The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	1068037	1075803	5715815		Thermobifida_phage(16.67%)	10	NA	NA
WP_062572910.1|1068037_1068892_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.9	9.0e-08
WP_062572911.1|1068894_1069359_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_011532415.1|1069371_1069680_-	ribosome-associated translation inhibitor RaiA	NA	A0A0K1LP60	Escherichia_phage	35.2	1.1e-05
WP_028689657.1|1069758_1071258_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011532417.1|1071431_1072157_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	6.4e-23
WP_011532418.1|1072157_1072682_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_062572912.1|1072668_1073241_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_062572913.1|1073249_1073774_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	45.9	5.8e-26
WP_028689660.1|1073774_1074749_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.5	1.7e-34
WP_062572914.1|1074993_1075803_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-24
>prophage 2
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	1566933	1574569	5715815	transposase	Leptospira_phage(33.33%)	7	NA	NA
WP_062573211.1|1566933_1568487_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	34.9	2.0e-82
WP_081100366.1|1568505_1568862_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	41.2	2.8e-16
WP_081100367.1|1568946_1569219_-	hypothetical protein	NA	A0A291L9W7	Bordetella_phage	64.2	1.8e-23
WP_062573214.1|1569677_1571123_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.5	3.2e-58
WP_062573215.1|1571187_1572543_+	phosphomannomutase/phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	24.5	4.1e-07
WP_062573216.1|1572542_1573337_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_081100232.1|1573333_1574569_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.2	5.6e-11
>prophage 3
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	2115772	2124281	5715815	tRNA	uncultured_Caudovirales_phage(75.0%)	10	NA	NA
WP_028692382.1|2115772_2117053_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.4	1.6e-96
WP_062573549.1|2117053_2118445_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_062573550.1|2118478_2119438_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_062573551.1|2119535_2120552_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	79.6	1.0e-151
WP_028692378.1|2120548_2120884_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	77.5	4.0e-44
WP_062573552.1|2120880_2121177_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	63.6	2.8e-25
WP_062573553.1|2121176_2121536_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	64.2	4.7e-35
WP_062573554.1|2121537_2121930_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	3.8e-54
WP_062573555.1|2122015_2123395_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	7.4e-28
WP_062573556.1|2123609_2124281_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.5	8.1e-105
>prophage 4
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	3120314	3131104	5715815		uncultured_Caudovirales_phage(75.0%)	10	NA	NA
WP_062574221.1|3120314_3123389_-	error-prone DNA polymerase	NA	A0A0K1Y906	Streptomyces_phage	29.0	1.6e-102
WP_062574222.1|3123385_3124804_-	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_062574223.1|3124810_3125431_-	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
WP_081100384.1|3125430_3126039_-	repressor LexA	NA	I6S1S3	Salmonella_phage	45.1	1.6e-06
WP_062574225.1|3126242_3126812_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	64.9	8.2e-58
WP_062574226.1|3126804_3127887_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	66.1	8.2e-107
WP_062574228.1|3128212_3128926_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	86.5	8.3e-116
WP_062574229.1|3128949_3129420_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	83.3	3.6e-67
WP_062574230.1|3129434_3130718_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	85.0	3.4e-200
WP_062574231.1|3130747_3131104_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	66.7	4.1e-39
>prophage 5
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	4340987	4395711	5715815	tRNA,plate,tail,holin,bacteriocin	uncultured_Caudovirales_phage(37.93%)	57	NA	NA
WP_028690589.1|4340987_4342763_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	26.3	5.6e-12
WP_003254776.1|4342857_4343079_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_062575767.1|4343168_4343489_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_028690591.1|4343683_4344157_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	37.9	6.2e-19
WP_028690592.1|4344424_4345018_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	48.3	2.3e-10
WP_028690593.1|4345037_4345226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028690594.1|4345252_4345672_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_028690595.1|4346433_4347750_+	OprD family porin	NA	NA	NA	NA	NA
WP_062574894.1|4347907_4349623_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L0T2	Tupanvirus	24.4	2.6e-06
WP_062574895.1|4349644_4350598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062574896.1|4350629_4351694_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_062574897.1|4352433_4355076_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
WP_062574898.1|4355075_4356368_+	virulence factor family protein	NA	NA	NA	NA	NA
WP_062574899.1|4356403_4358302_-	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	35.8	5.3e-77
WP_050704462.1|4358537_4359869_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_028690603.1|4359954_4360413_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_062575768.1|4360534_4361245_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_028690605.1|4361451_4361913_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	50.7	5.0e-37
WP_062361257.1|4361919_4362612_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_028690607.1|4362690_4363470_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_028690608.1|4363590_4364517_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_028690609.1|4364521_4364887_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_028690610.1|4364964_4365615_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_028690611.1|4365871_4366582_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_062574900.1|4366796_4367216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062574901.1|4367217_4367424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062574902.1|4367727_4368846_+	LOG family protein	NA	NA	NA	NA	NA
WP_062574903.1|4368897_4369368_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_028690616.1|4369376_4370453_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	62.4	1.3e-112
WP_062574904.1|4370557_4371040_-	nicotinamide-nucleotide amidohydrolase family protein	NA	B5TK85	Pseudomonas_phage	76.1	3.5e-57
WP_062574905.1|4371087_4371648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081100333.1|4371719_4372985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062575769.1|4373071_4373533_-	lysozyme	NA	B5TK84	Pseudomonas_phage	59.9	2.3e-34
WP_062574907.1|4373565_4374117_-	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	68.9	3.7e-71
WP_062574908.1|4374334_4375369_-	phage late control D family protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	71.1	2.0e-139
WP_028690634.1|4375384_4375591_-|tail	phage tail protein	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	68.7	5.5e-20
