The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	465468	472891	2905347		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|465468_465852_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_026749861.1|465873_466857_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_026749862.1|466871_467885_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|468093_469584_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|469595_470420_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_023549061.1|470432_470741_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003732712.1|470801_471206_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_077944318.1|471334_472891_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	6.6e-17
>prophage 2
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	604805	664296	2905347	tRNA,protease	Bacillus_virus(16.67%)	59	NA	NA
WP_054314298.1|604805_605945_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_054314297.1|606025_606421_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|606571_606787_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003732794.1|606905_607439_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|607456_608122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014601429.1|608383_608737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_140442807.1|609018_609321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|609435_610719_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|610904_612164_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_009924620.1|612282_612849_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|612883_613453_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|613554_614097_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|614106_614970_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|614966_615752_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|615885_616746_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|617017_619096_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_009924616.1|619158_620463_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|620745_621648_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|621668_622208_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|622221_623631_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
WP_003726695.1|623651_624431_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_012951573.1|624533_624953_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|624975_625287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009932949.1|625289_626162_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_054314295.1|626203_626800_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003732802.1|626957_627365_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003723731.1|627545_629513_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	6.7e-123
WP_031659513.1|629509_631969_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	3.6e-102
WP_003723733.1|632051_632519_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_010989724.1|632848_634630_+	lmo1289 family class 1 internalin	NA	NA	NA	NA	NA
WP_054314294.1|634961_636758_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_012951576.1|636791_638660_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	31.9	6.5e-43
WP_003723737.1|638872_639571_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	32.4	1.3e-12
WP_003723738.1|639803_641480_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_012951578.1|641605_642523_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|642645_642879_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_072219379.1|642989_644213_+	GTPase HflX	NA	NA	NA	NA	NA
WP_054314292.1|644205_645432_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|645635_646004_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|646074_647409_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003723436.1|647552_648848_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	61.6	1.8e-145
WP_003723437.1|648891_649413_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|649442_650057_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003723439.1|650213_650543_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_014601966.1|650634_650862_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_031645059.1|651008_653003_+	transketolase	NA	NA	NA	NA	NA
WP_003723442.1|653223_653463_+	YneF family protein	NA	NA	NA	NA	NA
WP_054314291.1|653513_654356_-	DUF2785 domain-containing protein	NA	NA	NA	NA	NA
WP_003723444.1|654374_655106_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	59.1	1.2e-80
WP_003723445.1|655127_655634_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	4.0e-56
WP_003723446.1|655643_656948_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	9.5e-134
WP_072217143.1|656937_658143_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	47.1	3.7e-92
WP_003723448.1|658120_658495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|658787_659516_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|659515_660073_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003732812.1|660302_661061_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003727496.1|661074_661863_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010989733.1|661877_663020_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003723454.1|663033_664296_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 3
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	1157121	1165407	2905347		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1157121_1157688_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_009933235.1|1157684_1158734_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
WP_058877360.1|1158752_1160180_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.7	5.3e-53
WP_014602076.1|1160164_1162384_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	1.3e-159
WP_003733240.1|1162376_1163060_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_015454911.1|1163063_1163309_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_054314363.1|1163320_1164034_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	5.1e-41
WP_003733238.1|1164114_1165407_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 4
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	1680101	1720815	2905347	tail,terminase,holin	Listeria_phage(94.83%)	65	NA	NA
WP_047934317.1|1680101_1680335_-	hypothetical protein	NA	A8ATX0	Listeria_phage	97.4	6.1e-36
WP_058877365.1|1680774_1680984_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	97.1	2.7e-27
WP_012581436.1|1681089_1681467_+	anti-CRISPR protein AcrIIA3	NA	Q9T194	Listeria_phage	99.2	1.3e-67
WP_012581437.1|1681498_1681849_+	AcrIIA2 family anti-CRISPR protein	NA	Q9T195	Listeria_phage	98.3	1.2e-56
WP_047933338.1|1681853_1682303_+	anti-CRISPR protein AcrIIA1	NA	Q9T196	Listeria_phage	98.0	1.3e-74
WP_003723292.1|1682374_1682974_-	N-acetyltransferase	NA	Q9T197	Listeria_phage	100.0	1.0e-111
WP_054314418.1|1683375_1684221_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	92.2	3.8e-136
