assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	1	1169301-1169395	1	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,DEDDh	Orphan	CCTCCGCCTGCGAGGGCTTGTTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,DEDDh	NA|65aa|up_7|NZ_CP013254.1_1153729_1153924_+,NA|116aa|up_0|NZ_CP013254.1_1162576_1162924_-,NA	NA|428aa|up_9|NZ_CP013254.1_1151709_1152993_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|214aa|up_8|NZ_CP013254.1_1153044_1153686_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|65aa|up_7|NZ_CP013254.1_1153729_1153924_+	NA	NA|284aa|up_6|NZ_CP013254.1_1153953_1154805_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|288aa|up_5|NZ_CP013254.1_1154807_1155671_+	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|187aa|up_4|NZ_CP013254.1_1156483_1157044_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|708aa|up_3|NZ_CP013254.1_1157254_1159378_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|413aa|up_2|NZ_CP013254.1_1159426_1160665_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|526aa|up_1|NZ_CP013254.1_1160768_1162346_+	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis	NA|116aa|up_0|NZ_CP013254.1_1162576_1162924_-	NA	NA|271aa|down_0|NZ_CP013254.1_1169652_1170465_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|313aa|down_1|NZ_CP013254.1_1170582_1171521_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|263aa|down_2|NZ_CP013254.1_1171656_1172445_+	PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional	NA|157aa|down_3|NZ_CP013254.1_1172441_1172912_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|211aa|down_4|NZ_CP013254.1_1172908_1173541_+	pfam12277, DUF3618, Protein of unknown function (DUF3618)	NA|275aa|down_5|NZ_CP013254.1_1173695_1174520_-	cd01823, SEST_like, SEST_like	NA|339aa|down_6|NZ_CP013254.1_1174574_1175591_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|244aa|down_7|NZ_CP013254.1_1175752_1176484_+	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	NA|184aa|down_8|NZ_CP013254.1_1176562_1177114_+	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|217aa|down_9|NZ_CP013254.1_1177306_1177957_+	pfam01613, Flavin_Reduct, Flavin reductase like domain
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	2	1742269-1742418	1	PILER-CR	no	cas3	csa3,cas3,DinG,WYL,DEDDh	Unclear	CCTGCGTCCGCCGAGTCCCCACCGTGCC	28	2	2	1742301-1742342|1742375-1742405	NZ_CP013254.1_1742898-1742857|NZ_CP013254.1_1742825-1742795	NA	2	2	Unclear	csa3,cas3,DinG,WYL,DEDDh	NA|146aa|up_9|NZ_CP013254.1_1731668_1732106_-,NA|89aa|up_3|NZ_CP013254.1_1738740_1739007_-,NA|156aa|down_6|NZ_CP013254.1_1756036_1756504_-,NA|87aa|down_8|NZ_CP013254.1_1757464_1757725_-,NA|121aa|down_9|NZ_CP013254.1_1757721_1758084_-	NA|146aa|up_9|NZ_CP013254.1_1731668_1732106_-	NA	NA|219aa|up_8|NZ_CP013254.1_1732906_1733563_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|594aa|up_7|NZ_CP013254.1_1733640_1735422_-	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|387aa|up_6|NZ_CP013254.1_1735498_1736659_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|217aa|up_5|NZ_CP013254.1_1736741_1737392_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|447aa|up_4|NZ_CP013254.1_1737388_1738729_-	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	NA|89aa|up_3|NZ_CP013254.1_1738740_1739007_-	NA	NA|274aa|up_2|NZ_CP013254.1_1739466_1740288_-	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|340aa|up_1|NZ_CP013254.1_1740280_1741300_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|243aa|up_0|NZ_CP013254.1_1741488_1742217_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|1356aa|down_0|NZ_CP013254.1_1745965_1750033_+	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function	NA|445aa|down_1|NZ_CP013254.1_1750022_1751357_+	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|377aa|down_2|NZ_CP013254.1_1751609_1752740_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|106aa|down_3|NZ_CP013254.1_1752775_1753093_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|842aa|down_4|NZ_CP013254.1_1753085_1755611_+	pfam02318, FYVE_2, FYVE-type zinc finger	NA|101aa|down_5|NZ_CP013254.1_1755703_1756006_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|156aa|down_6|NZ_CP013254.1_1756036_1756504_-	NA	NA|128aa|down_7|NZ_CP013254.1_1756710_1757094_-	pfam04120, Iron_permease, Low affinity iron permease	NA|87aa|down_8|NZ_CP013254.1_1757464_1757725_-	NA	NA|121aa|down_9|NZ_CP013254.1_1757721_1758084_-	NA
