The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3504335	600767	672925	3504335	integrase,tRNA,protease,transposase	Mycobacterium_phage(17.65%)	60	610252:610268	662927:662943
WP_058857563.1|600767_601556_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_058857564.1|601722_602268_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	42.9	3.7e-23
WP_058857565.1|602426_603299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058857566.1|603396_604716_-	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_058859689.1|605286_605646_-	DUF3566 domain-containing protein	NA	NA	NA	NA	NA
WP_058857567.1|605891_608579_-	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	28.4	2.3e-89
WP_058857568.1|608669_610739_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	42.8	6.1e-127
610252:610268	attL	CCGGCCTCGAGCGGGCC	NA	NA	NA	NA
WP_058859690.1|611112_611652_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_058857569.1|611807_613013_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_058857570.1|613048_614173_-	DNA polymerase III subunit beta	NA	A0A0A7HEW5	Arthrobacter_phage	35.5	2.3e-56
WP_147050353.1|614855_616424_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_083529203.1|616995_617133_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_058857571.1|617180_617573_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_058857572.1|617569_618010_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_058857573.1|618006_618993_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_058859692.1|619082_619682_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_058857574.1|619678_620350_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_169798011.1|620772_621582_+	ParA family protein	NA	Q8JL10	Natrialba_phage	37.4	1.2e-22
WP_083529530.1|622618_623962_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_058857577.1|624057_625263_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_058857578.1|625375_625711_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	51.0	3.5e-24
WP_083529205.1|625839_626871_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	46.8	2.0e-70
WP_058857579.1|626995_628417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857580.1|628576_630199_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_058857581.1|630326_630827_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_058859694.1|630953_632366_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A249XS88	Mycobacterium_phage	35.6	5.9e-57
WP_058857582.1|632362_633802_+	DUF2029 domain-containing protein	NA	NA	NA	NA	NA
WP_147050351.1|633864_634944_+	DUF2029 domain-containing protein	NA	NA	NA	NA	NA
WP_058857584.1|635123_636134_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_058857585.1|636130_637150_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_058857586.1|637279_638419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058857587.1|638390_640982_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_058857588.1|641028_642177_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.6	1.1e-24
WP_058857589.1|642173_643907_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_058857590.1|643903_644932_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_083529206.1|645080_645491_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_083529531.1|645808_646075_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_058857592.1|646297_646603_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_058857593.1|646710_647364_+	single-stranded DNA-binding protein	NA	A0A0U4B2E8	Arthrobacter_phage	86.9	1.3e-54
WP_058857594.1|647441_647678_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_058857595.1|647698_648148_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_058857596.1|648248_648905_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_058857597.1|649051_649360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157570910.1|649528_650110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857599.1|650358_651792_-	amidase	NA	NA	NA	NA	NA
WP_058857600.1|651850_652435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147050349.1|652686_655488_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	29.6	3.5e-61
WP_058857602.1|655472_656078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857603.1|656074_656440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857604.1|658241_658874_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	44.1	4.0e-29
WP_058857605.1|658887_660345_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_083529208.1|660331_661252_+	AAA family ATPase	NA	A0A2K9VH00	Faecalibacterium_phage	24.1	5.1e-09
WP_058857606.1|661477_662923_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.5	4.2e-42
WP_058857607.1|663035_664424_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
662927:662943	attR	CCGGCCTCGAGCGGGCC	NA	NA	NA	NA
WP_083529209.1|664515_664905_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_058857608.1|665108_666158_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_058859636.1|666353_667619_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	40.0	2.1e-69
WP_058857610.1|668535_669783_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	41.3	2.6e-80
WP_058857611.1|670571_671354_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	32.9	8.2e-24
WP_058857612.1|671350_672925_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3504335	1456529	1466145	3504335		Bacillus_phage(25.0%)	12	NA	NA
WP_083529295.1|1456529_1457207_-	uracil-DNA glycosylase	NA	A0A0M3MXW7	Testudinid_herpesvirus	44.7	1.9e-29
WP_058858180.1|1457298_1458000_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_058858181.1|1457996_1458356_+	DUF3263 domain-containing protein	NA	A0A0A7RXU7	Mycobacterium_phage	53.7	1.8e-10
WP_058858182.1|1458352_1458583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058858183.1|1458631_1459276_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_058858184.1|1459528_1461160_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.3	6.5e-148
WP_058858185.1|1461322_1462030_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	44.7	6.3e-15
WP_058858186.1|1462074_1463049_+	DUF4440 domain-containing protein	NA	J9Q745	Salmonella_phage	43.4	8.1e-21
WP_058859776.1|1463059_1464475_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.9	1.1e-23
WP_058858187.1|1464537_1465251_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.3	1.2e-34
WP_058858188.1|1465330_1465567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058858189.1|1465761_1466145_+	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	39.7	2.0e-07
>prophage 3
NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3504335	2102330	2109570	3504335	tRNA	Orpheovirus(33.33%)	8	NA	NA
WP_058858624.1|2102330_2103251_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	27.6	6.9e-06
WP_058858625.1|2103247_2104825_+	methyltransferase	NA	NA	NA	NA	NA
WP_058858626.1|2104859_2105525_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_101853168.1|2105893_2106907_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	30.8	3.2e-28
WP_058858628.1|2106993_2107695_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	36.0	2.8e-15
WP_083529369.1|2107694_2108354_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2I2L4Y7	Orpheovirus	44.0	1.4e-37
WP_083529370.1|2108350_2109094_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.0	1.8e-33
