assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	1	1207237-1207472	1,1	PILER-CR,CRISPRCasFinder	no	cas4	WYL,csa3,cas14j,cas4,cas9,DEDDh	Unclear	ATAATAAAATAACTATTTTACCATATAAACAATTAATAATAGGCTAAAACA,TAAACAATTAATAATAGGCTAAAAC	51,25	0	0	NA	NA	NA:NA	2,3	3	Unclear	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|76aa|up_3|NZ_CP013733.1_1205273_1205501_+,NA|77aa|up_1|NZ_CP013733.1_1206710_1206941_+,NA|163aa|down_0|NZ_CP013733.1_1207655_1208144_-,NA|205aa|down_1|NZ_CP013733.1_1208729_1209344_-,NA|520aa|down_4|NZ_CP013733.1_1211179_1212739_-,NA|60aa|down_6|NZ_CP013733.1_1213711_1213891_-,NA|142aa|down_7|NZ_CP013733.1_1213890_1214316_-,NA|82aa|down_9|NZ_CP013733.1_1214835_1215081_-	NA|222aa|up_9|NZ_CP013733.1_1198344_1199010_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|399aa|up_8|NZ_CP013733.1_1199058_1200255_-	PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase; Provisional	NA|411aa|up_7|NZ_CP013733.1_1200254_1201487_-	COG3401, COG3401, Fibronectin type 3 domain-containing protein [General function prediction only]	NA|322aa|up_6|NZ_CP013733.1_1201434_1202400_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|367aa|up_5|NZ_CP013733.1_1202478_1203579_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|400aa|up_4|NZ_CP013733.1_1203926_1205126_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|76aa|up_3|NZ_CP013733.1_1205273_1205501_+	NA	NA|313aa|up_2|NZ_CP013733.1_1205543_1206482_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|77aa|up_1|NZ_CP013733.1_1206710_1206941_+	NA	NA|76aa|up_0|NZ_CP013733.1_1206953_1207181_+	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins	NA|163aa|down_0|NZ_CP013733.1_1207655_1208144_-	NA	NA|205aa|down_1|NZ_CP013733.1_1208729_1209344_-	NA	NA|122aa|down_2|NZ_CP013733.1_1209363_1209729_-	pfam10686, DUF2493, Protein of unknown function (DUF2493)	NA|389aa|down_3|NZ_CP013733.1_1209965_1211132_-	TIGR01391, DNA_primase, DNA primase, catalytic core	NA|520aa|down_4|NZ_CP013733.1_1211179_1212739_-	NA	NA|261aa|down_5|NZ_CP013733.1_1212899_1213682_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|60aa|down_6|NZ_CP013733.1_1213711_1213891_-	NA	NA|142aa|down_7|NZ_CP013733.1_1213890_1214316_-	NA	NA|124aa|down_8|NZ_CP013733.1_1214477_1214849_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|82aa|down_9|NZ_CP013733.1_1214835_1215081_-	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	2	1222149-1222345	2	CRISPRCasFinder	no	cas4,cas9	WYL,csa3,cas14j,cas4,cas9,DEDDh	Type II-C,Type II-A,Type II-B	ACCCTACTCACATTCCAACCTGAAATATCTTGGTTGAAAGCATGGCA	47	0	0	NA	NA	NA	1	1	TypeII-C,TypeII-A,TypeII-B	