assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001482345.1_ASM148234v1	NZ_CP013711	Klebsiella pneumoniae strain J1 chromosome, complete genome	1	488093-488187	1	CRISPRCasFinder	no		WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|256aa|up_9|NZ_CP013711.1_473412_474180_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_8|NZ_CP013711.1_474308_475154_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|570aa|up_7|NZ_CP013711.1_475491_477201_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP013711.1_477211_478714_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP013711.1_478851_479547_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP013711.1_479722_482080_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP013711.1_482267_485174_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP013711.1_485186_485846_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP013711.1_485920_486460_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP013711.1_486639_488004_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP013711.1_488328_489954_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP013711.1_489943_490642_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP013711.1_490674_491502_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP013711.1_491745_494094_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP013711.1_494148_495435_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP013711.1_495440_496430_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP013711.1_496426_497248_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP013711.1_497250_497628_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP013711.1_497632_498481_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP013711.1_498732_499212_-	PRK10769, folA, type 3 dihydrofolate reductase
GCF_001482345.1_ASM148234v1	NZ_CP013711	Klebsiella pneumoniae strain J1 chromosome, complete genome	2	3725544-3725621	2	CRISPRCasFinder	no		WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	AAGGCGTCAGCCGCCACCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP013711.1_3732224_3732437_-	NA|362aa|up_9|NZ_CP013711.1_3709326_3710412_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP013711.1_3710945_3711377_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP013711.1_3711428_3714116_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP013711.1_3715668_3716952_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NZ_CP013711.1_3717106_3718426_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP013711.1_3718422_3719379_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP013711.1_3719440_3720166_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NZ_CP013711.1_3721058_3721997_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP013711.1_3721993_3723520_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP013711.1_3723618_3725001_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP013711.1_3725775_3726252_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP013711.1_3726322_3727612_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP013711.1_3727825_3728866_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP013711.1_3728862_3730020_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP013711.1_3730003_3730759_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP013711.1_3730751_3731474_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP013711.1_3731415_3732138_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP013711.1_3732224_3732437_-	NA	NA|674aa|down_8|NZ_CP013711.1_3732848_3734870_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NZ_CP013711.1_3735118_3736216_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_001482345.1_ASM148234v1	NZ_CP013711	Klebsiella pneumoniae strain J1 chromosome, complete genome	3	5072009-5073012	1,3,1,2	CRT,CRISPRCasFinder,PILER-CR,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,GGAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	16,15,12,12	16	TypeI-E	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_0|NZ_CP013711.1_5070715_5071831_-,NA	NA|77aa|up_9|NZ_CP013711.1_5062817_5063048_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP013711.1_5063044_5063782_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP013711.1_5063831_5064491_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP013711.1_5064487_5065111_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NZ_CP013711.1_5065194_5066535_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP013711.1_5066545_5068330_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP013711.1_5068332_5069088_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP013711.1_5069589_5069961_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP013711.1_5070021_5070705_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP013711.1_5070715_5071831_-	NA	cas2|96aa|down_0|NZ_CP013711.1_5073059_5073347_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP013711.1_5073324_5074200_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NZ_CP013711.1_5074199_5074916_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP013711.1_5074928_5075963_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP013711.1_5075992_5076640_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP013711.1_5076632_5077199_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP013711.1_5077210_5078734_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP013711.1_5078737_5081353_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP013711.1_5082472_5083543_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP013711.1_5083535_5085305_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_001482345.1_ASM148234v1	NZ_CP013711	Klebsiella pneumoniae strain J1 chromosome, complete genome	4	5081766-5082220	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	7,7,7	7	TypeI-E	WYL,RT,DEDDh,cas3,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_8|NZ_CP013711.1_5070715_5071831_-,NA	NA|228aa|up_9|NZ_CP013711.1_5070021_5070705_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP013711.1_5070715_5071831_-	NA	cas2|96aa|up_7|NZ_CP013711.1_5073059_5073347_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP013711.1_5073324_5074200_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|up_5|NZ_CP013711.1_5074199_5074916_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP013711.1_5074928_5075963_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP013711.1_5075992_5076640_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP013711.1_5076632_5077199_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP013711.1_5077210_5078734_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP013711.1_5078737_5081353_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP013711.1_5082472_5083543_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP013711.1_5083535_5085305_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP013711.1_5085379_5086468_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP013711.1_5086770_5087850_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP013711.1_5088096_5090247_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_5|NZ_CP013711.1_5090289_5090451_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP013711.1_5091742_5092942_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP013711.1_5093058_5093493_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP013711.1_5094058_5095291_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP013711.1_5095327_5095720_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