WP_062574909.1|4375565_4376411_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	57.1	2.0e-84
WP_062574910.1|4376420_4378709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062574911.1|4378834_4379137_-|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	57.4	1.9e-21
WP_062574912.1|4379149_4379659_-|tail	phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	71.9	4.0e-64
WP_062574913.1|4379672_4380839_-|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	82.0	3.7e-182
WP_081100334.1|4380922_4381351_-	hypothetical protein	NA	Q9ZXK5	Pseudomonas_virus	52.9	7.6e-32
WP_062574914.1|4381359_4383807_-	hypothetical protein	NA	A0A077K818	Ralstonia_phage	54.0	9.0e-85
WP_062574915.1|4383799_4384408_-|tail	phage tail protein I	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	66.0	5.1e-74
WP_062574916.1|4384409_4385291_-|plate	baseplate assembly protein	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	68.3	7.4e-106
WP_028690641.1|4385287_4385614_-	hypothetical protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	67.9	1.6e-34
WP_023631778.1|4385717_4386050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062574917.1|4386284_4386845_-|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	56.4	3.2e-54
WP_062574918.1|4386841_4387339_-	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	33.9	9.8e-15
WP_062574919.1|4387401_4388232_-|bacteriocin	putidacin L1 family lectin-like bacteriocin	bacteriocin	NA	NA	NA	NA
WP_062574920.1|4388242_4388431_-	Com family DNA-binding transcriptional regulator	NA	B5TK59	Pseudomonas_phage	65.8	7.4e-08
WP_062574921.1|4388456_4388804_-|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	82.2	9.2e-44
WP_081100335.1|4389266_4390013_-	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	82.9	1.9e-115
WP_062574922.1|4390162_4392736_+	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.9	1.4e-27
WP_028690650.1|4392877_4393201_+	ferredoxin family protein	NA	NA	NA	NA	NA
WP_011535249.1|4393743_4394751_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	3.9e-34
WP_028690651.1|4394856_4395711_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	36.2	1.4e-13
>prophage 6
NZ_CP014343	Pseudomonas putida strain 1A00316, complete genome	5715815	5396954	5467144	5715815	holin,protease,plate	Escherichia_phage(23.08%)	59	NA	NA
WP_062575492.1|5396954_5398013_-|holin	phosphorylcholine phosphatase	holin	NA	NA	NA	NA
WP_062575493.1|5398257_5399649_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_062575494.1|5399779_5400298_-	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	39.7	5.8e-26
WP_062575495.1|5400352_5401744_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_062575496.1|5401736_5403101_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	41.9	1.1e-55
WP_062575497.1|5403193_5403616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155721694.1|5403758_5404046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051555623.1|5404050_5404467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051555624.1|5404466_5405369_-	NAD synthetase	NA	NA	NA	NA	NA
WP_062575498.1|5405443_5406370_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_081100357.1|5406448_5408215_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA	NA
WP_062575499.1|5408207_5409410_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_062575500.1|5409409_5410114_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.5	1.3e-17
WP_062575501.1|5410113_5413113_-	protein kinase	NA	S4VR00	Pandoravirus	28.4	5.2e-18
WP_028689164.1|5413120_5413840_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_062575502.1|5413836_5414493_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_062575503.1|5414489_5417996_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_062575504.1|5417992_5419303_-	DotU family type VI secretion system protein	NA	NA	NA	NA	NA
WP_028689168.1|5419309_5420644_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_062575505.1|5420659_5421160_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_062575506.1|5421209_5422580_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_062575507.1|5422977_5424006_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_023632506.1|5424079_5424595_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_062575508.1|5424606_5426100_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_028689173.1|5426192_5426681_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_028689174.1|5426753_5427188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062575509.1|5427184_5427595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028689176.1|5427588_5428104_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_062575510.1|5428100_5429963_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_062575511.1|5429926_5430976_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_062575512.1|5430968_5433644_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	32.0	6.3e-84
WP_062575513.1|5433655_5435584_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	26.4	1.4e-40
WP_062575514.1|5435737_5437405_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_062575515.1|5437435_5438740_-	OprD family porin	NA	NA	NA	NA	NA
WP_062575516.1|5439264_5441355_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_062575517.1|5441828_5442935_-	agmatine deiminase	NA	M1HH76	Paramecium_bursaria_Chlorella_virus	52.2	6.6e-104
WP_062575518.1|5443177_5446078_-	aminotransferase	NA	NA	NA	NA	NA
WP_062575519.1|5446245_5447328_+	dTDP-glucose 4,6-dehydratase	NA	K7QJG5	Escherichia_phage	52.2	2.5e-95
WP_062575520.1|5447324_5448200_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	64.4	4.0e-104
WP_062575521.1|5448196_5448745_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.9	6.3e-47
WP_062575522.1|5448741_5449602_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	33.3	4.8e-25
WP_062362721.1|5449641_5451456_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_062575523.1|5451452_5452859_+	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	29.5	1.3e-08
WP_062575524.1|5452855_5453311_+	thioesterase	NA	NA	NA	NA	NA
WP_062575525.1|5453342_5454176_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_050703344.1|5454172_5454739_-	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
WP_062575526.1|5454803_5455466_+	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_062575527.1|5455510_5455951_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
WP_062575528.1|5456126_5456954_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_062575529.1|5456962_5459308_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_028689199.1|5459673_5460153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062575530.1|5460362_5461172_+	protein-glutamate O-methyltransferase	NA	NA	NA	NA	NA
WP_050703335.1|5461290_5461947_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_062575531.1|5461936_5462371_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_050703331.1|5462587_5464129_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	47.3	2.7e-127
WP_062575532.1|5464308_5465211_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_062575533.1|5465319_5466120_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_062575534.1|5466150_5466552_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_062575535.1|5466661_5467144_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