WP_058858629.1|2109090_2109570_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	36.6	1.6e-14
>prophage 4
NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3504335	2316394	2351510	3504335	transposase	Corynebacterium_phage(16.67%)	27	NA	NA
WP_101851091.1|2316394_2317227_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157570925.1|2317368_2317542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058857610.1|2317531_2318779_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	41.3	2.6e-80
WP_157570926.1|2318812_2319088_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_083529395.1|2320406_2321375_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	44.4	7.8e-24
WP_058858778.1|2321810_2322755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_058858779.1|2322804_2323767_+	nitrilase	NA	M1HHT1	Paramecium_bursaria_Chlorella_virus	29.2	1.7e-07
WP_058858780.1|2323892_2324168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058858781.1|2324164_2325463_+	SufS family cysteine desulfurase	NA	Q2XUY6	environmental_halophage	40.5	7.3e-86
WP_058858782.1|2325459_2325921_+	SUF system NifU family Fe-S cluster assembly protein	NA	V5R992	Mycobacterium_phage	40.3	4.1e-15
WP_058858783.1|2326165_2327644_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_058858784.1|2327868_2328900_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_083529396.1|2329048_2329897_-	ROK family protein	NA	NA	NA	NA	NA
WP_058858785.1|2329961_2331023_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_058858786.1|2330983_2332711_-	glycoside hydrolase family 13 protein	NA	NA	NA	NA	NA
WP_058858787.1|2333005_2334142_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	36.5	9.8e-18
WP_058858788.1|2334185_2335421_+	maltose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_058858789.1|2335420_2337055_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_058859878.1|2337203_2338106_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_083529398.1|2338198_2341717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058858791.1|2341798_2342044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857746.1|2342569_2344129_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_058858792.1|2345505_2346513_+	phosphotransferase	NA	NA	NA	NA	NA
WP_058858795.1|2347383_2348271_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_058858796.1|2348650_2349289_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_058858797.1|2349574_2349859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058859879.1|2350301_2351510_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013254	Kocuria flava strain HO-9041 chromosome, complete genome	3504335	3311418	3372326	3504335	integrase,transposase,protease	Mycobacterium_phage(42.86%)	54	3311873:3311889	3374302:3374318
WP_058859481.1|3311418_3312588_-|protease	MarP family serine protease	protease	NA	NA	NA	NA
3311873:3311889	attL	ACCGGCTCCTGCACCCC	NA	NA	NA	NA
WP_058859482.1|3312859_3313537_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_058859987.1|3313652_3314528_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_058859483.1|3314550_3315045_-	RidA family protein	NA	NA	NA	NA	NA
WP_058859484.1|3315070_3315265_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_058859485.1|3315357_3317517_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_147050316.1|3317517_3318447_+	metallophosphoesterase family protein	NA	NA	NA	NA	NA
WP_169798003.1|3318486_3319296_-	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_058859487.1|3319412_3322244_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_058859488.1|3322340_3322787_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_058859489.1|3322916_3323924_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_058859490.1|3323932_3324592_+	cyclase family protein	NA	NA	NA	NA	NA
WP_147050314.1|3324608_3325304_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_058859491.1|3325319_3326687_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_058859492.1|3326828_3328412_-	M28 family peptidase	NA	NA	NA	NA	NA
WP_058859493.1|3329013_3329247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058859494.1|3329359_3330079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058859495.1|3330113_3331580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157570930.1|3331732_3331897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058857610.1|3331934_3333182_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	41.3	2.6e-80
WP_083529491.1|3333278_3333899_-	class F sortase	NA	NA	NA	NA	NA
WP_058859497.1|3333903_3334779_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_058859636.1|3334942_3336208_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	40.0	2.1e-69
WP_058859498.1|3336340_3337255_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_058859499.1|3337254_3338766_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_058859500.1|3338762_3339992_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_058859501.1|3339988_3340735_-	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_058859502.1|3340789_3341806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058859503.1|3341793_3342165_-	pilus assembly protein	NA	NA	NA	NA	NA
WP_058859504.1|3342270_3342492_-	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_058859990.1|3342830_3344180_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	96.7	2.1e-224
WP_058859505.1|3344265_3345105_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	96.1	1.0e-160
WP_058859506.1|3345352_3346081_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_147050494.1|3346413_3347391_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_083529609.1|3347458_3348667_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_058859509.1|3348855_3349641_+	VOC family protein	NA	NA	NA	NA	NA
WP_058859510.1|3349700_3350354_-	LUD domain-containing protein	NA	NA	NA	NA	NA
WP_058859511.1|3351990_3352839_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_058859512.1|3353065_3354736_+	L-lactate permease	NA	NA	NA	NA	NA
WP_058859513.1|3354928_3355726_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_058859514.1|3356147_3356846_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_157570931.1|3357048_3357201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147050491.1|3357232_3358465_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_083529492.1|3358416_3358863_+	MGMT family protein	NA	NA	NA	NA	NA
WP_058859516.1|3358908_3359886_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	33.4	7.0e-41
WP_058859517.1|3359882_3361202_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_058859518.1|3361317_3362349_+	asparaginase	NA	NA	NA	NA	NA
WP_058859519.1|3362353_3362719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058859520.1|3362729_3363122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083529493.1|3363127_3364897_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	29.0	1.5e-44
WP_058859521.1|3366212_3366434_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_058859522.1|3366729_3369345_-	ATP-dependent chaperone ClpB	NA	A0A1C3S747	Escherichia_phage	36.4	1.2e-122
WP_058859523.1|3369600_3370335_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
WP_058859524.1|3370331_3372326_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
3374302:3374318	attR	ACCGGCTCCTGCACCCC	NA	NA	NA	NA