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|100aa|up_9|NZ_CP013733.1_1216157_1216457_-,NA|126aa|up_8|NZ_CP013733.1_1216522_1216900_-,NA|204aa|up_7|NZ_CP013733.1_1216987_1217599_-,NA|138aa|up_6|NZ_CP013733.1_1217689_1218103_-,NA|202aa|up_5|NZ_CP013733.1_1218118_1218724_-,NA|83aa|up_3|NZ_CP013733.1_1219876_1220125_-,NA|209aa|up_2|NZ_CP013733.1_1220138_1220765_-,NA|278aa|up_1|NZ_CP013733.1_1220779_1221613_-,NA|72aa|up_0|NZ_CP013733.1_1221614_1221830_-,NA|195aa|down_0|NZ_CP013733.1_1222637_1223222_-,NA|97aa|down_2|NZ_CP013733.1_1224391_1224682_-,NA|69aa|down_3|NZ_CP013733.1_1224937_1225144_-,NA|150aa|down_5|NZ_CP013733.1_1226226_1226676_-,NA|230aa|down_7|NZ_CP013733.1_1228846_1229536_+,NA|70aa|down_9|NZ_CP013733.1_1230714_1230924_+	NA|100aa|up_9|NZ_CP013733.1_1216157_1216457_-	NA	NA|126aa|up_8|NZ_CP013733.1_1216522_1216900_-	NA	NA|204aa|up_7|NZ_CP013733.1_1216987_1217599_-	NA	NA|138aa|up_6|NZ_CP013733.1_1217689_1218103_-	NA	NA|202aa|up_5|NZ_CP013733.1_1218118_1218724_-	NA	cas4|320aa|up_4|NZ_CP013733.1_1218822_1219782_-	PHA01622, PHA01622, CRISPR-associated Cas4-like protein	NA|83aa|up_3|NZ_CP013733.1_1219876_1220125_-	NA	NA|209aa|up_2|NZ_CP013733.1_1220138_1220765_-	NA	NA|278aa|up_1|NZ_CP013733.1_1220779_1221613_-	NA	NA|72aa|up_0|NZ_CP013733.1_1221614_1221830_-	NA	NA|195aa|down_0|NZ_CP013733.1_1222637_1223222_-	NA	NA|299aa|down_1|NZ_CP013733.1_1223358_1224255_-	pfam03837, RecT, RecT family	NA|97aa|down_2|NZ_CP013733.1_1224391_1224682_-	NA	NA|69aa|down_3|NZ_CP013733.1_1224937_1225144_-	NA	NA|153aa|down_4|NZ_CP013733.1_1225249_1225708_-	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|150aa|down_5|NZ_CP013733.1_1226226_1226676_-	NA	NA|190aa|down_6|NZ_CP013733.1_1228009_1228579_-	pfam12844, HTH_19, Helix-turn-helix domain	NA|230aa|down_7|NZ_CP013733.1_1228846_1229536_+	NA	NA|183aa|down_8|NZ_CP013733.1_1229554_1230103_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|70aa|down_9|NZ_CP013733.1_1230714_1230924_+	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	3	1240527-1240761	2,1,3	PILER-CR,CRT,CRISPRCasFinder	no	cas9	WYL,csa3,cas14j,cas4,cas9,DEDDh	Type II-C, or Type II-C?,Type II-A,Type II-B, Type II-B	TATTTTACCATATAAACAATTAATAATAGGCTAAAAC,ATTTTACCATATAAACAATTAATAATAGGCTAAAAC,CATATAAACAATTAATAATAGGCTAAAA	37,36,28	0	0	NA	NA	NA:NA:NA	2,3,3	3	TypeII-C,orTypeII-C?,TypeII-A,TypeII-B,TypeII-B	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|70aa|up_9|NZ_CP013733.1_1230714_1230924_+,NA|99aa|up_5|NZ_CP013733.1_1235458_1235755_+,NA|72aa|up_2|NZ_CP013733.1_1237103_1237319_+,NA|90aa|up_1|NZ_CP013733.1_1237320_1237590_+,NA|107aa|down_0|NZ_CP013733.1_1240781_1241102_-,NA|114aa|down_1|NZ_CP013733.1_1241091_1241433_-,NA|149aa|down_2|NZ_CP013733.1_1241434_1241881_-,NA|132aa|down_3|NZ_CP013733.1_1241870_1242266_-,NA|131aa|down_4|NZ_CP013733.1_1242267_1242660_-,NA|81aa|down_7|NZ_CP013733.1_1244653_1244896_-,NA|166aa|down_8|NZ_CP013733.1_1245510_1246008_-,NA|67aa|down_9|NZ_CP013733.1_1246021_1246222_-	NA|70aa|up_9|NZ_CP013733.1_1230714_1230924_+	NA	NA|247aa|up_8|NZ_CP013733.1_1230941_1231682_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|456aa|up_7|NZ_CP013733.1_1231696_1233064_+	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|802aa|up_6|NZ_CP013733.1_1233056_1235462_+	