The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	27282	70035	4079396	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	77633	136107	4079396	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83522_84695_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85480_86713_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101832_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	164892	225403	4079396	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	233335	286923	4079396	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_010929591.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	555307	614607	4079396	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555307_556258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557581_558358_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558392_560165_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560166_561069_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561193_561553_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561584_562547_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562645_563596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563608_564544_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564603_565443_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565439_566609_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566605_567895_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567937_568312_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568417_569155_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569162_569867_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570130_571651_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571706_572270_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572288_573320_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573316_574105_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574125_574284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574280_575270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577026_577977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579199_580102_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580103_580958_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581004_582114_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582124_582643_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582672_583305_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583376_584036_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584032_585253_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585521_586394_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586549_587287_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587289_588921_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589016_590006_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590002_590713_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590808_591825_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592096_592723_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592778_593906_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593911_599629_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600196_601141_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601329_602265_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602382_603954_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604033_605242_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605739_606657_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609017_609239_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931363.1|609569_610586_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610670_610922_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610925_611741_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611853_612732_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612843_614607_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	620762	674503	4079396	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620762_621713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621808_622780_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622784_623465_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623602_623995_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624102_625119_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625358_626144_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626238_627648_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627658_628459_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628479_629250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629292_629760_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629756_630707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632655_633534_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634460_637439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637792_638743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638739_639828_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639863_640727_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641866_642256_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642259_643042_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643075_643861_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644136_645276_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645272_646064_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646060_646810_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646806_647679_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647678_648680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648676_649840_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649865_650549_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650502_651837_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651829_652924_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653690_654641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656581_657841_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657837_659376_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659372_660569_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660565_661942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661953_662970_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663038_664274_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664374_665169_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665538_665946_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666363_666636_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666805_667030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667217_668072_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668172_668475_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668519_669137_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669153_669462_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669458_671174_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671176_671794_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671894_672479_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672503_673148_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673552_674503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	723441	763391	4079396	integrase,tRNA,protease,transposase	Pseudomonas_phage(33.33%)	28	720689:720707	740577:740595
720689:720707	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723441_724038_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724034_724817_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724889_725981_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726260_727388_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727729_728776_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728923_732043_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732044_734996_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735011_736223_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736406_737357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737373_737868_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737871_738129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738672_739584_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739665_739950_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740733_741684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740577:740595	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742102_744667_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744711_746565_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746897_748469_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749910_750861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750946_751687_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751913_752861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754248_755199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755392_756208_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756340_757780_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757793_758135_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758189_759845_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759996_761007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761139_761913_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762440_763391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	773318	820936	4079396	tRNA,protease,transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773318_774269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_059232539.1|774407_775160_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	4.3e-46
WP_010931273.1|775398_777123_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777142_778402_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778416_779511_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779507_781634_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781646_782327_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782604_783978_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783979_784999_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785062_786034_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786098_787049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787147_787990_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787989_788325_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788395_789814_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790093_791134_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791213_791465_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791575_792739_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793022_793877_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793873_794764_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794806_795718_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795744_796437_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796451_797432_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797444_799586_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799634_800603_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800593_801262_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801222_802158_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802154_803051_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803047_803770_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803760_803925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804098_804602_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804878_805994_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806136_806601_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806748_807288_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807309_808644_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808657_808963_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809387_809969_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810050_811001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811099_812050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812490_813396_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813451_815056_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815312_816818_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816832_817297_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817586_818537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818699_819230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819229_819541_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819985_820936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	996796	1099189	4079396	