The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	2143066	2195820	6431911	tRNA,tail,plate	uncultured_Caudovirales_phage(29.17%)	55	NA	NA
WP_003099590.1|2143066_2144092_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.1	1.4e-108
WP_003085061.1|2144170_2144740_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003099587.1|2144823_2145177_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003142783.1|2145167_2145710_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003099584.1|2145682_2146915_-	multifunctional CCA addition/repair protein	NA	A0A076G5T8	Escherichia_phage	43.1	2.6e-77
WP_009875777.1|2146958_2147465_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003099581.1|2147558_2149112_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_003099579.1|2149108_2150380_-	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	37.2	4.2e-09
WP_003085078.1|2150480_2152403_-	PrkA family serine protein kinase	NA	NA	NA	NA	NA
WP_003099577.1|2152680_2153013_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA	NA
WP_003113213.1|2153056_2153908_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	33.3	1.1e-08
WP_003085085.1|2153907_2154288_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003099569.1|2154324_2155131_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_003109023.1|2155246_2156233_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_003109024.1|2156229_2157522_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_016852409.1|2157502_2160292_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_003099554.1|2160418_2161435_+	phosphotransferase	NA	NA	NA	NA	NA
WP_003099549.1|2161431_2162106_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003099547.1|2162107_2162866_+	DnaJ domain-containing protein	NA	NA	NA	NA	NA
WP_009875782.1|2162866_2163928_-	DUF3530 family protein	NA	NA	NA	NA	NA
WP_003109040.1|2164079_2166473_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_003099542.1|2166521_2167151_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003085106.1|2167279_2168314_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003085109.1|2168547_2169657_+	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	7.8e-28
WP_003099539.1|2169712_2170759_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003109044.1|2170871_2172119_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003099535.1|2172224_2173055_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003085122.1|2173178_2173853_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_058150026.1|2173852_2174671_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003085126.1|2174743_2176222_+	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_003113203.1|2176539_2176854_-	transcription regulatory protein PrtN	NA	NA	NA	NA	NA
WP_058150025.1|2176953_2177724_-	helix-turn-helix transcriptional regulator	NA	A0A1B0Z078	Pseudomonas_phage	59.1	1.4e-71
WP_003085132.1|2178181_2178382_+	repressor PtrB	NA	W6ATC1	Enterobacter_phage	58.3	3.7e-05
WP_003118907.1|2178429_2178789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003118908.1|2179151_2179601_+	hypothetical protein	NA	B5TK61	Pseudomonas_phage	53.3	5.0e-26
WP_003113200.1|2179622_2180138_+	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	42.9	4.1e-32
WP_003121844.1|2180134_2180692_+|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	70.3	6.0e-45
WP_003085143.1|2180844_2181171_+	hypothetical protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	60.2	3.2e-30
WP_003085151.1|2181167_2182055_+	bacteriophage protein	NA	S4TNY7	Salmonella_phage	59.8	5.3e-88
WP_003129210.1|2182047_2182581_+|tail	phage tail protein I	tail	Q9ZXK7	Pseudomonas_virus	64.0	6.7e-62
WP_031673305.1|2182582_2184658_+|tail	phage tail fiber protein	tail	Q9ZXK6	Pseudomonas_virus	49.9	1.3e-196