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	NA|99aa|up_5|NZ_CP013733.1_1235458_1235755_+	NA	NA|147aa|up_4|NZ_CP013733.1_1235751_1236192_+	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|299aa|up_3|NZ_CP013733.1_1236210_1237107_+	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|72aa|up_2|NZ_CP013733.1_1237103_1237319_+	NA	NA|90aa|up_1|NZ_CP013733.1_1237320_1237590_+	NA	cas9|966aa|up_0|NZ_CP013733.1_1237570_1240468_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|107aa|down_0|NZ_CP013733.1_1240781_1241102_-	NA	NA|114aa|down_1|NZ_CP013733.1_1241091_1241433_-	NA	NA|149aa|down_2|NZ_CP013733.1_1241434_1241881_-	NA	NA|132aa|down_3|NZ_CP013733.1_1241870_1242266_-	NA	NA|131aa|down_4|NZ_CP013733.1_1242267_1242660_-	NA	NA|282aa|down_5|NZ_CP013733.1_1242676_1243522_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|335aa|down_6|NZ_CP013733.1_1243536_1244541_-	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|81aa|down_7|NZ_CP013733.1_1244653_1244896_-	NA	NA|166aa|down_8|NZ_CP013733.1_1245510_1246008_-	NA	NA|67aa|down_9|NZ_CP013733.1_1246021_1246222_-	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	4	1264220-1264394	3,4	PILER-CR,CRISPRCasFinder	no		WYL,csa3,cas14j,cas4,cas9,DEDDh	Orphan	ATTTTATCATACAAACAATTAATAATAGGCTAAACTAAAACTTT,ATTTTATCATACAAACAATTAATAATAGGCTAAA	44,34	0	0	NA	NA	NA:NA	2,2	2	Orphan	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|81aa|up_9|NZ_CP013733.1_1255909_1256152_+,NA|283aa|up_3|NZ_CP013733.1_1261111_1261960_+,NA|76aa|down_0|NZ_CP013733.1_1265396_1265624_+,NA|65aa|down_2|NZ_CP013733.1_1266120_1266315_+,NA|107aa|down_3|NZ_CP013733.1_1266451_1266772_+,NA|75aa|down_5|NZ_CP013733.1_1270093_1270318_+,NA|77aa|down_7|NZ_CP013733.1_1271528_1271759_+	NA|81aa|up_9|NZ_CP013733.1_1255909_1256152_+	NA	NA|257aa|up_8|NZ_CP013733.1_1256984_1257755_+	pfam13728, TraF, F plasmid transfer operon protein	NA|225aa|up_7|NZ_CP013733.1_1257767_1258442_+	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|333aa|up_6|NZ_CP013733.1_1258458_1259457_+	pfam06834, TraU, TraU protein	NA|221aa|up_5|NZ_CP013733.1_1259479_1260142_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|315aa|up_4|NZ_CP013733.1_1260157_1261102_+	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|283aa|up_3|NZ_CP013733.1_1261111_1261960_+	NA	NA|261aa|up_2|NZ_CP013733.1_1261946_1262729_+	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|143aa|up_1|NZ_CP013733.1_1262741_1263170_+	COG2143, COG2143, Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]	NA|336aa|up_0|NZ_CP013733.1_1263171_1264179_+	pfam12873, DUF3825, Domain of unknown function (DUF3825)	NA|76aa|down_0|NZ_CP013733.1_1265396_1265624_+	NA	NA|120aa|down_1|NZ_CP013733.1_1265627_1265987_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|65aa|down_2|NZ_CP013733.1_1266120_1266315_+	NA	NA|107aa|down_3|NZ_CP013733.1_1266451_1266772_+	NA	NA|943aa|down_4|NZ_CP013733.1_1266792_1269621_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|75aa|down_5|NZ_CP013733.1_1270093_1270318_+	