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996796_997912_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998012_998831_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998928_999540_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999699_1001076_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001138_1001597_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001681_1002377_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002438_1002720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003282_1004035_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004079_1005156_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005152_1006103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006205_1006868_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006962_1007133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007485_1008487_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008489_1009686_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009706_1010510_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010590_1010887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010917_1011481_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011521_1012379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012386_1013136_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013157_1014030_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014058_1014838_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014871_1015669_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018323_1018716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018709_1019570_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019573_1020536_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021312_1022002_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022862_1023813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024162_1025032_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025102_1025798_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025787_1026297_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026293_1027514_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027461_1028364_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029250_1030537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030575_1031949_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031987_1032689_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032987_1033977_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034077_1034539_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034554_1035103_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035244_1036720_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036825_1037917_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037920_1038703_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038712_1039501_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040626_1041061_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041057_1042068_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042111_1043038_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043324_1043693_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043909_1044860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044904_1047331_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047379_1048072_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048144_1049344_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049361_1050267_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050382_1051312_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051337_1052684_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052711_1053461_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053474_1054257_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054449_1055400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055461_1056571_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057083_1057920_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057989_1058955_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058951_1059902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060287_1060830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061865_1062816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063057_1063426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063471_1064596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065730_1066483_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066574_1067195_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067298_1068249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068245_1070354_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070498_1071158_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071189_1071654_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071929_1072115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072166_1072919_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072925_1074188_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074229_1075468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076545_1077673_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077683_1078511_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078497_1079364_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080730_1081135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852617.1|1081226_1082177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082546_1083458_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083472_1084183_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084179_1085424_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085425_1085860_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085888_1086194_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086292_1087243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087299_1088454_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088528_1089479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090010_1090808_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090855_1091509_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091465_1092554_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092718_1094944_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097221_1098118_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098238_1099189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1129575	1199496	4079396	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
WP_005012808.1|1129575_1130526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130582_1131695_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134078_1135029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135619_1136396_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136513_1136777_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136877_1137882_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138082_1139684_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139709_1140468_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140559_1141216_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141306_1142071_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142080_1142269_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142324_1143368_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143364_1143778_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143774_1144395_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144675_1145626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145793_1147185_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147257_1147836_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147952_1149350_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149465_1150671_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150770_1151289_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151383_1151629_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151856_1152171_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152260_1157450_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157446_1159615_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159670_1161986_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161990_1163310_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163328_1165002_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165006_1165675_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165831_1169653_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169983_1170934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170955_1172101_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172249_1173179_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173175_1174264_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174260_1175064_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175060_1175792_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175849_1177139_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177235_1177838_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182390_1182729_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183436_1183703_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185409_1186360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186356_1187688_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188948_1190949_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190941_1191583_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191579_1191987_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191983_1192784_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192858_1193563_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193594_1194389_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1194385_1195336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195434_1195869_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195951_1198288_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1198479_1199496_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1240567	1369579	4079396	tRNA,transposase	Bacillus_virus(14.29%)	107	NA	NA
WP_010929591.1|1240567_1241518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1241605_1243258_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1243268_1244057_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1244056_1244527_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1244601_1245915_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1245968_1246574_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1246890_1247841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247837_1248788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249048_1250077_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250156_1251455_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251451_1252033_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252345_1256392_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256632_1264294_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264290_1265241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266380_1266854_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266993_1267614_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1267749_1268550_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268604_1269696_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1269717_1270161_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270189_1270822_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270932_1271349_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271341_1272034_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272140_1272515_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1272591_1273401_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273496_1274441_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274479_1275451_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275541_1275979_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276037_1276919_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277922_1278783_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278815_1280198_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280194_1281214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281586_1282081_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282088_1282829_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282909_1284514_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284553_1285342_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1286544_1287633_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1288513_1289326_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289338_1289647_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289764_1291495_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1291496_1292642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1293560_1294028_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