WP_003118913.1|2184654_2185113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003121848.1|2185155_2186316_+|tail	phage tail sheath family protein	tail	Q38068	Phage_PS17	83.4	1.2e-188
WP_003085175.1|2186328_2186832_+|tail	phage major tail tube protein	tail	Q7M2A5	Pseudomonas_phage	73.5	8.0e-65
WP_003085178.1|2186846_2187191_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_023129209.1|2187360_2189598_+|tail	phage tail length determinator protein	tail	NA	NA	NA	NA
WP_003085182.1|2189607_2190480_+|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	51.7	3.9e-75
WP_003101635.1|2190454_2190661_+	hypothetical protein	NA	A0A2H4J9Z9	uncultured_Caudovirales_phage	64.2	2.3e-18
WP_003113193.1|2190718_2191708_+	phage late control D family protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	55.8	7.5e-107
WP_058150023.1|2191740_2192370_+	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	77.5	7.9e-86
WP_004355109.1|2192366_2192729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031800321.1|2192725_2192983_+	hypothetical protein	NA	A0A125RNP3	Pseudomonas_phage	63.4	1.1e-17
WP_003101640.1|2193330_2193936_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	65.8	6.0e-75
WP_003085203.1|2193937_2194987_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	57.8	1.8e-111
WP_003085205.1|2194983_2195820_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	56.9	2.1e-70
>prophage 2
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	2357922	2398644	6431911	integrase,head,transposase	Pseudomonas_phage(90.74%)	55	2350526:2350545	2400742:2400761
2350526:2350545	attL	CGAGGAACGCCTGCACGTCG	NA	NA	NA	NA
WP_023082759.1|2357922_2359014_-	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.2	1.2e-09
WP_058836731.1|2359027_2360116_-	acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit	NA	A0A1D8EUH4	Mycobacterium_phage	38.8	3.1e-05
WP_003127781.1|2360198_2360567_-	hypothetical protein	NA	J9SGX4	Pseudomonas_phage	100.0	1.1e-63
WP_058836732.1|2360529_2361111_-	hypothetical protein	NA	J9RWB3	Pseudomonas_phage	97.8	1.0e-95
WP_014603985.1|2361110_2361677_-	regulatory protein GemA	NA	J9SVT5	Pseudomonas_phage	100.0	5.4e-102
WP_015975360.1|2361663_2362131_-	hypothetical protein	NA	Q5ZR13	Pseudomonas_phage	100.0	8.2e-80
WP_003148480.1|2362132_2362351_-	hypothetical protein	NA	J9STW0	Pseudomonas_phage	97.2	2.8e-30
WP_003094188.1|2362352_2363042_-	DUF2786 domain-containing protein	NA	Q5ZR11	Pseudomonas_phage	100.0	1.3e-126
WP_015649401.1|2363043_2363667_-	DUF3164 family protein	NA	Q5ZR10	Pseudomonas_phage	99.5	1.0e-109
WP_010791825.1|2363659_2363860_-	hypothetical protein	NA	A0A0S4L5A8	Pseudomonas_phage	98.5	3.9e-31
WP_031299623.1|2363852_2364386_-	hypothetical protein	NA	J9STN6	Pseudomonas_phage	100.0	1.1e-93
WP_031630706.1|2364375_2365056_-	hypothetical protein	NA	J9SNC1	Pseudomonas_phage	99.1	1.4e-128
WP_058181535.1|2365055_2365340_-	hypothetical protein	NA	J9SGZ7	Pseudomonas_phage	98.9	7.5e-44
WP_058836733.1|2365336_2365678_-	hypothetical protein	NA	J9RWC3	Pseudomonas_phage	93.8	4.8e-53
WP_003127825.1|2365679_2366852_-	AAA family ATPase	NA	Q5ZR05	Pseudomonas_phage	94.4	1.9e-202
WP_079755184.1|2366851_2368633_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q5ZR04	Pseudomonas_phage	99.3	0.0e+00
WP_033946007.1|2368635_2369562_-	DUF3102 domain-containing protein	NA	Q5ZR03	Pseudomonas_phage	90.9	1.9e-149
WP_015649409.1|2369572_2369881_-	helix-turn-helix domain-containing protein	NA	Q5ZR02	Pseudomonas_phage	100.0	5.4e-48
WP_003127832.1|2369873_2370359_-	hypothetical protein	NA	Q5ZR01	Pseudomonas_phage	100.0	7.4e-92
WP_046720598.1|2370482_2370707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025921029.1|2370991_2371222_-	DNA-binding protein	NA	J9RWM8	Pseudomonas_phage	90.8	1.4e-32