NA	NA|313aa|down_6|NZ_CP013733.1_1270360_1271299_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|77aa|down_7|NZ_CP013733.1_1271528_1271759_+	NA	NA|76aa|down_8|NZ_CP013733.1_1271771_1271999_+	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins	NA|90aa|down_9|NZ_CP013733.1_1272895_1273165_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	5	1385297-1385532	4,5	PILER-CR,CRISPRCasFinder	no	cas4	WYL,csa3,cas14j,cas4,cas9,DEDDh	Unclear	ATAATAAAATAACTATTTTACCATATAAACAATTAATAATAGGCTAAAACA,TAAACAATTAATAATAGGCTAAAAC	51,25	0	0	NA	NA	NA:NA	2,3	3	Unclear	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|211aa|up_8|NZ_CP013733.1_1373955_1374588_+,NA|71aa|up_4|NZ_CP013733.1_1382202_1382415_+,NA|75aa|up_3|NZ_CP013733.1_1383335_1383560_+,NA|77aa|up_1|NZ_CP013733.1_1384770_1385001_+,NA|163aa|down_0|NZ_CP013733.1_1385715_1386204_-,NA|205aa|down_1|NZ_CP013733.1_1386789_1387404_-,NA|520aa|down_4|NZ_CP013733.1_1389239_1390799_-,NA|60aa|down_6|NZ_CP013733.1_1391771_1391951_-,NA|142aa|down_7|NZ_CP013733.1_1391950_1392376_-,NA|82aa|down_9|NZ_CP013733.1_1392895_1393141_-	NA|117aa|up_9|NZ_CP013733.1_1373605_1373956_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|211aa|up_8|NZ_CP013733.1_1373955_1374588_+	NA	NA|839aa|up_7|NZ_CP013733.1_1374731_1377248_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|346aa|up_6|NZ_CP013733.1_1377268_1378306_+	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|253aa|up_5|NZ_CP013733.1_1381433_1382192_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|71aa|up_4|NZ_CP013733.1_1382202_1382415_+	NA	NA|75aa|up_3|NZ_CP013733.1_1383335_1383560_+	NA	NA|313aa|up_2|NZ_CP013733.1_1383602_1384541_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|77aa|up_1|NZ_CP013733.1_1384770_1385001_+	NA	NA|76aa|up_0|NZ_CP013733.1_1385013_1385241_+	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins	NA|163aa|down_0|NZ_CP013733.1_1385715_1386204_-	NA	NA|205aa|down_1|NZ_CP013733.1_1386789_1387404_-	NA	NA|122aa|down_2|NZ_CP013733.1_1387423_1387789_-	pfam10686, DUF2493, Protein of unknown function (DUF2493)	NA|389aa|down_3|NZ_CP013733.1_1388025_1389192_-	TIGR01391, DNA_primase, DNA primase, catalytic core	NA|520aa|down_4|NZ_CP013733.1_1389239_1390799_-	NA	NA|261aa|down_5|NZ_CP013733.1_1390959_1391742_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|60aa|down_6|NZ_CP013733.1_1391771_1391951_-	NA	NA|142aa|down_7|NZ_CP013733.1_1391950_1392376_-	NA	NA|124aa|down_8|NZ_CP013733.1_1392537_1392909_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|82aa|down_9|NZ_CP013733.1_1392895_1393141_-	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	6	1400209-1400405	6	CRISPRCasFinder	no	cas4,cas9	WYL,csa3,cas14j,cas4,cas9,DEDDh	Type II-C,Type II-A,Type II-B	ACCCTACTCACATTCCAACCTGAAATATCTTGGTTGAAAGCATGGCA	47	0	0	NA	NA	NA	1	1	TypeII-C,TypeII-A,TypeII-B	