294163_1295546_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295542_1296667_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296663_1299300_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299715_1300666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304412_1305024_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305246_1306707_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306803_1308396_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1308749_1309007_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309008_1310349_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310444_1311134_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311146_1312577_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314301_1315123_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315133_1316705_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316733_1317711_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317737_1318541_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318537_1319332_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319339_1320575_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1320567_1321002_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1321751_1322702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1322800_1323751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324372_1326100_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326211_1327570_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327862_1328813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328853_1329924_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329946_1330825_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330996_1331968_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332130_1332973_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333134_1333815_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1333808_1334978_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1334974_1336006_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1336049_1337291_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337325_1338858_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338938_1339562_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339592_1340204_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340239_1340710_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1340899_1341133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1341140_1342145_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342181_1343696_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343699_1344659_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344687_1345491_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345492_1347127_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347210_1348272_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348470_1348740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348743_1349268_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1349683_1350634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350630_1351665_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351773_1352412_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352706_1352934_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353056_1353770_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1354014_1354965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1355068_1355350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355464_1356913_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357023_1357974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357970_1358420_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358614_1359565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1359663_1360614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360949_1361147_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361162_1361522_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361596_1362619_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362631_1365049_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1365054_1365396_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1365454_1365865_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366364_1367456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367639_1368236_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368335_1368518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368628_1369579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1449256	1513471	4079396	tRNA,protease,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1449256_1450207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450373_1450727_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450739_1451102_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451143_1451569_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451771_1453028_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453226_1454207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454356_1455598_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455696_1456647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456655_1457351_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460171_1460771_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460781_1462947_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462970_1464755_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464754_1464844_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465538_1465811_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465810_1467877_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467873_1468824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468922_1469873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469988_1470321_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470317_1471004_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1470990_1471950_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1471991_1474352_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474351_1474984_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475085_1476426_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476472_1477828_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1477953_1478598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478542_1478860_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479132_1479648_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479741_1479903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1479918_1480674_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481012_1481219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481226_1481886_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482180_1484385_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484495_1485719_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485841_1486816_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486883_1488077_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488091_1488892_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488888_1490745_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490741_1491347_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491365_1492751_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493476_1494703_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494791_1495574_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495672_1496623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496649_1497423_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497434_1498676_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1500492_1501320_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1501321_1502032_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1502028_1502628_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1502736_1503330_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1503381_1503564_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1503620_1504679_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1504678_1505665_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1505746_1506682_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1506683_1507436_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1507618_1507858_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1508047_1509277_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1509278_1509779_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1509775_1510375_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1510387_1510888_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1510887_1511946_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004566381.1|1511983_1513471_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1743205	1791220	4079396	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1743205_1744156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1744254_1746855_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1746961_1747966_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1748074_1749415_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1749455_1750484_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1750679_1751225_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1751221_1751782_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1751880_1752831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1752868_1753456_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1753473_1753857_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1755216_1756509_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1756643_1757684_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1757781_1758798_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1759065_1759713_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1759838_1760597_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1760581_1761361_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1761378_1762263_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1762259_1763039_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1763143_1763743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1764031_1764784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1764902_1766303_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1766326_1766725_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1766900_1767101_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1767239_1767968_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1768101_1769517_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1769520_1770384_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1770396_1771146_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1771328_1773344_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1773325_1773994_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1774768_1775719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1775817_1776768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_059232540.1|1776916_1777255_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1777312_1777474_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1777505_1777706_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1777971_1780545_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1780615_1783165_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1785715_1786204_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1786295_1787447_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1787500_1788322_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1788360_1789590_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1789718_1790159_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1790269_1791220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1852782	1912052	4079396	