WP_046720599.1|2371335_2371695_+	helix-turn-helix domain-containing protein	NA	E5E3P4	Burkholderia_phage	48.5	2.2e-16
WP_033967124.1|2371711_2372215_+	hypothetical protein	NA	J9RWD8	Pseudomonas_phage	92.8	2.0e-79
WP_003138152.1|2372405_2372663_+	membrane protein	NA	J9STQ9	Pseudomonas_phage	100.0	5.6e-38
WP_024007974.1|2372820_2373450_+	transglycosylase SLT domain-containing protein	NA	J9SH25	Pseudomonas_phage	99.0	2.4e-119
WP_071538434.1|2373446_2373659_+	hypothetical protein	NA	Q5ZQZ0	Pseudomonas_phage	92.9	1.5e-28
WP_003126999.1|2373645_2374269_+	hypothetical protein	NA	J9SVX5	Pseudomonas_phage	94.2	4.1e-103
WP_003117315.1|2374268_2374589_+	DUF2730 family protein	NA	J9STR5	Pseudomonas_phage	100.0	5.1e-49
WP_003117314.1|2374585_2374888_+	hypothetical protein	NA	J9SNG3	Pseudomonas_phage	100.0	1.1e-48
WP_003117313.1|2374890_2375439_+	DUF3486 family protein	NA	J9SH37	Pseudomonas_phage	99.5	7.6e-77
WP_058181538.1|2375440_2377114_+	hypothetical protein	NA	J9RWF2	Pseudomonas_phage	99.6	0.0e+00
WP_003138157.1|2377116_2378682_+	DUF935 domain-containing protein	NA	J9SVY0	Pseudomonas_phage	96.2	2.2e-286
WP_016852447.1|2378671_2379910_+	hypothetical protein	NA	J9STS2	Pseudomonas_phage	99.5	5.8e-242
WP_016852448.1|2379911_2380487_+	phage virion morphogenesis protein	NA	J9SNH3	Pseudomonas_phage	99.0	2.9e-103
WP_003138161.1|2380697_2381807_+	hypothetical protein	NA	J9SH47	Pseudomonas_phage	99.2	2.9e-200
WP_003121593.1|2381812_2382217_+	hypothetical protein	NA	J9RWG0	Pseudomonas_phage	100.0	1.8e-67
WP_003127513.1|2382231_2383128_+|head	head protein	head	J9SVY7	Pseudomonas_phage	100.0	1.3e-171
WP_003121493.1|2383359_2383575_+	hypothetical protein	NA	J9STT1	Pseudomonas_phage	100.0	1.5e-33
WP_003121492.1|2383577_2384093_+	DUF1320 domain-containing protein	NA	J9SNI4	Pseudomonas_phage	100.0	3.5e-92
WP_003138162.1|2384089_2384542_+	hypothetical protein	NA	J9SH57	Pseudomonas_phage	99.3	2.1e-80
WP_003127509.1|2384538_2384742_+	hypothetical protein	NA	J9RWG5	Pseudomonas_phage	100.0	1.7e-29
WP_058836734.1|2384748_2385489_+	hypothetical protein	NA	J9SVZ4	Pseudomonas_phage	98.4	7.0e-134
WP_016852450.1|2385491_2385974_+	hypothetical protein	NA	J9STT8	Pseudomonas_phage	99.4	2.8e-83
WP_049967619.1|2385928_2386111_-	hypothetical protein	NA	J9SNJ6	Pseudomonas_phage	100.0	1.2e-26
WP_058836735.1|2386227_2389851_+	tape measure protein	NA	J9SH65	Pseudomonas_phage	97.8	0.0e+00
WP_058836736.1|2389858_2390815_+	hypothetical protein	NA	J9RWH1	Pseudomonas_phage	99.4	2.3e-190
WP_003094576.1|2390816_2391740_+	hypothetical protein	NA	A0A0A1IX02	Pseudomonas_phage	100.0	3.7e-185
WP_058836737.1|2391739_2393443_+	hypothetical protein	NA	A0A075CEZ1	Pseudomonas_phage	98.8	0.0e+00
WP_003117241.1|2393432_2394254_+	DUF2163 domain-containing protein	NA	L7P825	Pseudomonas_phage	100.0	6.5e-165
WP_003094581.1|2394262_2394502_+	hypothetical protein	NA	A0A0U5KN06	unidentified_phage	100.0	3.6e-39
WP_003117240.1|2394498_2394717_+	hypothetical protein	NA	A0A0U5KRQ8	unidentified_phage	100.0	2.6e-36
WP_055320592.1|2394706_2396914_+	hypothetical protein	NA	L7P7W0	Pseudomonas_phage	99.9	0.0e+00
WP_034069571.1|2396910_2398062_+	hypothetical protein	NA	L7P7J3	Pseudomonas_phage	99.7	7.6e-228
WP_016068576.1|2398058_2398346_+	hypothetical protein	NA	L7P826	Pseudomonas_phage	100.0	5.6e-47
WP_003121473.1|2398419_2398644_+	hypothetical protein	NA	A0A125RNE4	Pseudomonas_phage	100.0	5.5e-34
2400742:2400761	attR	CGACGTGCAGGCGTTCCTCG	NA	NA	NA	NA
>prophage 3
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	2978911	2987940	6431911		Bacillus_phage(33.33%)	8	NA	NA
WP_079755226.1|2978911_2979547_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.7	2.3e-40
WP_058150246.1|2979592_2980486_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0S2SXL7	Bacillus_phage	34.3	3.0e-06