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|100aa|up_9|NZ_CP013733.1_1394217_1394517_-,NA|126aa|up_8|NZ_CP013733.1_1394582_1394960_-,NA|204aa|up_7|NZ_CP013733.1_1395047_1395659_-,NA|138aa|up_6|NZ_CP013733.1_1395749_1396163_-,NA|202aa|up_5|NZ_CP013733.1_1396178_1396784_-,NA|83aa|up_3|NZ_CP013733.1_1397936_1398185_-,NA|209aa|up_2|NZ_CP013733.1_1398198_1398825_-,NA|278aa|up_1|NZ_CP013733.1_1398839_1399673_-,NA|72aa|up_0|NZ_CP013733.1_1399674_1399890_-,NA|195aa|down_0|NZ_CP013733.1_1400697_1401282_-,NA|97aa|down_2|NZ_CP013733.1_1402451_1402742_-,NA|69aa|down_3|NZ_CP013733.1_1402997_1403204_-,NA|150aa|down_5|NZ_CP013733.1_1404286_1404736_-,NA|230aa|down_7|NZ_CP013733.1_1406906_1407596_+,NA|70aa|down_9|NZ_CP013733.1_1408774_1408984_+	NA|100aa|up_9|NZ_CP013733.1_1394217_1394517_-	NA	NA|126aa|up_8|NZ_CP013733.1_1394582_1394960_-	NA	NA|204aa|up_7|NZ_CP013733.1_1395047_1395659_-	NA	NA|138aa|up_6|NZ_CP013733.1_1395749_1396163_-	NA	NA|202aa|up_5|NZ_CP013733.1_1396178_1396784_-	NA	cas4|320aa|up_4|NZ_CP013733.1_1396882_1397842_-	PHA01622, PHA01622, CRISPR-associated Cas4-like protein	NA|83aa|up_3|NZ_CP013733.1_1397936_1398185_-	NA	NA|209aa|up_2|NZ_CP013733.1_1398198_1398825_-	NA	NA|278aa|up_1|NZ_CP013733.1_1398839_1399673_-	NA	NA|72aa|up_0|NZ_CP013733.1_1399674_1399890_-	NA	NA|195aa|down_0|NZ_CP013733.1_1400697_1401282_-	NA	NA|299aa|down_1|NZ_CP013733.1_1401418_1402315_-	pfam03837, RecT, RecT family	NA|97aa|down_2|NZ_CP013733.1_1402451_1402742_-	NA	NA|69aa|down_3|NZ_CP013733.1_1402997_1403204_-	NA	NA|153aa|down_4|NZ_CP013733.1_1403309_1403768_-	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|150aa|down_5|NZ_CP013733.1_1404286_1404736_-	NA	NA|190aa|down_6|NZ_CP013733.1_1406069_1406639_-	pfam12844, HTH_19, Helix-turn-helix domain	NA|230aa|down_7|NZ_CP013733.1_1406906_1407596_+	NA	NA|183aa|down_8|NZ_CP013733.1_1407614_1408163_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|70aa|down_9|NZ_CP013733.1_1408774_1408984_+	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	7	1418587-1418821	5,2,7	PILER-CR,CRT,CRISPRCasFinder	no	cas9	WYL,csa3,cas14j,cas4,cas9,DEDDh	Type II-C, or Type II-C?,Type II-A,Type II-B, Type II-B	TATTTTACCATATAAACAATTAATAATAGGCTAAAAC,ATTTTACCATATAAACAATTAATAATAGGCTAAAAC,CATATAAACAATTAATAATAGGCTAAAA	37,36,28	0	0	NA	NA	NA:NA:NA	2,3,3	3	TypeII-C,orTypeII-C?,TypeII-A,TypeII-B,TypeII-B	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|70aa|up_9|NZ_CP013733.1_1408774_1408984_+,NA|99aa|up_5|NZ_CP013733.1_1413518_1413815_+,NA|72aa|up_2|NZ_CP013733.1_1415163_1415379_+,NA|90aa|up_1|NZ_CP013733.1_1415380_1415650_+,NA|107aa|down_0|NZ_CP013733.1_1418841_1419162_-,NA|114aa|down_1|NZ_CP013733.1_1419151_1419493_-,NA|149aa|down_2|NZ_CP013733.1_1419494_1419941_-,NA|132aa|down_3|NZ_CP013733.1_1419930_1420326_-,NA|131aa|down_4|NZ_CP013733.1_1420327_1420720_-,NA|81aa|down_7|NZ_CP013733.1_1422713_1422956_-,NA|166aa|down_8|NZ_CP013733.1_1423570_1424068_-,NA|67aa|down_9|NZ_CP013733.1_1424081_1424282_-	