The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN879502	Candidatus Protochlamydia naegleriophila strain KNic chromosome cPNK	2885090	1463635	1517881	2885090	protease,transposase	Staphylococcus_phage(37.5%)	47	NA	NA
WP_158021820.1|1463635_1464037_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	44.9	5.0e-17
WP_158021724.1|1464141_1464357_+|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	41.3	4.2e-07
WP_059060949.1|1465641_1465968_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_059060950.1|1466411_1467269_+	DNA-formamidopyrimidine glycosylase	NA	G3MA33	Bacillus_virus	31.5	3.3e-26
WP_032125626.1|1467484_1468108_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.1	6.9e-34
WP_059060951.1|1468104_1469331_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	46.6	8.7e-97
WP_059060952.1|1469357_1469900_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	51.7	9.0e-38
WP_059060953.1|1469964_1470375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079992832.1|1470588_1471770_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA	NA
WP_059060955.1|1472053_1472464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059060959.1|1472731_1473433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059060961.1|1473487_1474240_-	caspase family protein	NA	NA	NA	NA	NA
WP_059060963.1|1474450_1475560_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.0	2.4e-85
WP_059060965.1|1475573_1476122_-	shikimate kinase	NA	NA	NA	NA	NA
WP_079992833.1|1476111_1478922_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_059060967.1|1479074_1479683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059060969.1|1479921_1481592_-	diphosphate--fructose-6-phosphate 1-phosphotransferase	NA	NA	NA	NA	NA
WP_032125635.1|1481603_1482398_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_059060971.1|1482546_1483938_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_059060972.1|1484369_1486301_+	MASE1 domain-containing protein	NA	NA	NA	NA	NA
WP_162264036.1|1486413_1487544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060973.1|1487498_1488863_-	magnesium transporter	NA	NA	NA	NA	NA
WP_059060974.1|1488989_1489640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032125641.1|1489952_1490135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060975.1|1490225_1491236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059060976.1|1491205_1492408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158021725.1|1492894_1493062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060977.1|1494605_1495250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059060979.1|1496058_1496604_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_059060980.1|1497140_1497896_+|transposase	IS1 family transposase	transposase	NA	NA	NA	NA
WP_059060981.1|1498349_1499390_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_059060983.1|1499663_1500173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060990.1|1501541_1502396_+	methyltransferase	NA	NA	NA	NA	NA
WP_158021726.1|1502787_1502877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079992837.1|1502897_1503002_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_059060993.1|1504884_1505133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060995.1|1505173_1505353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059060997.1|1505615_1506341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059061003.1|1508418_1508763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059061005.1|1509326_1512089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059061007.1|1512140_1513304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059061009.1|1513410_1514205_-	F-box protein	NA	NA	NA	NA	NA
WP_059061013.1|1515803_1516205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158021727.1|1516809_1516950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059061015.1|1517023_1517203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079992946.1|1517419_1517551_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	58.5	2.3e-08
WP_059061017.1|1517581_1517881_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LN879502	Candidatus Protochlamydia naegleriophila strain KNic chromosome cPNK	2885090	2179816	2189562	2885090		Catovirus(28.57%)	8	NA	NA
WP_059061657.1|2179816_2181823_+	protein kinase family protein	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	30.1	1.2e-05
WP_059061660.1|2182463_2183222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059061662.1|2183627_2184389_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.6	2.2e-21
WP_059061663.1|2184531_2184948_+	DUF488 domain-containing protein	NA	A0A2K9L455	Tupanvirus	41.1	1.8e-14
WP_059061664.1|2185186_2185942_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	2.6e-59
WP_059061665.1|2186142_2186847_+	hypothetical protein	NA	A0A1V0SAM1	Catovirus	28.3	8.4e-12
WP_079992892.1|2186900_2187629_+	hypothetical protein	NA	A0A1V0SAM1	Catovirus	25.6	3.0e-12
WP_059062417.1|2187633_2189562_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	38.6	1.1e-82
>prophage 1
NZ_LN879503	Candidatus Protochlamydia naegleriophila strain KNic plasmid pPNK, complete sequence	145285	84579	97456	145285	integrase,transposase	Enterobacteria_phage(66.67%)	15	83185:83198	86381:86394
83185:83198	attL	TCTGAGCTGACCCC	NA	NA	NA	NA
WP_079992974.1|84579_85620_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_059062588.1|85932_86157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059062590.1|86776_87037_+	hypothetical protein	NA	NA	NA	NA	NA
86381:86394	attR	GGGGTCAGCTCAGA	NA	NA	NA	NA
WP_059062592.1|87177_87696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079992975.1|88285_88693_-|transposase	transposase	transposase	Q1MVF0	Enterobacteria_phage	48.5	9.8e-29
WP_158021841.1|88799_89527_-|transposase	IS1 family transposase	transposase	NA	NA	NA	NA
WP_059062596.1|89599_90112_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	49.4	6.7e-43
WP_059062603.1|91890_92793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158021842.1|93181_93908_+|transposase	IS1 family transposase	transposase	NA	NA	NA	NA
WP_059062605.1|93897_94767_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_059062607.1|94763_95357_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_059062609.1|95514_95973_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_059062709.1|95974_96514_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_079992977.1|96881_97157_+	RNHCP domain-containing protein	NA	NA	NA	NA	NA
WP_059062611.1|97264_97456_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	39.7	1.7e-07