WP_003113871.1|2980590_2981595_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	7.0e-36
WP_003119354.1|2982021_2982345_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_003113873.1|2982411_2984979_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.1	3.2e-24
WP_058150244.1|2985104_2986112_-	TolB family protein	NA	NA	NA	NA	NA
WP_003092262.1|2986259_2986766_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	76.0	8.1e-57
WP_003092260.1|2986899_2987940_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	59.5	1.5e-113
>prophage 4
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	3078953	3129810	6431911	capsid,terminase,integrase,tail,head	Pseudomonas_phage(75.0%)	69	3079992:3080050	3129952:3130010
WP_003092090.1|3078953_3079871_-	ornithine carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	27.6	2.0e-21
3079992:3080050	attL	ATAAGGAAATGTCGCGGAAACACAAGGAGGGGCTTGGAAGGCGCGGGTTACGGGGTTTT	NA	NA	NA	NA
WP_058836744.1|3080052_3081219_-|integrase	site-specific integrase	integrase	A0A1B0Z061	Pseudomonas_phage	98.5	4.1e-221
WP_042853643.1|3081527_3081827_-	hypothetical protein	NA	A0A125RNP8	Pseudomonas_phage	52.6	1.3e-30
WP_034057841.1|3082194_3082449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836746.1|3082448_3082694_-	hypothetical protein	NA	B5WZV5	Pseudomonas_phage	71.4	1.2e-26
WP_058836841.1|3082686_3083136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033989679.1|3083132_3083618_-	phage protein	NA	W6MVE9	Pseudomonas_phage	98.8	4.5e-89
WP_058836747.1|3083788_3084106_-	hypothetical protein	NA	A0A0U4JNZ9	Pseudomonas_phage	93.3	9.2e-51
WP_058836748.1|3084150_3084642_-	hypothetical protein	NA	A0A125RNQ6	Pseudomonas_phage	70.3	7.9e-25
WP_071536751.1|3085971_3086196_-	hypothetical protein	NA	A0A0S2SYB6	Pseudomonas_phage	97.3	1.0e-35
WP_058836749.1|3086358_3086958_-	hypothetical protein	NA	A0A0U4JEE7	Pseudomonas_phage	98.0	1.1e-108
WP_058836750.1|3087021_3087468_-	single-stranded DNA-binding protein	NA	A0A0U4K5C0	Pseudomonas_phage	91.8	5.1e-63
WP_023083007.1|3087464_3088109_-	hypothetical protein	NA	F8TUK8	EBPR_podovirus	36.0	1.0e-24
WP_058836751.1|3088105_3088855_-	single-stranded DNA-binding protein	NA	A0A125RNR3	Pseudomonas_phage	58.5	1.8e-52
WP_145902609.1|3088911_3089151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836752.1|3089432_3089729_-	hypothetical protein	NA	A0A0S2SY04	Pseudomonas_phage	51.2	1.9e-18
WP_158511584.1|3089725_3090211_-	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	1.5e-28
WP_058836753.1|3090231_3090798_-	hypothetical protein	NA	A0A291I9C8	Pseudomonas_phage	48.0	8.8e-36
WP_058836754.1|3090794_3091160_-	hypothetical protein	NA	W6MYA8	Pseudomonas_phage	95.8	1.1e-63
WP_071557630.1|3091198_3091675_-	DUF2591 family protein	NA	A0A2H4J8F6	uncultured_Caudovirales_phage	33.5	2.0e-12
WP_145902610.1|3091982_3092210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836755.1|3092860_3093571_-	LexA family transcriptional regulator	NA	B1B6L9	Salmonella_phage	38.2	2.2e-31
WP_023113651.1|3093671_3093851_+	hypothetical protein	NA	A0A0S2SYB8	Pseudomonas_phage	66.1	6.6e-14
WP_033944536.1|3093864_3094053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033944537.1|3094071_3094269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079755187.1|3094343_3095153_+	helix-turn-helix domain-containing protein	NA	B5WZX9	Pseudomonas_phage	99.6	3.4e-150
WP_058836756.1|3095152_3095803_+	Replication protein P	NA	W6MVG8	Pseudomonas_phage	98.1	3.6e-118
WP_058836757.1|3096236_3096452_+	hypothetical protein	NA	W6MW49	Pseudomonas_phage	90.1	6.5e-32
WP_003158992.1|3096700_3097102_+	NinB family protein	NA	A0A059VG13	Pseudomonas_phage	53.6	5.8e-34
WP_058836758.1|3097098_3097404_+	hypothetical protein	NA	Q9MC48	Pseudomonas_phage	41.4	1.4e-08