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1852782_1853733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1853857_1854667_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1854867_1855818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1857091_1858309_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1859365_1860268_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1860344_1861217_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1861347_1861716_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1861773_1862820_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1863015_1864272_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1864276_1865614_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1865763_1866720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1866822_1867755_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1867870_1868191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1868183_1868543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1868590_1870165_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1870217_1871162_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1871179_1872010_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1872002_1873637_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1873633_1874989_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1875895_1877473_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1877476_1878751_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1878848_1879223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1880938_1882072_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1882109_1882715_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1882711_1883530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1883601_1886226_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1886212_1886467_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1886533_1887115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1887418_1887679_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1887844_1888468_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1888467_1889241_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1889237_1890446_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1890471_1890945_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1891018_1891969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1892067_1893018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1893116_1894466_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1895231_1895987_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1896079_1898962_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1899284_1899710_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1899737_1900886_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1900882_1901389_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1901395_1902691_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1902749_1904036_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1904037_1904676_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1904678_1905839_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1905865_1907221_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1907224_1908295_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1908433_1908670_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1908757_1909864_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1909829_1911134_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1911152_1912052_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1922292	1979789	4079396	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|1922292_1923243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1923442_1924528_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1924543_1925305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1925301_1926261_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1926323_1926824_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1926856_1927600_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1927695_1927935_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1927948_1928101_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1928186_1929677_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1929768_1930707_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1930703_1930880_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1930882_1931545_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1933166_1933310_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1933306_1934281_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1934447_1935398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1935394_1936669_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1936772_1937966_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1937962_1938616_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1938612_1940049_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1940036_1940396_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1941210_1941351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1941368_1942319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1943364_1945230_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1945487_1947008_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1947095_1947746_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1948694_1949990_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1950011_1950896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1950994_1951870_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1951859_1952216_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1952346_1953321_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1953450_1953630_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1953727_1954252_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1954262_1955099_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1955211_1955583_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1955579_1956131_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1956146_1957838_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1957886_1958567_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1958814_1959279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1959448_1960378_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1960390_1961038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1961111_1962929_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1963012_1963963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1964615_1965566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1965584_1965932_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1965960_1967400_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1967418_1967814_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1967988_1968597_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1968609_1969428_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1969379_1970354_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1970382_1971444_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1971440_1973657_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1973670_1974129_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1974286_1974631_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1974787_1975693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1975779_1976793_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1978772_1979789_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	1982892	2053034	4079396	transposase	Vibrio_phage(25.0%)	60	NA	NA
WP_005013747.1|1982892_1983843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1984328_1984505_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1985189_1986161_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1986164_1987019_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1987037_1987859_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1987890_1988685_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1988733_1989339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1989296_1990130_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1990415_1991921_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1991962_1992745_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1992814_1993261_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1993257_1994484_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1994476_1994881_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1995040_1995343_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1995339_1996290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1996511_1997462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1997560_1998526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1998663_1999563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2002157_2003645_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2003655_2004852_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2004924_2006244_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2006240_2007116_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2007146_2008295_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2008312_2008627_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2008648_2009371_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2009370_2010189_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2010193_2010721_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2010726_2011983_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2012341_2013481_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2013558_2014431_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2015301_2016252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2016211_2016847_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2017206_2018529_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2018847_2019669_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2021093_2021666_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2021705_2023535_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2023497_2024556_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2024593_2025055_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2025139_2025886_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2027376_2030607_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2030673_2032005_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2032257_2032632_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2032734_2033913_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2033923_2034514_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2034624_2035431_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2035456_2036251_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2037251_2038226_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2038384_2038897_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2039053_2040025_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2041769_2042576_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2042572_2043874_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2043824_2044589_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2044702_2045473_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2045557_2046745_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2046817_2047192_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2047292_2048555_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2048551_2049409_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2049581_2050583_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2051034_2051985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2052083_2053034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2248273	2309621	4079396	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2248273_2249224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2249340_2250060_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2250232_2251219_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2251219_2251702_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2251705_2252989_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2252985_2253924_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2253920_2255630_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2255639_2256887_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2258497_2259787_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2260924_2261683_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2262359_2263103_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2263177_2263918_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2264113_2264950_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2265000_2265771_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2265820_2266873_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2266869_2267496_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2267492_2268527_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2268705_2269722_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2269820_2270771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2273511_2274801_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2274919_2275357_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2275400_2276609_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2276755_2277220_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2277243_2278194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2279178_2279952_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2279948_2280947_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2281031_2281808_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2281963_2283568_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2283948_2285073_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2285199_2285823_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2285819_2287721_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2287769_2288564_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2288576_2289578_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2289574_2290081_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2290073_2290922_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2291019_2291562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2291605_2292556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2292711_2293038_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2293034_2293319_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2293315_2293795_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2293791_2295420_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2295416_2295761_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2295760_2298694_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2299852_2300803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2300901_2301198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2301304_2302222_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2302226_2302940_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2302953_2303925_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2305644_2306025_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2306028_2307216_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2307639_2308377_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_077069110.1|2308670_2309621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2330412	