NA|70aa|up_9|NZ_CP013733.1_1408774_1408984_+	NA	NA|247aa|up_8|NZ_CP013733.1_1409001_1409742_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|456aa|up_7|NZ_CP013733.1_1409756_1411124_+	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|802aa|up_6|NZ_CP013733.1_1411116_1413522_+	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	NA|99aa|up_5|NZ_CP013733.1_1413518_1413815_+	NA	NA|147aa|up_4|NZ_CP013733.1_1413811_1414252_+	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|299aa|up_3|NZ_CP013733.1_1414270_1415167_+	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|72aa|up_2|NZ_CP013733.1_1415163_1415379_+	NA	NA|90aa|up_1|NZ_CP013733.1_1415380_1415650_+	NA	cas9|966aa|up_0|NZ_CP013733.1_1415630_1418528_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|107aa|down_0|NZ_CP013733.1_1418841_1419162_-	NA	NA|114aa|down_1|NZ_CP013733.1_1419151_1419493_-	NA	NA|149aa|down_2|NZ_CP013733.1_1419494_1419941_-	NA	NA|132aa|down_3|NZ_CP013733.1_1419930_1420326_-	NA	NA|131aa|down_4|NZ_CP013733.1_1420327_1420720_-	NA	NA|282aa|down_5|NZ_CP013733.1_1420736_1421582_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|335aa|down_6|NZ_CP013733.1_1421596_1422601_-	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|81aa|down_7|NZ_CP013733.1_1422713_1422956_-	NA	NA|166aa|down_8|NZ_CP013733.1_1423570_1424068_-	NA	NA|67aa|down_9|NZ_CP013733.1_1424081_1424282_-	NA
GCF_001483845.1_ASM148384v1	NZ_CP013733	Campylobacter coli strain OR12, complete genome	8	1442280-1442454	6,8	PILER-CR,CRISPRCasFinder	no		WYL,csa3,cas14j,cas4,cas9,DEDDh	Orphan	ATTTTATCATACAAACAATTAATAATAGGCTAAACTAAAACTTT,ATTTTATCATACAAACAATTAATAATAGGCTAAA	44,34	0	0	NA	NA	NA:NA	2,2	2	Orphan	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|81aa|up_9|NZ_CP013733.1_1433969_1434212_+,NA|283aa|up_3|NZ_CP013733.1_1439171_1440020_+,NA|76aa|down_0|NZ_CP013733.1_1443456_1443684_+,NA|65aa|down_2|NZ_CP013733.1_1444180_1444375_+,NA|107aa|down_3|NZ_CP013733.1_1444511_1444832_+,NA|60aa|down_5|NZ_CP013733.1_1447921_1448101_-,NA|112aa|down_7|NZ_CP013733.1_1450819_1451155_-,NA|119aa|down_8|NZ_CP013733.1_1451141_1451498_-,NA|397aa|down_9|NZ_CP013733.1_1451485_1452676_-	NA|81aa|up_9|NZ_CP013733.1_1433969_1434212_+	NA	NA|257aa|up_8|NZ_CP013733.1_1435044_1435815_+	pfam13728, TraF, F plasmid transfer operon protein	NA|225aa|up_7|NZ_CP013733.1_1435827_1436502_+	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|333aa|up_6|NZ_CP013733.1_1436518_1437517_+	pfam06834, TraU, TraU protein	NA|221aa|up_5|NZ_CP013733.1_1437539_1438202_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|315aa|up_4|NZ_CP013733.1_1438217_1439162_+	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|283aa|up_3|NZ_CP013733.1_1439171_1440020_+	NA	NA|261aa|up_2|NZ_CP013733.1_1440006_1440789_+	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|143aa|up_1|NZ_CP013733.1_1440801_1441230_+	COG2143, COG2143, Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]	