The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	0	59496	4082551	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51189_52140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52182_53439_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54670_55405_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55410_56001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56025_56715_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56711_57473_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57552_58452_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58545_59496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	70133	123121	4082551	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70133_71084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71177_71492_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72684_74592_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74753_75374_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75405_75987_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76075_76327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76328_77171_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77276_78686_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78682_79633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79707_80652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80648_82523_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83870_84575_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84571_85744_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85939_86533_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86529_87762_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87779_89039_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89062_90151_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90158_91259_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91262_91838_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91841_92894_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93024_94032_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94033_95320_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95336_95492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95516_96320_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96316_97183_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97257_98388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98387_99227_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100159_100762_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100791_101445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101577_102834_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102881_103781_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103856_104132_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104139_104802_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104863_105865_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105879_106428_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106485_107382_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107378_108440_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108475_109426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110325_111519_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111600_112230_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112291_112975_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112984_114667_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114954_115302_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115392_115710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115992_117009_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117084_117885_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117881_118757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118767_120060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120102_121143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121248_122070_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122170_123121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	165943	226453	4082551	protease,transposase,tRNA	Tupanvirus(12.5%)	50	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190579_191053_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	234385	287973	4082551	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279157_279304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	391906	449415	4082551	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	591469	652661	4082551	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594804_595296_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595314_596388_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596434_597538_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597613_598234_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598254_598764_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598818_599070_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599133_600267_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600274_600661_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600657_603177_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603605_603944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603940_604447_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604508_605309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605419_606361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606454_607990_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609669_611520_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611523_612357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612356_613298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613549_614521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614662_616951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617257_618166_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618220_619186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619260_620922_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620993_621704_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621670_621835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621852_622803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623501_623885_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623942_624545_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625097_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640147_641581_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648343_649225_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	657985	704176	4082551	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692895_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	710342	764271	4082551	transposase,tRNA	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	855149	904413	4082551	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	914025	978965	4082551	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966131_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	998365	1049330	4082551	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_010929591.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_059232557.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012098_1014213_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026477_1027428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027526_1028267_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028461_1030498_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030515_1031526_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031643_1032837_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032866_1033640_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033636_1034827_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034852_1035791_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035787_1038136_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038290_1038932_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039035_1040169_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040261_1040414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040445_1040994_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041012_1041498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041675_1042614_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042616_1042934_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042979_1043924_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045604_1046255_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046308_1046644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046640_1047501_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047517_1047799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047872_1048136_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048379_1049330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1061548	1119979	4082551	protease,transposase,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1061548_1062565_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063353_1064403_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064399_1066043_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066039_1066927_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067067_1067541_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067530_1068553_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068549_1069977_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070914_1071931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072263_1073199_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073248_1075129_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075195_1075540_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075684_1076821_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076817_1077891_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078048_1079485_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079575_1080217_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080552_1081569_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083509_1084460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085764_1087186_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087449_1088166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088250_1088568_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088608_1089022_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089023_1089383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089425_1090970_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091053_1091884_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091918_1093073_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093115_1093988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094104_1096393_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097599_1098064_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098090_1099041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099058_1099196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099408_1100185_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100229_1101087_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101108_1102125_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102259_1103300_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103494_1105576_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105811_1107305_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107535_1108330_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108550_1109909_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109905_1110748_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110766_1112653_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112594_1112846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112890_1113523_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113541_1114144_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114295_1115246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115826_1116534_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116892_1117879_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118018_1119032_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119028_1119979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1319003	1387490	4082551	