assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001513695.1_ASM151369v1	NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	1	162146-162254	1	CRISPRCasFinder	no		WYL,casR,cas3,DEDDh,DinG,csa3	Orphan	TAAATCAAAATAAAGTACATTTTGAAAGTTCT	32	0	0	NA	NA	NA	1	1	Orphan	WYL,casR,cas3,DEDDh,DinG,csa3	NA|214aa|up_5|NZ_CP013919.1_157822_158464_+,NA|52aa|up_4|NZ_CP013919.1_159035_159191_-,NA|74aa|up_2|NZ_CP013919.1_161132_161354_+,NA	NA|580aa|up_9|NZ_CP013919.1_151686_153426_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_8|NZ_CP013919.1_153566_154514_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|313aa|up_7|NZ_CP013919.1_154556_155495_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|505aa|up_6|NZ_CP013919.1_155610_157125_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|214aa|up_5|NZ_CP013919.1_157822_158464_+	NA	NA|52aa|up_4|NZ_CP013919.1_159035_159191_-	NA	NA|455aa|up_3|NZ_CP013919.1_159633_160998_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|74aa|up_2|NZ_CP013919.1_161132_161354_+	NA	NA|61aa|up_1|NZ_CP013919.1_161356_161539_+	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|155aa|up_0|NZ_CP013919.1_161556_162021_+	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|580aa|down_0|NZ_CP013919.1_162311_164051_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|106aa|down_1|NZ_CP013919.1_164080_164398_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_2|NZ_CP013919.1_164506_165103_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|82aa|down_3|NZ_CP013919.1_165117_165363_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|281aa|down_4|NZ_CP013919.1_165408_166251_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|280aa|down_5|NZ_CP013919.1_166371_167211_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|284aa|down_6|NZ_CP013919.1_167329_168181_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|125aa|down_7|NZ_CP013919.1_168286_168661_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|199aa|down_8|NZ_CP013919.1_168664_169261_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|down_9|NZ_CP013919.1_169282_170272_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
GCF_001513695.1_ASM151369v1	NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2	539208-539685	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no		WYL,casR,cas3,DEDDh,DinG,csa3	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	1	1	539557-539592	NZ_CP013919.1_1284032-1284067	I-A:I-A:I-A	7,7,7	7	Orphan	WYL,casR,cas3,DEDDh,DinG,csa3	NA|133aa|up_5|NZ_CP013919.1_534197_534596_+,NA|193aa|down_0|NZ_CP013919.1_540076_540655_+	NA|217aa|up_9|NZ_CP013919.1_530260_530911_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP013919.1_531019_533080_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP013919.1_533083_533686_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP013919.1_533713_534181_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP013919.1_534197_534596_+	NA	NA|217aa|up_4|NZ_CP013919.1_534606_535257_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP013919.1_535253_536300_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP013919.1_536315_536609_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP013919.1_536623_537895_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP013919.1_538034_538970_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP013919.1_540076_540655_+	NA	NA|227aa|down_1|NZ_CP013919.1_540761_541442_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP013919.1_541466_541826_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP013919.1_541832_542291_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP013919.1_542672_544508_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP013919.1_544608_545040_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP013919.1_545086_546517_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP013919.1_546637_547453_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP013919.1_547733_548102_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP013919.1_548248_549664_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_001513695.1_ASM151369v1	NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	3	2692607-2692758	3	CRISPRCasFinder	no	cas3	WYL,casR,cas3,DEDDh,DinG,csa3	Unclear	GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	47	0	0	NA	NA	NA	1	1	Unclear	WYL,casR,cas3,DEDDh,DinG,csa3	NA,NA	cas3|1180aa|up_9|NZ_CP013919.1_2681731_2685271_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP013919.1_2685385_2685946_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP013919.1_2686052_2686637_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP013919.1_2686726_2687350_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP013919.1_2687643_2688585_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|225aa|up_4|NZ_CP013919.1_2688661_2689336_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP013919.1_2689402_2689735_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP013919.1_2689785_2690247_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP013919.1_2690381_2690705_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP013919.1_2690776_2691646_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP013919.1_2693799_2695332_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP013919.1_2695662_2697252_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP013919.1_2697493_2698447_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP013919.1_2698717_2699431_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP013919.1_2699473_2700430_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP013919.1_2700480_2701854_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP013919.1_2702240_2702549_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP013919.1_2702668_2702977_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP013919.1_2703661_2704870_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP013919.1_2704866_2705559_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
