assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001485455.1_ASM148545v1	NZ_CP008697	Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis chromosome, complete genome	1	1755007-1755154	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	NA,NA	NA|323aa|up_9|NZ_CP008697.1_1740470_1741439_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|up_8|NZ_CP008697.1_1741450_1743103_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_7|NZ_CP008697.1_1743245_1744145_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_6|NZ_CP008697.1_1744602_1745298_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_5|NZ_CP008697.1_1745723_1747382_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_4|NZ_CP008697.1_1747378_1748335_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_3|NZ_CP008697.1_1748485_1749601_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_2|NZ_CP008697.1_1749597_1751544_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_1|NZ_CP008697.1_1751616_1751841_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_0|NZ_CP008697.1_1752163_1752484_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|73aa|down_0|NZ_CP008697.1_1755539_1755758_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP008697.1_1756042_1756747_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP008697.1_1756788_1758510_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP008697.1_1758510_1760277_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP008697.1_1760399_1761365_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP008697.1_1761908_1762403_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1357aa|down_6|NZ_CP008697.1_1762537_1766608_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP008697.1_1766766_1767378_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP008697.1_1767388_1768732_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP008697.1_1768822_1770115_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_001485455.1_ASM148545v1	NZ_CP008697	Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis chromosome, complete genome	2	3789324-3790147	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	NA,NA	NA|209aa|up_9|NZ_CP008697.1_3780515_3781142_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|350aa|up_8|NZ_CP008697.1_3781878_3782928_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP008697.1_3782924_3783404_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP008697.1_3783403_3784114_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP008697.1_3784132_3784444_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP008697.1_3784637_3784961_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP008697.1_3785010_3785616_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP008697.1_3785615_3787043_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP008697.1_3787044_3787953_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP008697.1_3788204_3789242_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP008697.1_3790252_3790537_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP008697.1_3790538_3791456_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP008697.1_3791471_3792071_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP008697.1_3792057_3792732_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP008697.1_3792734_3793826_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP008697.1_3793838_3794321_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP008697.1_3794313_3795822_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP008697.1_3796236_3798903_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP008697.1_3799261_3799996_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP008697.1_3800069_3801782_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001485455.1_ASM148545v1	NZ_CP008697	Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis chromosome, complete genome	3	3815693-3816944	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	2	2	3816089-3816120|3816089-3816121	NZ_CP008697.1_3836777-3836746|NZ_CP008697.1_3836777-3836745	I-E:I-E:I-E	20,20,20	20	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	NA,NA	NA|424aa|up_9|NZ_CP008697.1_3804339_3805611_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP008697.1_3805601_3805862_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP008697.1_3805878_3806454_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP008697.1_3806600_3807461_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP008697.1_3807457_3808237_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP008697.1_3808214_3809624_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP008697.1_3809645_3811100_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP008697.1_3811169_3811955_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP008697.1_3812272_3813550_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP008697.1_3813576_3815055_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP008697.1_3817283_3817955_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP008697.1_3818248_3819121_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP008697.1_3819180_3820479_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP008697.1_3820565_3822203_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP008697.1_3822430_3823222_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP008697.1_3823293_3823629_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP008697.1_3823628_3823877_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP008697.1_3823954_3826189_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP008697.1_3826236_3827538_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP008697.1_3827594_3830351_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001485455.1_ASM148545v1	NZ_CP008697	Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis chromosome, complete genome	4	4959142-4959247	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Orphan	GGGGCAACCGTTGCGCCGTTGCCT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	NA|98aa|up_5|NZ_CP008697.1_4947588_4947882_+,NA|384aa|up_2|NZ_CP008697.1_4950723_4951875_+,NA|161aa|down_9|NZ_CP008697.1_4977348_4977831_-	NA|49aa|up_9|NZ_CP008697.1_4943809_4943956_+	COG3943, COG3943, Virulence protein [General function prediction only]	NA|395aa|up_8|NZ_CP008697.1_4944339_4945524_+	PRK15011, PRK15011, sugar efflux transporter SetB	NA|308aa|up_7|NZ_CP008697.1_4945634_4946558_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|273aa|up_6|NZ_CP008697.1_4946561_4947380_-	PRK09861, PRK09861, lipoprotein NlpA	NA|98aa|up_5|NZ_CP008697.1_4947588_4947882_+	NA	NA|166aa|up_4|NZ_CP008697.1_4948183_4948681_+	PRK15331, PRK15331, type III secretion system translocator chaperone SicA	NA|594aa|up_3|NZ_CP008697.1_4948929_4950711_+	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB	NA|384aa|up_2|NZ_CP008697.1_4950723_4951875_+	NA	NA|450aa|up_1|NZ_CP008697.1_4951918_4953268_+	TIGR02553, pathogenicity_island_1_effector_protein, type III effector protein IpaD/SipD/SspD	NA|566aa|up_0|NZ_CP008697.1_4953470_4955168_+	PRK12370, PRK12370, HilA/EilA family virulence transcriptional regulator	NA|395aa|down_0|NZ_CP008697.1_4964499_4965684_-	PRK10213, nepI, purine ribonucleoside efflux pump NepI	NA|108aa|down_1|NZ_CP008697.1_4966253_4966577_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|151aa|down_2|NZ_CP008697.1_4966692_4967145_-	pfam06711, DUF1198, Protein of unknown function (DUF1198)	NA|445aa|down_3|NZ_CP008697.1_4967197_4968532_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|589aa|down_4|NZ_CP008697.1_4968706_4970473_+	PRK10027, PRK10027, cryptic adenine deaminase; Provisional	NA|464aa|down_5|NZ_CP008697.1_4970519_4971911_-	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter	NA|440aa|down_6|NZ_CP008697.1_4972048_4973368_-	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC	NA|501aa|down_7|NZ_CP008697.1_4973377_4974880_-	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB	NA|197aa|down_8|NZ_CP008697.1_4974879_4975470_-	PRK10360, PRK10360, transcriptional regulator UhpA	NA|161aa|down_9|NZ_CP008697.1_4977348_4977831_-	NA