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319003_1319954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320722_1321361_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322250_1322697_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322778_1323480_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323480_1324248_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324244_1325483_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325482_1326409_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326511_1327627_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327642_1328593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328946_1329528_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329524_1330358_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330568_1331882_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332058_1332940_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332959_1333811_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333863_1334952_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335062_1336190_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336424_1337036_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337134_1338085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338306_1338684_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338831_1339329_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339325_1339853_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339986_1340802_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340814_1341996_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342043_1342937_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343063_1343534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343659_1344487_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344515_1345292_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345288_1345564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345578_1346043_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346054_1346756_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346865_1347366_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347448_1348627_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350254_1350590_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350777_1352226_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352283_1352628_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352734_1353274_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353366_1354317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354334_1354574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355055_1355487_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355668_1356073_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357309_1357633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357635_1358523_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358555_1358981_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359052_1359406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359645_1360152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360190_1361522_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361581_1362397_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362393_1363248_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366310_1368854_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370220_1371975_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371971_1374092_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374096_1376292_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376288_1379630_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382432_1383383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383448_1383628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383744_1384500_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384486_1385632_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386539_1387490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1447981	1503469	4082551	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447981_1448932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450133_1450580_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450572_1452048_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452044_1452800_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452792_1453803_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453792_1455469_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455781_1456114_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456127_1456523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456532_1456859_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456855_1457182_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457108_1458131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458127_1458478_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458525_1458954_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458961_1460335_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460475_1460853_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461115_1462423_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462483_1463314_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463310_1463799_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463840_1465361_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465404_1465881_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466684_1469282_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469311_1470133_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470859_1471609_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471792_1472671_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472768_1473485_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473499_1474060_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474226_1474991_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475010_1475868_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475864_1477064_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477103_1478438_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478490_1480827_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480952_1481516_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481524_1482616_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482687_1483143_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483143_1483938_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483934_1485116_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485102_1485708_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485704_1486478_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486489_1487317_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487478_1489842_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489909_1490629_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490752_1491178_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491212_1492163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492280_1493207_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493272_1494430_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494410_1494878_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495025_1495976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495992_1496427_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496416_1496767_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496963_1498118_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498114_1499287_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499334_1500228_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500273_1500711_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500770_1501460_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501469_1502420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502518_1503469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1598166	1658078	4082551	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598166_1598655_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598772_1599351_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599456_1599825_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599923_1600874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600880_1601993_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602679_1603882_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603917_1604064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604085_1606746_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606758_1610163_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610830_1613056_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613102_1613429_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613479_1614088_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614186_1615137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615235_1616186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616255_1617020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617016_1617616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617719_1618571_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618630_1619257_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619253_1620204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620302_1621415_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621404_1622406_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622511_1624023_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624019_1625324_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625435_1625996_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626263_1626818_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627273_1627489_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627743_1630341_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630337_1631525_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632183_1632798_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632886_1634014_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634025_1634931_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635823_1636774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636955_1637708_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637776_1638436_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638432_1639161_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639173_1641453_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641477_1641681_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641722_1642355_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642490_1643408_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643404_1644118_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644355_1645126_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645130_1645730_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645974_1647465_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647523_1647808_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647945_1648101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648373_1649300_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649436_1650177_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650343_1651720_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651901_1652807_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654458_1656261_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656387_1657029_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657127_1658078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1703250	1758841	4082551	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703250_1704201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704259_1705033_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705025_1706582_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706578_1707529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708855_1709458_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709697_1710399_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710392_1711175_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711359_1712310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712408_1713146_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713335_1714094_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714140_1715130_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715307_1716276_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717815_1718784_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718792_1719734_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720207_1721218_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721208_1722723_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722719_1724066_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724068_1725103_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725152_1726778_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727330_1728281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728385_1729333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729386_1731201_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731193_1731868_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731997_1735072_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735085_1735385_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735699_1736323_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736566_1737436_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737413_1738358_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738443_1739370_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739482_1740262_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740252_1741449_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741479_1742430_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742651_1743341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743405_1744161_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744212_1745205_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745214_1746168_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746283_1747246_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748647_1749076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749072_1750023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750316_1751054_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751477_1752665_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1752668_1753049_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754768_1755740_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755753_1756467_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756471_1757389_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757495_1757792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757890_1758841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	1991605	2061257	4082551	