2401566	4079396	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_010929591.1|2330412_2331363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2331915_2333541_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2333590_2334625_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2334627_2335974_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2335970_2337485_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2337475_2338486_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2338959_2339901_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2339909_2340878_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2342417_2343386_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2343563_2344553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2344599_2345358_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2345547_2346285_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2346383_2347334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2347518_2348301_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2348294_2348996_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2349235_2349838_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2351164_2352115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2352111_2353668_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2353660_2354434_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2354492_2355443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2355524_2356700_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2356713_2358771_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2358767_2359793_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2359804_2361094_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2361116_2362214_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2362210_2363101_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2363097_2365182_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2365213_2366383_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2366424_2367165_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2367164_2367935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2368259_2368427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2368790_2369576_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2369602_2371687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2371854_2373810_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2374133_2374634_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2374732_2376259_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2376396_2377284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2377298_2378252_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2378303_2380394_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2380409_2380796_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2383489_2384293_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2385586_2386489_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2386553_2387330_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2387651_2388701_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2388824_2390495_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2390499_2391294_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2391392_2392343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2392362_2393268_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2393345_2394044_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2394203_2395148_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2395157_2396645_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2396644_2397712_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2397775_2399188_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2399373_2400594_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2400615_2401566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2497394	2556175	4079396	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2497394_2499344_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2499731_2500508_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2500513_2500906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2501327_2502278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2502274_2503372_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2503403_2504354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2506135_2507377_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2507388_2508162_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2508188_2509139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509618_2510275_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510289_2511957_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511959_2512589_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512800_2513895_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514039_2514852_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514855_2516559_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516609_2517740_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517926_2519003_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519084_2519735_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519749_2521153_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521436_2522255_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522251_2522956_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523855_2524971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525004_2525379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525401_2526559_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526571_2526805_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527439_2530409_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530423_2530633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530784_2531414_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531410_2533501_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533524_2534205_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534201_2534762_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534768_2535866_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536018_2536612_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536608_2537901_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537914_2538457_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538466_2539303_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539336_2540398_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540439_2541492_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541507_2541810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541951_2542902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543080_2544775_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544771_2545857_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545904_2546804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546814_2547459_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548480_2551723_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551733_2552888_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553114_2554077_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554175_2555126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555224_2556175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2608711	2675211	4079396	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608711_2609662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610031_2610604_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610606_2611617_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611609_2612110_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612120_2612462_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2612473_2613265_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613281_2613551_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613573_2614362_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614408_2615425_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615641_2617084_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617262_2618882_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619002_2620823_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620901_2622434_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2622467_2624114_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624183_2625206_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625223_2626357_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626359_2627049_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627048_2627834_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627877_2628642_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628680_2630102_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630167_2630872_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630919_2631339_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631351_2631759_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631942_2632653_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632779_2633070_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633087_2633570_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638075_2639230_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639535_2640552_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640798_2641587_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641653_2642334_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642330_2643101_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643199_2644150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644205_2645123_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645133_2646312_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646331_2647327_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648915_2649524_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649511_2650552_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650569_2651532_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651528_2652722_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652718_2653516_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653541_2654528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654546_2656586_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2656787_2657468_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657481_2658393_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658389_2658968_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659106_2660012_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660019_2663439_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663426_2666027_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666982_2667615_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668008_2668767_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2668763_2669966_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670153_2671104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672011_2673157_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673143_2673899_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674015_2674195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674260_2675211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2874599	