WP_058836759.1|3097400_3097610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025997431.1|3097606_3097909_+	hypothetical protein	NA	A0A0H5ARP9	Pseudomonas_phage	70.0	3.4e-34
WP_158511585.1|3098048_3098336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836761.1|3098332_3098716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079755189.1|3098715_3099021_+	DUF3310 domain-containing protein	NA	A0A127KNN9	Pseudomonas_phage	70.6	8.7e-22
WP_145902612.1|3099004_3099610_+	HNH endonuclease	NA	M4W6M2	Bacillus_phage	42.5	1.2e-09
WP_058836762.1|3099609_3100623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836763.1|3100619_3101192_+	hypothetical protein	NA	H2BDI9	Pseudomonas_virus	36.6	8.3e-26
WP_033943704.1|3101701_3102094_+	hypothetical protein	NA	B5WZY9	Pseudomonas_phage	98.5	1.9e-66
WP_033943960.1|3102090_3102525_+	lysozyme	NA	A0A0S2SYD0	Pseudomonas_phage	49.3	2.9e-31
WP_058836764.1|3102707_3102956_+	hypothetical protein	NA	A0A0H5AWC3	Pseudomonas_phage	53.2	2.5e-19
WP_058836765.1|3102948_3103302_+	hypothetical protein	NA	B5WZZ2	Pseudomonas_phage	90.6	6.0e-51
WP_079389667.1|3103667_3103961_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	68.8	1.2e-33
WP_049285108.1|3104103_3104544_+	hypothetical protein	NA	S4TNN3	Salmonella_phage	37.0	1.9e-09
WP_049285106.1|3104543_3106211_+|terminase	terminase large subunit	terminase	A0A2H4JDK9	uncultured_Caudovirales_phage	63.8	4.1e-182
WP_058836766.1|3106270_3108271_+|capsid	phage major capsid protein	capsid	S4TNE3	Salmonella_phage	47.2	1.8e-144
WP_058836767.1|3108315_3108612_+	hypothetical protein	NA	B5WZS0	Pseudomonas_phage	52.6	3.3e-18
WP_034061107.1|3108621_3108840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023120627.1|3111223_3111598_+|head,tail	phage gp6-like head-tail connector protein	head,tail	B5WZS4	Pseudomonas_phage	96.8	1.9e-63
WP_079755191.1|3111607_3111949_+|head	phage head closure protein	head	B5WZS5	Pseudomonas_phage	92.9	1.7e-55
WP_058836769.1|3111948_3112518_+	hypothetical protein	NA	B5WZS6	Pseudomonas_phage	92.6	9.0e-105
WP_058836770.1|3112514_3113327_+	hypothetical protein	NA	B5WZS7	Pseudomonas_phage	96.3	2.6e-158
WP_079755192.1|3113277_3113895_+	methyltransferase domain-containing protein	NA	A0A0U4IIB3	Pseudomonas_phage	76.6	3.1e-95
WP_015994276.1|3113887_3114334_+	hypothetical protein	NA	B5WZS9	Pseudomonas_phage	100.0	6.4e-66
WP_079755193.1|3114333_3114705_+	DUF3168 domain-containing protein	NA	B5WZT0	Pseudomonas_phage	98.4	1.4e-66
WP_015994278.1|3114892_3115387_+	structural protein	NA	A0A1V0E8B3	Vibrio_phage	56.1	3.7e-46
WP_058836772.1|3115396_3115759_+	hypothetical protein	NA	B5WZT2	Pseudomonas_phage	98.3	8.6e-61
WP_058836773.1|3116103_3118857_+	hypothetical protein	NA	A0A0S2SYD9	Pseudomonas_phage	40.4	9.1e-94
WP_079755194.1|3118853_3119318_+	hypothetical protein	NA	B5WZT5	Pseudomonas_phage	96.8	3.4e-86
WP_058836774.1|3119314_3119803_+	DUF1833 family protein	NA	B5WZT6	Pseudomonas_phage	96.9	4.2e-87
WP_058836775.1|3120186_3122922_+	hypothetical protein	NA	H2BDC9	Pseudomonas_virus	85.0	0.0e+00
WP_158511586.1|3122981_3124958_+	hypothetical protein	NA	Q9MC94	Pseudomonas_phage	94.6	6.8e-67
WP_079755196.1|3125035_3125818_+	AAC(3) family N-acetyltransferase	NA	NA	NA	NA	NA
WP_079755227.1|3125753_3127097_+	DUF4910 domain-containing protein	NA	NA	NA	NA	NA
WP_158511587.1|3127188_3128196_+	acyltransferase family protein	NA	A0A2H4JA46	uncultured_Caudovirales_phage	27.9	9.3e-12
WP_058836777.1|3128252_3128882_+	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	95.7	9.9e-113
WP_058836778.1|3128878_3129247_+	hypothetical protein	NA	H2BDA0	Pseudomonas_phage	82.8	3.6e-46
WP_058836779.1|3129243_3129507_+	hypothetical protein	NA	B5WZU5	Pseudomonas_phage	87.4	1.7e-34
WP_058836780.1|3129543_3129810_+	hypothetical protein	NA	L7TP56	Pseudomonas_virus	96.6	1.6e-43