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991605_1994263_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994340_1995543_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995539_1996052_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996174_1996612_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996888_1997839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997937_1998888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1999141_2000947_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2001060_2001228_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001291_2001528_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2001896_2003096_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004611_2005562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006013_2007015_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007187_2008045_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008041_2009304_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009404_2009779_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2009851_2011039_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011123_2011894_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012007_2012772_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012722_2014024_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2014020_2014827_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2016571_2017543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017699_2018212_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018370_2019345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020345_2021140_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021165_2021972_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022082_2022673_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022683_2023862_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023964_2024339_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024591_2025923_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025989_2029220_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030710_2031457_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031541_2032003_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032040_2033099_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033061_2034891_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034930_2035503_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036927_2037749_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038067_2039390_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039749_2040385_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040344_2041295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042165_2043038_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043115_2044255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044613_2045870_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045875_2046403_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046407_2047226_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047225_2047948_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047969_2048284_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048301_2049450_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049480_2050356_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050352_2051672_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051744_2052941_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052951_2054439_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057033_2057933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058070_2059036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059134_2060085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060306_2061257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2072753	2122149	4082551	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072753_2073704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074841_2075138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075312_2076665_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076807_2077824_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079803_2080817_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2080903_2081809_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081965_2082310_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082467_2082926_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082939_2085156_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085152_2086214_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086242_2087217_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087168_2087987_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087999_2088608_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2088782_2089178_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089196_2090636_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090664_2091012_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091030_2091981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092633_2093584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093667_2095485_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095558_2096206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096218_2097148_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097317_2097782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098029_2098710_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098758_2100450_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100465_2101017_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101013_2101385_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101497_2102334_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102344_2102869_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102966_2103146_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103275_2104250_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104380_2104737_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104726_2105602_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105700_2106585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106606_2107902_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108850_2109501_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2109588_2111109_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111366_2113232_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114277_2115228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115245_2115386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116200_2116560_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116547_2117984_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117980_2118634_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118630_2119824_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119927_2121202_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121198_2122149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2133353	2174044	4082551	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2133353_2134304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134402_2135353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135312_2135726_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136010_2136310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136719_2139002_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2139687_2141718_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141737_2141950_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142227_2142767_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142880_2144176_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144252_2145410_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145593_2146493_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146511_2147816_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147781_2148888_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148975_2149212_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149350_2150421_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150424_2151780_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2151806_2152967_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152969_2153608_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2153609_2154896_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2154954_2156250_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156256_2156763_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156759_2157908_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157935_2158361_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158683_2161566_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161658_2162414_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163179_2164529_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164627_2165578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165676_2166627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166700_2167174_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167199_2168408_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168404_2169178_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169177_2169801_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169966_2170227_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170530_2171112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171178_2171433_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171419_2174044_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2201827	2267376	4082551	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201827_2202778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202978_2203788_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2203912_2204863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204859_2205753_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205877_2206072_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206071_2206413_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206422_2208285_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208414_2208927_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208929_2209253_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209254_2209665_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209702_2210914_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210931_2211444_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211659_2212151_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212403_2214440_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214517_2215720_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215848_2216499_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218056_2219007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219577_2219790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219807_2220539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220573_2221215_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221207_2221876_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224088_2224865_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224886_2226044_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226040_2226472_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2226468_2227272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227285_2227687_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227753_2228725_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228790_2230014_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230241_2231192_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231315_2233769_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233957_2235262_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235366_2236020_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236022_2237333_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2237529_2238090_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238201_2238402_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238747_2239314_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239397_2239601_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239907_2240228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240269_2240551_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240625_2241882_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242264_2242594_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244164_2244986_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244985_2246125_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246131_2247028_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2247024_2248950_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249309_2251922_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251974_2254275_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254271_2255480_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2255741_2256116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256112_2257063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257161_2259156_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259215_2260181_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260170_2263032_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263034_2263541_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263645_2264854_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264855_2265794_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265955_2266429_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266425_2267376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2353553	2417131	4082551	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2353553_2354504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354805_2355282_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355905_2357543_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2357573_2358887_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2359020_2359338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2359438_2360761_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360757_2361708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2361806_2362757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2363286_2364309_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2364337_2365168_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2365184_2366882_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2366946_2368023_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2368182_2369046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2369076_2369646_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2369662_2370514_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2371571_2372453_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2372527_2373517_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2373579_2374530_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2374592_2375450_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2375509_2375998_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2377570_2378761_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2378757_2380344_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2380362_2381430_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2381534_2383079_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2383498_2385073_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2385180_2386197_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2386193_2387033_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2387037_2388675_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2388671_2389622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2389639_2389783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2389764_2391039_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2391068_2391359_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2391431_2392445_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2392464_2393727_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2393729_2394653_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2394649_2396143_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2396153_2397086_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2397267_2398593_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2398627_2399971_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2400043_2401564_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2401718_2402450_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2402517_2403858_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2403873_2404785_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2404775_2405369_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2405430_2405817_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2405828_2406299_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2406310_2406934_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2406954_2409702_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2416180_2417131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2689116	