1825092_1827282_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000093391.1|1827698_1828205_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	5.1e-19
WP_000364542.1|1828450_1828969_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1828990_1831264_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1831466_1833746_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1834020_1834281_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1834299_1835439_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1835461_1836487_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1836488_1837493_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_000271547.1|1837524_1838127_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000368902.1|1838140_1838596_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_020444729.1|1838608_1839901_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_000284571.1|1840327_1841932_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_000916187.1|1842046_1842331_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_016187883.1|1842342_1842663_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_000457385.1|1842668_1842977_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_001259925.1|1843143_1843674_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_000911041.1|1843673_1844516_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_000840602.1|1844715_1844835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001236735.1|1844908_1845382_-	DUF4930 family protein	NA	NA	NA	NA	NA
WP_000025835.1|1845541_1845739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000171859.1|1845855_1846140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092058.1|1846588_1847251_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010959190.1|1847642_1847702_+	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001072201.1|1847784_1848516_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_059290435.1|1849628_1849952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000868132.1|1851846_1852932_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_000261115.1|1853601_1854309_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_020444733.1|1854578_1855850_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000425353.1|1855862_1858493_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
WP_000284571.1|1858632_1860237_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_001001228.1|1860686_1861247_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_001240848.1|1861469_1862543_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_001788970.1|1862576_1862678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001270868.1|1862738_1864025_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000667126.1|1864072_1865047_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_000805950.1|1865049_1865718_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_001230228.1|1865739_1866666_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_001157329.1|1866707_1867523_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_000545451.1|1867544_1868891_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_000867697.1|1869107_1869698_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000472302.1|1869851_1871114_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
1871574:1871592	attR	TAAATCTAAACCTTGTTGT	NA	NA	NA	NA
>prophage 14
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	1980501	2054243	2998480	protease,transposase,tRNA	Staphylococcus_phage(91.53%)	75	NA	NA
WP_001549041.1|1980501_1982919_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1983206_1984388_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000764419.1|1985447_1986011_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1986130_1986532_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1988110_1988938_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1988940_1989060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052997228.1|1989187_1990174_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.2e-182
WP_001008551.1|1990295_1990760_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001838426.1|1990792_1991953_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	4.1e-221
WP_000493892.1|1991963_1992596_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1992602_1993646_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_020444739.1|1994126_1995629_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1996151_1996466_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1996465_1997758_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1997775_1998171_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1998465_1999320_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1999595_1999820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|2000018_2000489_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|2000601_2001045_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|2001031_2001475_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|2001770_2002406_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|2002845_2003559_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|2003818_2004121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|2004376_2004742_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|2004738_2005092_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_059290437.1|2005390_2005897_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	5.1e-19
WP_000453320.1|2007916_2008750_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|2008961_2009870_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|2009994_2011188_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|2011558_2013151_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093391.1|2013264_2013771_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	5.1e-19
WP_002868962.1|2014145_2014892_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|2014896_2015370_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|2015435_2015693_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|2015689_2016691_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|2016695_2018174_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|2018332_2018788_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_020444742.1|2019090_2019741_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	1.0e-51
WP_000070653.1|2019821_2020817_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|2020892_2021519_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|2021559_2021904_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|2022001_2022553_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|2022770_2023412_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|2023525_2023711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2023712_2023889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|2023899_2024283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|2024886_2025030_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|2025232_2025328_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|2025450_2025552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|2025899_2026277_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_020444746.1|2026797_2030910_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_041205415.1|2031759_2032959_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.5	1.0e-227
WP_000028659.1|2032951_2034508_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|2034671_2034806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|2034870_2035590_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|2035740_2036457_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|2036558_2036666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|2036614_2037334_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|2037454_2038174_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|2038231_2038954_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|2039078_2039786_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|2040750_2041317_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|2041789_2042488_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|2042484_2043246_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|2043242_2043935_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|2043957_2045331_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|2045340_2045859_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|2045874_2047119_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001803290.1|2047111_2048854_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	54.1	2.5e-259
WP_000416756.1|2048918_2049062_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|2049798_2049942_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|2050182_2051166_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|2051167_2052103_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|2052902_2053442_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|2053454_2054243_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 15