2947925	4079396	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2874599_2875955_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877433_2878156_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878210_2879194_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879323_2880274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880270_2881173_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881260_2882019_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882031_2883123_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883220_2884648_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884877_2886092_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886137_2889008_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891418_2891907_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892032_2894729_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894883_2897166_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2897340_2897964_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2898062_2899013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899059_2899614_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899681_2900527_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900596_2901565_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2901564_2902428_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2905260_2909187_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2909922_2913153_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2913434_2914262_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2914295_2914991_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2914983_2916264_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2916273_2917251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2917232_2918933_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2919035_2920139_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2920169_2920925_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2920931_2922452_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922494_2922797_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922793_2923426_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923504_2925370_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925366_2926161_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926189_2927305_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928209_2929088_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929087_2929912_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930079_2931030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931242_2934092_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934073_2934802_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934942_2936406_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936402_2936774_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936791_2938105_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938141_2938600_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938712_2939663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939659_2940673_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940812_2941799_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942157_2942865_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943445_2944396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944547_2945150_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945168_2945801_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945845_2946097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946038_2947925_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	2959650	3009263	4079396	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2959650_2960601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960627_2961092_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962298_2964587_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964703_2965576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965618_2966773_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966807_2967638_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967721_2969266_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969308_2969668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969669_2970083_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970123_2970441_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970525_2971242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971505_2972927_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972993_2975741_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2976073_2977090_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977425_2978067_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978157_2979594_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979751_2980825_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980821_2981958_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2982102_2982447_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982513_2984394_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984443_2985379_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2985711_2986728_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987665_2989093_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989089_2990112_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990101_2990575_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990715_2991603_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991599_2993243_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993239_2994289_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995077_2996094_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996193_2996826_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996834_2997224_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997276_2998329_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999192_3000899_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000972_3001473_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001487_3003545_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003571_3003865_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003966_3004914_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004926_3005802_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005922_3006483_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006517_3006841_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007276_3008014_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008312_3009263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	3030214	3102708	4079396	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3030214_3031165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031207_3032383_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032604_3034395_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034407_3036069_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036081_3038787_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039079_3040834_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040830_3041457_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041453_3042305_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042380_3044495_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044681_3045296_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045441_3045693_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045762_3047145_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047141_3050321_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051128_3052046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052097_3052829_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052888_3053461_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054969_3055986_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056123_3057173_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057277_3058228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058323_3059049_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059259_3059640_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059945_3060818_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060825_3061206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061359_3062634_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3064121_3065030_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065827_3066892_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068728_3069730_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069952_3070594_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070676_3072503_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072746_3073676_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073675_3074425_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074496_3075411_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075430_3076576_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076636_3077548_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077628_3078579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078677_3079262_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079296_3080286_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080282_3081224_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081220_3082441_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082483_3082798_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082989_3083349_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083350_3085066_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085253_3085925_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085939_3087268_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087264_3088164_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088250_3089336_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089328_3090462_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090461_3093143_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093513_3094095_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094220_3094946_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094942_3095620_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095835_3097017_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097789_3097972_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3098001_3098952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099081_3099474_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099750_3100662_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100786_3101761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101757_3102708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	3116215	3169733	4079396	transposase,holin	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116215_3117166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117278_3117530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118035_3119154_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119273_3119486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119645_3119867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119919_3120870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122046_3123417_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123449_3124241_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124253_3125309_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125334_3126210_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126315_3126564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126598_3128053_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128049_3128571_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128599_3129952_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130175_3133064_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135208_3136510_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136524_3137241_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137522_3138203_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138214_3138382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138490_3138637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050855494.1|3138730_3139390_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139788_3141621_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141617_3142568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143731_3145447_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145457_3145949_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3146021_3147038_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147205_3147985_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3148003_3148531_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148824_3149094_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149184_3151344_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151464_3152184_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152180_3153131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153271_3154489_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154482_3155094_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155727_3156705_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156848_3157595_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157616_3158063_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158850_3161082_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161104_3161905_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162186_3163419_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163529_3164519_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164549_3165938_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167536_3168520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168716_3169733_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	