2729785	4082551	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689116_2690067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690177_2690360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690459_2691056_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691239_2692331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692830_2693241_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2693299_2693641_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2693646_2696064_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696076_2697099_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697173_2697533_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697548_2697746_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698081_2699032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699226_2699676_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699672_2700623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700733_2702182_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2702296_2702578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702681_2703632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703876_2704590_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704712_2704940_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705234_2705873_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705981_2707016_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707012_2707963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708378_2708903_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708906_2709176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709374_2710436_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710519_2712154_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712155_2712959_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712987_2713947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713950_2715465_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715501_2716506_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716937_2717408_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717443_2718055_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718085_2718709_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718789_2720322_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2720356_2721598_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721641_2722673_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722669_2723839_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2723832_2724513_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2724674_2725517_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725679_2726651_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726822_2727701_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727723_2728794_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728834_2729785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2733896	2816031	4082551	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2733896_2734847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2735596_2736031_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2736023_2737259_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2737266_2738061_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2738057_2738861_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2738887_2739865_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2739893_2741465_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2741475_2742297_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2744021_2745452_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2745464_2746154_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2746249_2747590_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2747591_2747849_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2748202_2749795_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2749891_2751352_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2751574_2752186_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2755932_2756883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2757298_2759935_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2759931_2761056_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2761052_2762435_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2762570_2763038_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2763956_2765102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2765103_2766834_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2766951_2767260_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2767272_2768085_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2768965_2770054_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2771256_2772045_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2772084_2773689_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2773769_2774510_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2774517_2775012_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2775384_2776404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2776400_2777783_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2777815_2778676_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2779679_2780561_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2780619_2781057_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2781147_2782119_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2782157_2783102_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2783197_2784007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2784083_2784458_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2784564_2785257_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2785249_2785666_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785776_2786409_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786437_2786881_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786902_2787994_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2788048_2788849_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788984_2789605_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2789744_2790218_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791357_2792308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792304_2799966_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800206_2804253_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804565_2805147_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805143_2806442_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806521_2807550_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807810_2808761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808757_2809708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810024_2810630_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810683_2811997_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812071_2812542_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812541_2813330_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813340_2814993_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815080_2816031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2839956	2887664	4082551	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2839956_2840907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841041_2842148_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842158_2843256_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843400_2844606_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844612_2845134_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845130_2845622_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845618_2845870_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845850_2846336_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846471_2849933_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849950_2850835_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850844_2851276_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851522_2852026_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852103_2853504_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853578_2854454_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854450_2855458_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855925_2856231_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856321_2856912_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857102_2858119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858310_2860647_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860729_2861164_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861262_2862213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862311_2863262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863258_2864053_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864084_2864789_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864863_2865664_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865660_2866068_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866064_2866706_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866698_2868699_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869959_2871291_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871287_2872238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873944_2874211_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874918_2875257_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879809_2880412_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880508_2881798_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881855_2882587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882583_2883387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883383_2884472_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884468_2885398_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885546_2886692_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886713_2887664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2895661	2959409	4082551	transposase,protease	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2895661_2897977_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898032_2900201_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900197_2905387_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905476_2905791_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906018_2906264_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906358_2906877_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906976_2908182_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908297_2909695_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909811_2910390_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910462_2911854_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912021_2912972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913252_2913873_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913869_2914283_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914279_2915323_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915378_2915567_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915576_2916341_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916431_2917088_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917179_2917938_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917963_2919565_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919765_2920770_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920870_2921134_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921251_2922028_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922618_2923569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925952_2927065_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927121_2928072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2928089_2928356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2928280_2928502_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2928715_2930122_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2930118_2931423_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2931419_2932607_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2932823_2933276_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2933278_2933743_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2933822_2935502_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2935606_2936584_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2936663_2937632_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2937652_2939026_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2939022_2939859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2939975_2940431_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2940446_2940719_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2940811_2941135_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2941182_2941563_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2941782_2942580_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2942736_2944599_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2944648_2945560_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2945564_2945831_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2945917_2946787_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2946922_2947888_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2948058_2949069_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2949216_2950368_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2951510_2952983_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2952993_2953404_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2953467_2954514_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2954620_2955499_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2955512_2956709_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2956785_2958462_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2958458_2959409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	