NA|336aa|up_0|NZ_CP013733.1_1441231_1442239_+	pfam12873, DUF3825, Domain of unknown function (DUF3825)	NA|76aa|down_0|NZ_CP013733.1_1443456_1443684_+	NA	NA|120aa|down_1|NZ_CP013733.1_1443687_1444047_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|65aa|down_2|NZ_CP013733.1_1444180_1444375_+	NA	NA|107aa|down_3|NZ_CP013733.1_1444511_1444832_+	NA	NA|943aa|down_4|NZ_CP013733.1_1444852_1447681_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|60aa|down_5|NZ_CP013733.1_1447921_1448101_-	NA	NA|722aa|down_6|NZ_CP013733.1_1448657_1450823_-	PRK12355, PRK12355, type-F conjugative transfer system mating-pair stabilization protein TraN	NA|112aa|down_7|NZ_CP013733.1_1450819_1451155_-	NA	NA|119aa|down_8|NZ_CP013733.1_1451141_1451498_-	NA	NA|397aa|down_9|NZ_CP013733.1_1451485_1452676_-	NA
GCF_001483845.1_ASM148384v1	NZ_CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	1	20703-21031	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	TATAATCGCAAAATGTCGGTATAATA,TTAAGCTTTTTATAAGTCGCAAAATGTCGGTATAACTCGCAAAATGTCGG	26,50	0	0	NA	NA	NA:NA	1,2	2	Orphan	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|175aa|up_9|NZ_CP013734.1_14330_14855_+,NA|171aa|up_8|NZ_CP013734.1_14848_15361_+,NA|125aa|up_7|NZ_CP013734.1_15456_15831_+,NA|163aa|up_6|NZ_CP013734.1_15841_16330_+,NA|172aa|up_5|NZ_CP013734.1_16460_16976_+,NA|101aa|up_4|NZ_CP013734.1_17157_17460_+,NA|78aa|up_3|NZ_CP013734.1_17568_17802_+,NA|210aa|up_1|NZ_CP013734.1_18959_19589_+,NA|268aa|down_3|NZ_CP013734.1_24659_25463_+,NA|143aa|down_4|NZ_CP013734.1_26700_27129_+,NA|115aa|down_5|NZ_CP013734.1_27599_27944_+,NA|102aa|down_6|NZ_CP013734.1_27957_28263_+,NA|73aa|down_7|NZ_CP013734.1_28274_28493_+,NA|145aa|down_8|NZ_CP013734.1_28555_28990_+,NA|144aa|down_9|NZ_CP013734.1_28976_29408_+	NA|175aa|up_9|NZ_CP013734.1_14330_14855_+	NA	NA|171aa|up_8|NZ_CP013734.1_14848_15361_+	NA	NA|125aa|up_7|NZ_CP013734.1_15456_15831_+	NA	NA|163aa|up_6|NZ_CP013734.1_15841_16330_+	NA	NA|172aa|up_5|NZ_CP013734.1_16460_16976_+	NA	NA|101aa|up_4|NZ_CP013734.1_17157_17460_+	NA	NA|78aa|up_3|NZ_CP013734.1_17568_17802_+	NA	NA|223aa|up_2|NZ_CP013734.1_18281_18950_+	cd02042, ParAB_family, partition proteins ParAB family	NA|210aa|up_1|NZ_CP013734.1_18959_19589_+	NA	NA|280aa|up_0|NZ_CP013734.1_19605_20445_-	pfam01051, Rep_3, Initiator Replication protein	NA|374aa|down_0|NZ_CP013734.1_21655_22777_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|319aa|down_1|NZ_CP013734.1_22773_23730_+	pfam07996, T4SS, Type IV secretion system proteins	NA|261aa|down_2|NZ_CP013734.1_23844_24627_+	pfam07424, TrbM, TrbM	NA|268aa|down_3|NZ_CP013734.1_24659_25463_+	NA	NA|143aa|down_4|NZ_CP013734.1_26700_27129_+	NA	NA|115aa|down_5|NZ_CP013734.1_27599_27944_+	NA	NA|102aa|down_6|NZ_CP013734.1_27957_28263_+	NA	NA|73aa|down_7|NZ_CP013734.1_28274_28493_+	NA	NA|145aa|down_8|NZ_CP013734.1_28555_28990_+	NA	NA|144aa|down_9|NZ_CP013734.1_28976_29408_+	NA