NZ_CP012013	Staphylococcus aureus subsp. aureus strain Be62 chromosome, complete genome	2998480	2135761	2235508	2998480	holin,capsid,protease,transposase,portal,tRNA,head,tail,integrase,terminase	Staphylococcus_phage(88.46%)	116	2201309:2201326	2225431:2225448
WP_000545370.1|2135761_2137189_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027928.1|2137201_2138659_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2138660_2138963_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_059290441.1|2139329_2140892_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2140980_2142180_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2142192_2144196_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2144199_2146392_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272068.1|2146388_2147081_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2147252_2147555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2147663_2148959_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000195429.1|2149258_2150431_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000827748.1|2151151_2152318_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2152348_2152675_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2152966_2153140_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2153120_2153723_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2153993_2154815_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2154807_2156277_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_020444756.1|2156460_2157537_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2157556_2158351_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2158422_2158530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2158540_2160103_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2160307_2161405_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2161776_2162337_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2162389_2163319_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2163513_2163687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2163738_2165118_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2165237_2166266_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2166535_2166937_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2167509_2167683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2168132_2169173_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713060.1|2169229_2170072_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2170068_2170626_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2170685_2171210_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2171330_2171894_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2171959_2172700_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2172699_2173572_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2173568_2174249_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2174249_2175146_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2175142_2175523_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2175786_2175963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2176205_2176304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2176503_2177790_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669720.1|2178113_2180168_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2181125_2181305_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2181615_2181876_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2181928_2182279_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_059290442.1|2182342_2183515_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	2.2e-134
WP_000727651.1|2184291_2184741_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	99.3	2.1e-77
WP_000919350.1|2185820_2186312_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2186502_2187258_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2187269_2187524_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_072482930.1|2187735_2187912_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
WP_000539688.1|2188061_2188358_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2188415_2188703_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2188749_2188902_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582158.1|2188891_2192677_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_000567408.1|2192692_2194177_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001795393.1|2194173_2198703_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
WP_001789580.1|2198759_2198921_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|2198947_2199298_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2199347_2199572_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2199613_2200258_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2200258_2200666_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2200662_2201067_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2201063_2201426_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2201309:2201326	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2201409_2201694_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2201683_2201968_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2201987_2203133_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000025274.1|2203877_2205065_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2205080_2206742_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2206738_2207083_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2207213_2207513_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2207744_2208161_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265039.1|2208188_2208389_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
WP_000595265.1|2208388_2208538_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|2208534_2208741_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|2208777_2209314_-	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|2209306_2209717_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_031868690.1|2209713_2210247_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	96.1	8.5e-81
WP_000979209.1|2210243_2210591_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_020444718.1|2210587_2210968_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	96.0	1.6e-65
WP_072466103.1|2211003_2211252_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	98.8	8.8e-41
WP_000022727.1|2211251_2211506_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	1.6e-42
WP_041205435.1|2212473_2212695_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	6.4e-35
WP_000237153.1|2212707_2212869_-	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_020444664.1|2212862_2213636_-	ATP-binding protein	NA	Q4ZAS1	Staphylococcus_virus	97.7	1.1e-140
WP_000190226.1|2213645_2214416_-	conserved phage C-terminal domain-containing protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
WP_016028252.1|2214461_2215121_+	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_020444663.1|2215230_2215905_-	hypothetical protein	NA	A0A1X9H0A9	Staphylococcus_phage	97.3	3.8e-126
WP_041205441.1|2215918_2216347_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	4.4e-64
WP_000139720.1|2216346_2216970_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|2216962_2217184_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291489.1|2217193_2217454_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2217546_2217708_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2217704_2218025_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2218083_2218716_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2218730_2218871_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2218901_2219099_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148337.1|2219114_2219864_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000351243.1|2219920_2220460_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2220483_2220744_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338186.1|2220761_2220986_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_001208482.1|2221144_2221915_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000705240.1|2222114_2222297_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2222332_2222479_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2222475_2223090_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857193.1|2223197_2224235_+|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	93.0	1.0e-178
WP_000595324.1|2225353_2226370_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2225431:2225448	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2226391_2227447_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2227881_2229105_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001789591.1|2229529_2230321_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2230382_2231294_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2231454_2232762_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2233614_2234058_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2234222_2234600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020444766.1|2234917_2235508_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.2	4.2e-97