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3	1745440-1745507	2	CRISPRCasFinder	no	cas3	csa3,cas3,DinG,WYL,DEDDh	Unclear	CGTCCGGCACCCGTGGGGGCCGGGG	25	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,DinG,WYL,DEDDh	NA|146aa|up_9|NZ_CP013254.1_1731668_1732106_-,NA|89aa|up_3|NZ_CP013254.1_1738740_1739007_-,NA|156aa|down_6|NZ_CP013254.1_1756036_1756504_-,NA|87aa|down_8|NZ_CP013254.1_1757464_1757725_-,NA|121aa|down_9|NZ_CP013254.1_1757721_1758084_-	NA|146aa|up_9|NZ_CP013254.1_1731668_1732106_-	NA	NA|219aa|up_8|NZ_CP013254.1_1732906_1733563_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|594aa|up_7|NZ_CP013254.1_1733640_1735422_-	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|387aa|up_6|NZ_CP013254.1_1735498_1736659_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|217aa|up_5|NZ_CP013254.1_1736741_1737392_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|447aa|up_4|NZ_CP013254.1_1737388_1738729_-	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	NA|89aa|up_3|NZ_CP013254.1_1738740_1739007_-	NA	NA|274aa|up_2|NZ_CP013254.1_1739466_1740288_-	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|340aa|up_1|NZ_CP013254.1_1740280_1741300_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|243aa|up_0|NZ_CP013254.1_1741488_1742217_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|1356aa|down_0|NZ_CP013254.1_1745965_1750033_+	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function	NA|445aa|down_1|NZ_CP013254.1_1750022_1751357_+	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|377aa|down_2|NZ_CP013254.1_1751609_1752740_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|106aa|down_3|NZ_CP013254.1_1752775_1753093_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|842aa|down_4|NZ_CP013254.1_1753085_1755611_+	pfam02318, FYVE_2, FYVE-type zinc finger	NA|101aa|down_5|NZ_CP013254.1_1755703_1756006_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|156aa|down_6|NZ_CP013254.1_1756036_1756504_-	NA	NA|128aa|down_7|NZ_CP013254.1_1756710_1757094_-	pfam04120, Iron_permease, Low affinity iron permease	NA|87aa|down_8|NZ_CP013254.1_1757464_1757725_-	NA	NA|121aa|down_9|NZ_CP013254.1_1757721_1758084_-	NA
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	4	1953613-1953719	3	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,DEDDh	Orphan	CGCGAGGGTGGTGCCGGGTCGCGTCAGGGCGGCCGGGACGA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,DEDDh	NA,NA|57aa|down_1|NZ_CP013254.1_1956057_1956228_+	NA|507aa|up_9|NZ_CP013254.1_1933035_1934556_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|558aa|up_8|NZ_CP013254.1_1934688_1936362_-	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase	NA|404aa|up_7|NZ_CP013254.1_1936647_1937859_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|483aa|up_6|NZ_CP013254.1_1938001_1939450_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|239aa|up_5|NZ_CP013254.1_1939446_1940163_+	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG)	NA|176aa|up_4|NZ_CP013254.1_1940173_1940701_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|753aa|up_3|NZ_CP013254.1_1940871_1943130_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|437aa|up_2|NZ_CP013254.1_1943184_1944495_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|167aa|up_1|NZ_CP013254.1_1951074_1951575_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|423aa|up_0|NZ_CP013254.1_1951686_1952955_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|335aa|down_0|NZ_CP013254.1_1954972_1955977_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|57aa|down_1|NZ_CP013254.1_1956057_1956228_+	NA	NA|254aa|down_2|NZ_CP013254.1_1956224_1956986_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|602aa|down_3|NZ_CP013254.1_1958127_1959933_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|568aa|down_4|NZ_CP013254.1_1959990_1961694_+	PRK05380, pyrG, CTP synthetase; Validated	NA|218aa|down_5|NZ_CP013254.1_1961792_1962446_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|315aa|down_6|NZ_CP013254.1_1962724_1963669_+	PRK00283, xerD, tyrosine recombinase	NA|391aa|down_7|NZ_CP013254.1_1963817_1964990_+	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|384aa|down_8|NZ_CP013254.1_1965025_1966177_-	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|303aa|down_9|NZ_CP013254.1_1966215_1967124_-	