WP_014929558.1|1684220_1684502_-|holin	phage holin	holin	A8ATW3	Listeria_phage	98.9	6.7e-45
WP_003733957.1|1684501_1684807_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_058877366.1|1684858_1687021_-	hypothetical protein	NA	A8ATW1	Listeria_phage	98.5	0.0e+00
WP_026747248.1|1687033_1688602_-	hypothetical protein	NA	A8ATW0	Listeria_phage	99.0	5.8e-303
WP_054314419.1|1688598_1693398_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	89.2	0.0e+00
WP_077914498.1|1693402_1693714_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	97.8	4.5e-42
WP_026750198.1|1693710_1694142_-	hypothetical protein	NA	A8ATV7	Listeria_phage	99.3	4.7e-74
WP_012951935.1|1694197_1694884_-	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	97.4	2.6e-114
WP_003725064.1|1694888_1695260_-	hypothetical protein	NA	A8ATV5	Listeria_phage	100.0	8.5e-64
WP_012951936.1|1695256_1695574_-	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	98.1	2.4e-51
WP_026750199.1|1695563_1695929_-	hypothetical protein	NA	A8ATV3	Listeria_phage	95.0	2.1e-62
WP_003723785.1|1695928_1696282_-	hypothetical protein	NA	A8ATV2	Listeria_phage	99.1	8.4e-61
WP_026750200.1|1696469_1697342_-	hypothetical protein	NA	A8ATV0	Listeria_phage	99.0	7.9e-161
WP_003744996.1|1697364_1697919_-	hypothetical protein	NA	A8ATU9	Listeria_phage	99.5	1.1e-88
WP_003753503.1|1698014_1699058_-	hypothetical protein	NA	A0A0B5D111	Listeria_phage	98.8	5.1e-199
WP_026750201.1|1699062_1700619_-	hypothetical protein	NA	A8ATU7	Listeria_phage	98.8	2.9e-299
WP_054314420.1|1700633_1701953_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	88.7	6.2e-234
WP_026750203.1|1701891_1702677_-	hypothetical protein	NA	A8ATU5	Listeria_phage	97.1	5.0e-130
WP_012951944.1|1702716_1702944_-	hypothetical protein	NA	A8AU06	Listeria_phage	100.0	1.5e-34
WP_015987428.1|1703024_1703657_-	hypothetical protein	NA	A8AU05	Listeria_phage	100.0	1.1e-114
WP_026750204.1|1703838_1704273_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	97.2	5.3e-73
WP_026750205.1|1704413_1704797_-	DUF2481 family protein	NA	A0A0B5CU14	Listeria_phage	96.9	4.4e-63
WP_026750206.1|1704800_1705205_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	89.6	1.5e-61
WP_031669838.1|1705149_1705332_-	hypothetical protein	NA	A8ASP6	Listeria_phage	77.8	3.2e-16
WP_026750207.1|1705350_1705833_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	98.1	1.0e-80
WP_026750208.1|1705829_1706231_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	76.7	4.9e-49
WP_026750209.1|1706227_1706587_-	hypothetical protein	NA	A0A059T801	Listeria_phage	92.0	3.8e-45
WP_026750210.1|1706608_1706869_-	DUF3850 domain-containing protein	NA	A0A059T699	Listeria_phage	77.0	1.1e-25
WP_026750211.1|1706861_1707197_-	hypothetical protein	NA	A8ATZ5	Listeria_phage	93.1	4.6e-08
WP_049948461.1|1707177_1707414_-	hypothetical protein	NA	A0A059T6G5	Listeria_phage	89.9	3.1e-27
WP_026750212.1|1707413_1707602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026750213.1|1707598_1708156_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	49.8	3.1e-41
WP_026750214.1|1708152_1708530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026750215.1|1708526_1709510_-	DNA cytosine methyltransferase	NA	H7BVD3	unidentified_phage	38.1	1.2e-48
WP_026750216.1|1709509_1709974_-	class I SAM-dependent methyltransferase	NA	A8ATY8	Listeria_phage	100.0	9.6e-89
WP_026750217.1|1709970_1710945_-	DnaD domain protein	NA	A8ASN4	Listeria_phage	92.9	4.1e-166
WP_026750218.1|1710961_1711621_-	ERF family protein	NA	A8ASN3	Listeria_phage	91.3	5.0e-91
WP_012951957.1|1711626_1712103_-	siphovirus Gp157 family protein	NA	A0A059T5F1	Listeria_phage	100.0	9.5e-76
WP_003734953.1|1712099_1712294_-	hypothetical protein	NA	A0A059T6E8	Listeria_phage	100.0	1.6e-29
WP_157862701.1|1712389_1712530_-	hypothetical protein	NA	A0A059T7Q6	Listeria_phage	97.6	9.4e-16
WP_003722564.1|1712599_1712788_-	hypothetical protein	NA	Q9T175	Listeria_phage	82.3	1.8e-22
WP_023548459.1|1712896_1713112_-	hypothetical protein	NA	Q9T176	Listeria_phage	93.0	9.7e-28
WP_012951959.1|1713108_1713642_-	hypothetical protein	NA	A0A059T5F0	Listeria_phage	87.9	1.5e-77
WP_026750219.1|1713767_1714547_-	antirepressor	NA	A0A0B5CTU1	Listeria_phage	97.7	6.9e-140
WP_003733685.1|1714528_1714804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026750220.1|1715088_1715325_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	98.7	9.6e-37
WP_026750221.1|1715389_1715749_+	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	26.3	4.6e-06
WP_003733687.1|1715707_1715902_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	1.4e-25
WP_026750222.1|1715966_1716233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023548448.1|1716255_1716429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731220.1|1716432_1716684_-	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	100.0	7.6e-40
WP_026750223.1|1716832_1717141_+	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	99.0	2.7e-47
WP_012951966.1|1717171_1717663_+	hypothetical protein	NA	A8ATX4	Listeria_phage	99.4	2.9e-91
WP_003727739.1|1717685_1717904_+	zinc-ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	100.0	5.4e-34
WP_023548440.1|1717918_1718524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047934404.1|1718587_1719946_+	recombinase family protein	NA	Q8LTD8	Listeria_phage	98.7	1.7e-255
WP_054314421.1|1719936_1720413_+	competence protein ComK	NA	NA	NA	NA	NA
WP_003739618.1|1720467_1720815_-	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
>prophage 5
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	1864103	1871947	2905347		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|1864103_1865075_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_054314442.1|1865082_1866051_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|1866052_1866928_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_031645160.1|1867035_1868766_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	3.3e-174
WP_003734087.1|1868807_1869869_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_054314441.1|1869885_1870869_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.9	7.6e-51
WP_003722610.1|1870987_1871947_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 6
NZ_CP013723	Listeria monocytogenes strain Lm 3136 chromosome, complete genome	2905347	2382613	2389138	2905347	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|2382613_2383066_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|2383071_2383407_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|2383623_2384052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732220.1|2384063_2384480_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_003732221.1|2384757_2385147_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|2385159_2385672_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|2385719_2386022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077944101.1|2386063_2386468_+	phenylalanine racemase	NA	NA	NA	NA	NA
WP_054314464.1|2386454_2388323_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|2388319_2389138_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