3234191	3307353	4079396	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234191_3235142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235138_3236158_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236167_3238876_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3239023_3239680_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239778_3240729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240876_3241770_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241969_3243664_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243698_3244625_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244693_3245791_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245809_3246673_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246684_3247467_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247463_3248582_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248578_3250111_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250151_3251159_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251303_3252026_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252041_3253064_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253380_3254115_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254199_3255945_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255941_3256694_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256738_3257695_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257783_3258350_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258357_3259218_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259247_3259976_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3260007_3260691_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261528_3262443_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262507_3263416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263506_3264931_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264932_3266255_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266251_3268390_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268467_3273588_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273688_3273997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274066_3274624_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274639_3276121_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278291_3279629_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279663_3281661_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281678_3283727_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283857_3284724_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284992_3285958_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286072_3287221_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287645_3287957_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287990_3288251_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288400_3289534_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289604_3290741_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290906_3291701_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291763_3292207_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292322_3293273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293374_3293803_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293875_3296071_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296292_3297243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297202_3297727_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297858_3298830_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298949_3301394_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301409_3302000_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302243_3303194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303351_3304617_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304650_3305748_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306402_3307353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010965	Bordetella pertussis strain H321 chromosome, complete genome	4079396	3318640	3419802	4079396	transposase,terminase,tRNA,protease,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318640_3319591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320322_3320700_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320684_3321386_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321529_3322222_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322221_3323325_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323434_3325807_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325803_3327363_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327387_3328185_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328216_3329362_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329466_3330909_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330911_3332141_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334278_3335229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336358_3336916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336891_3337242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337410_3338205_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338201_3339251_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339250_3339940_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340026_3340524_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340555_3341872_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341888_3342863_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342899_3343358_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343357_3344038_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344040_3344469_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344521_3346252_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346317_3346890_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346870_3347557_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347912_3348584_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348912_3349134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349133_3349415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349411_3349927_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349926_3350478_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350456_3350699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350703_3351516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351515_3351779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351819_3352017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351997_3352414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352418_3356375_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356367_3356757_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356753_3357287_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357354_3357714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357723_3360336_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360361_3360652_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360669_3360999_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361008_3361527_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361781_3362282_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362289_3362712_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362708_3363107_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363103_3363499_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363498_3363699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363700_3364183_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364245_3364497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365171_3366122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366550_3367153_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367275_3367518_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367523_3368579_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368607_3370026_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370028_3371306_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371292_3371778_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372417_3373368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3373624_3374314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374306_3374558_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375112_3375724_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375795_3376002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376253_3377204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3377302_3378253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378351_3379425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379592_3380387_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380426_3380951_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380943_3382686_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382895_3383654_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383656_3384364_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384380_3385262_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385272_3386031_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3385999_3386755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386824_3388243_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388264_3388915_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389048_3389384_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389472_3390423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390499_3392320_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392324_3393398_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393520_3394489_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394562_3395474_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395492_3396065_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396145_3396694_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396693_3398283_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398352_3398592_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398632_3399658_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399723_3400905_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401001_3401454_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401463_3402804_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3403120_3404158_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404539_3404899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404982_3405924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3405998_3406949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407242_3408337_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3408418_3409300_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409321_3410161_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410236_3411754_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411850_3412951_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412967_3413390_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3413412_3413625_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413671_3414592_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414774_3415524_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415526_3415856_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3416062_3417496_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3417507_3417891_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417952_3418753_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418851_3419802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