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	5	2660449-2660528	4	CRISPRCasFinder	no	csa3	csa3,cas3,DinG,WYL,DEDDh	Type I-A	GGCCCGTCGACGCCCTCGAGCAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,DEDDh	NA|491aa|up_9|NZ_CP013254.1_2647234_2648707_+,NA|168aa|up_5|NZ_CP013254.1_2653492_2653996_+,NA|212aa|up_2|NZ_CP013254.1_2656333_2656969_+,NA|81aa|up_1|NZ_CP013254.1_2656968_2657211_+,NA|84aa|down_1|NZ_CP013254.1_2661893_2662145_-	NA|491aa|up_9|NZ_CP013254.1_2647234_2648707_+	NA	NA|504aa|up_8|NZ_CP013254.1_2650058_2651570_+	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|418aa|up_7|NZ_CP013254.1_2651651_2652905_-	TIGR00900, multidrug_transporter, H+ Antiporter protein	csa3|112aa|up_6|NZ_CP013254.1_2652950_2653286_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|168aa|up_5|NZ_CP013254.1_2653492_2653996_+	NA	NA|596aa|up_4|NZ_CP013254.1_2653992_2655780_+	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|149aa|up_3|NZ_CP013254.1_2655867_2656314_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|212aa|up_2|NZ_CP013254.1_2656333_2656969_+	NA	NA|81aa|up_1|NZ_CP013254.1_2656968_2657211_+	NA	NA|153aa|up_0|NZ_CP013254.1_2659212_2659671_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|247aa|down_0|NZ_CP013254.1_2661133_2661874_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|84aa|down_1|NZ_CP013254.1_2661893_2662145_-	NA	NA|454aa|down_2|NZ_CP013254.1_2662267_2663629_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|420aa|down_3|NZ_CP013254.1_2663625_2664885_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|524aa|down_4|NZ_CP013254.1_2665153_2666725_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|86aa|down_5|NZ_CP013254.1_2666869_2667127_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|104aa|down_6|NZ_CP013254.1_2667188_2667500_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|526aa|down_7|NZ_CP013254.1_2667724_2669302_-	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA|247aa|down_8|NZ_CP013254.1_2669298_2670039_-	PRK00043, thiE, thiamine phosphate synthase	NA|290aa|down_9|NZ_CP013254.1_2670035_2670905_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated
GCF_001482365.1_ASM148236v1	NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	6	3184204-3184329	5	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,DEDDh	Orphan	GGACCGGCGCACCCGGCGCTGAGCCGGGCCGGCACCGCCGTCGTCCCC	48	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,DEDDh	NA|198aa|up_5|NZ_CP013254.1_3176859_3177453_-,NA	NA|304aa|up_9|NZ_CP013254.1_3172730_3173642_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|344aa|up_8|NZ_CP013254.1_3173857_3174889_+	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase	NA|355aa|up_7|NZ_CP013254.1_3175049_3176114_-	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|200aa|up_6|NZ_CP013254.1_3176143_3176743_-	pfam08768, DUF1794, Domain of unknown function (DUF1794)	NA|198aa|up_5|NZ_CP013254.1_3176859_3177453_-	NA	NA|229aa|up_4|NZ_CP013254.1_3177645_3178332_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|317aa|up_3|NZ_CP013254.1_3178389_3179340_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|732aa|up_2|NZ_CP013254.1_3179417_3181613_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|352aa|up_1|NZ_CP013254.1_3181767_3182823_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|280aa|up_0|NZ_CP013254.1_3182855_3183695_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|141aa|down_0|NZ_CP013254.1_3184401_3184824_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|383aa|down_1|NZ_CP013254.1_3184834_3185983_+	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|129aa|down_2|NZ_CP013254.1_3186008_3186395_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|372aa|down_3|NZ_CP013254.1_3186691_3187807_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|161aa|down_4|NZ_CP013254.1_3187868_3188351_-	cd03453, SAV4209_like, SAV4209_like	NA|150aa|down_5|NZ_CP013254.1_3188347_3188797_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|145aa|down_6|NZ_CP013254.1_3189347_3189782_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|315aa|down_7|NZ_CP013254.1_3189836_3190781_-	pfam01636, APH, Phosphotransferase enzyme family	NA|625aa|down_8|NZ_CP013254.1_3191480_3193355_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|418aa|down_9|NZ_CP013254.1_3193351_3194605_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