GCF_001483845.1_ASM148384v1	NZ_CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	1	3640-3738	1	CRISPRCasFinder	no			Orphan	AAACTATTCTATTTATGTCAATTTT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|88aa|up_2|NZ_CP013735.1_1347_1611_+,NA|70aa|up_1|NZ_CP013735.1_1770_1980_-,NA|151aa|down_2|NZ_CP013735.1_6135_6588_-,NA|85aa|down_3|NZ_CP013735.1_6565_6820_-,NA|108aa|down_6|NZ_CP013735.1_7900_8224_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|411aa|up_3|NZ_CP013735.1_0_1233_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|88aa|up_2|NZ_CP013735.1_1347_1611_+	NA	NA|70aa|up_1|NZ_CP013735.1_1770_1980_-	NA	NA|391aa|up_0|NZ_CP013735.1_2129_3302_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|73aa|down_0|NZ_CP013735.1_4029_4248_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|598aa|down_1|NZ_CP013735.1_4338_6132_+	pfam13481, AAA_25, AAA domain	NA|151aa|down_2|NZ_CP013735.1_6135_6588_-	NA	NA|85aa|down_3|NZ_CP013735.1_6565_6820_-	NA	NA|205aa|down_4|NZ_CP013735.1_6921_7536_-	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|126aa|down_5|NZ_CP013735.1_7532_7910_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|108aa|down_6|NZ_CP013735.1_7900_8224_-	NA	NA|88aa|down_7|NZ_CP013735.1_8394_8658_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|923aa|down_8|NZ_CP013735.1_8676_11445_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|186aa|down_9|NZ_CP013735.1_11455_12013_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)
GCF_001483845.1_ASM148384v1	NZ_CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	2	3954-4019	2	CRISPRCasFinder	no			Orphan	AAACTATTCTATTTATGTCAATTTT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas14j,cas4,cas9,DEDDh	NA|88aa|up_2|NZ_CP013735.1_1347_1611_+,NA|70aa|up_1|NZ_CP013735.1_1770_1980_-,NA|151aa|down_2|NZ_CP013735.1_6135_6588_-,NA|85aa|down_3|NZ_CP013735.1_6565_6820_-,NA|108aa|down_6|NZ_CP013735.1_7900_8224_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|411aa|up_3|NZ_CP013735.1_0_1233_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|88aa|up_2|NZ_CP013735.1_1347_1611_+	NA	NA|70aa|up_1|NZ_CP013735.1_1770_1980_-	NA	NA|391aa|up_0|NZ_CP013735.1_2129_3302_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|73aa|down_0|NZ_CP013735.1_4029_4248_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|598aa|down_1|NZ_CP013735.1_4338_6132_+	pfam13481, AAA_25, AAA domain	NA|151aa|down_2|NZ_CP013735.1_6135_6588_-	NA	NA|85aa|down_3|NZ_CP013735.1_6565_6820_-	NA	NA|205aa|down_4|NZ_CP013735.1_6921_7536_-	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|126aa|down_5|NZ_CP013735.1_7532_7910_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|108aa|down_6|NZ_CP013735.1_7900_8224_-	NA	NA|88aa|down_7|NZ_CP013735.1_8394_8658_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|923aa|down_8|NZ_CP013735.1_8676_11445_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|186aa|down_9|NZ_CP013735.1_11455_12013_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)