2968168	3012689	4082551	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2968168_2969119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969193_2970348_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970404_2971355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971453_2971759_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971787_2972222_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972223_2973468_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973464_2974175_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974189_2975101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975463_2975868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975864_2976323_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976329_2977238_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977234_2978101_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978087_2978915_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978925_2980053_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981130_2982369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982410_2983673_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983679_2984432_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984483_2984669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984944_2985409_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985440_2986100_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986244_2988353_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988349_2989300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989403_2990024_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990115_2990868_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992002_2993127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993172_2993541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993782_2994733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995768_2996311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996508_2996679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996696_2997647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997643_2998609_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998678_2999515_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000027_3001137_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001198_3002149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3002341_3003124_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3003137_3003887_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3003914_3005261_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3005286_3006216_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3006331_3007237_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3007254_3008454_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3008526_3009219_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3009267_3011694_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3011738_3012689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	3383143	3503388	4082551	transposase,tRNA	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3383143_3384094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384498_3385143_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385167_3385752_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385852_3386470_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386472_3388188_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388184_3388493_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388509_3389127_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389171_3389474_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389574_3390429_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390616_3390841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391010_3391283_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391700_3392108_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392477_3393272_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393372_3394608_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394676_3395693_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395704_3397081_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397077_3398274_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398270_3399809_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399805_3401065_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403005_3403956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404722_3405817_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405809_3407144_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407097_3407781_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407806_3408970_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3408966_3409968_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409967_3410840_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410836_3411586_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411582_3412374_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412370_3413510_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413785_3414571_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414604_3415387_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415390_3415780_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3416919_3417783_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3417818_3418907_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418903_3419854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420207_3423186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424112_3424991_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425955_3426906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427988_3428939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428935_3429403_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429445_3430216_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430236_3431037_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431047_3432457_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432551_3433337_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433576_3434593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434700_3435093_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435230_3435911_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435915_3436887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436982_3437933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439437_3440139_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3440138_3441563_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442632_3443973_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3444088_3445852_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445963_3446842_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446954_3447770_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447773_3448025_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448109_3449126_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449456_3449678_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452038_3452956_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453453_3454662_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454741_3456313_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456430_3457366_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457554_3458499_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459066_3464784_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464789_3465917_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465972_3466599_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3466870_3467887_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467982_3468693_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468689_3469679_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469774_3471406_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471408_3472146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472301_3473174_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473442_3474663_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474659_3475319_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475390_3476023_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476052_3476571_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476581_3477691_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477737_3478592_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478593_3479496_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480718_3481669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483425_3484415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484411_3484570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484590_3485379_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485375_3486407_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486425_3486989_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487044_3488565_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488828_3489533_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489540_3490278_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490383_3490758_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490800_3492090_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492086_3493256_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493252_3494092_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494151_3495087_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495099_3496050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496148_3497111_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497142_3497502_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497626_3498529_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498530_3500303_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500337_3501114_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502437_3503388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010966	Bordetella pertussis strain I979 chromosome, complete genome	4082551	3518326	3576399	4082551	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518326_3519277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519405_3520539_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520582_3521488_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521490_3523191_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523187_3524108_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524115_3525093_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525151_3526186_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528160_3528397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528523_3529387_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529475_3530297_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530376_3531114_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531110_3532103_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532216_3532879_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532923_3534072_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536395_3537346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537686_3538637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538735_3539686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539982_3540480_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540522_3542298_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542305_3543172_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543178_3543913_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545082_3545877_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546166_3546757_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546790_3548119_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548193_3549339_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549450_3550449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550411_3550846_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552362_3553247_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553243_3554449_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554445_3555306_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3555418_3557209_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557249_3557915_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3557915_3558224_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558389_3559676_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3561109_3562060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564011_3565226_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565331_3566321_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566317_3566926_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566938_3567568_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567564_3568185_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568216_3569008_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569859_3570315_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3570333_3571260_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571313_3572600_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573530_3574403_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574399_3575350_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575448_3576399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