3129952:3130010	attR	ATAAGGAAATGTCGCGGAAACACAAGGAGGGGCTTGGAAGGCGCGGGTTACGGGGTTTT	NA	NA	NA	NA
>prophage 5
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	3875294	3925345	6431911	portal,tRNA,protease,terminase,integrase,head	uncultured_Caudovirales_phage(25.0%)	59	3864183:3864199	3918822:3918838
3864183:3864199	attL	TGGCATCGCCGAGCGCC	NA	NA	NA	NA
WP_003090915.1|3875294_3876170_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_003115276.1|3876303_3876756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003090913.1|3876806_3878018_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003090911.1|3878202_3878601_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_003090910.1|3878712_3879198_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.0	8.1e-22
WP_003114767.1|3879194_3879686_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003158678.1|3879704_3882065_-	response regulator	NA	A0A1V0SGX0	Hokovirus	28.3	1.8e-45
WP_003143737.1|3882147_3883038_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003090905.1|3883034_3883517_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_058150833.1|3883526_3884189_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_003090903.1|3884250_3885024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014602742.1|3885979_3887557_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003090890.1|3887623_3888034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003119883.1|3888092_3888473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003108955.1|3888601_3891049_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003098789.1|3891201_3891873_+	transglutaminase family protein	NA	NA	NA	NA	NA
WP_003108953.1|3891987_3892608_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003090885.1|3892683_3893616_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.7	2.4e-22
WP_003119886.1|3893612_3894392_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_058150835.1|3894441_3895773_-	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	26.5	1.9e-12
WP_003098784.1|3895769_3896450_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.5	1.4e-27
WP_003090881.1|3896575_3896767_+	repressor PtrA	NA	NA	NA	NA	NA
WP_003119888.1|3896938_3897556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003098780.1|3897673_3898504_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A126HHM5	Vibrio_phage	37.0	1.3e-32
WP_003090878.1|3898570_3898834_-	DUF4404 family protein	NA	NA	NA	NA	NA
WP_003090877.1|3898907_3899489_-	HD domain-containing protein	NA	A0A2K9L4U0	Tupanvirus	37.1	7.7e-19
WP_003114775.1|3899485_3900229_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003104061.1|3900362_3901082_+	UTRA domain-containing protein	NA	NA	NA	NA	NA
WP_003104059.1|3901083_3901488_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003114777.1|3901590_3902295_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_003104055.1|3902352_3902652_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_054377872.1|3902898_3904083_+	SpoIIE family protein phosphatase	NA	Q56AR1	Bacillus_thuringiensis_phage	31.9	7.3e-08
WP_003104052.1|3904079_3904562_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003090868.1|3904649_3905573_-	transaldolase	NA	A0A1D8KMI9	Synechococcus_phage	30.0	6.5e-12
WP_016562059.1|3905652_3906633_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_058836845.1|3906815_3907931_+|integrase	site-specific integrase	integrase	A0A2K8I325	Pseudomonas_phage	60.0	4.8e-118
WP_058836784.1|3907904_3908180_-	Pyocin activator protein PrtN	NA	A0A2K8HN48	Pseudomonas_phage	64.3	9.8e-25
WP_124206310.1|3908972_3909611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836786.1|3909619_3910099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015649068.1|3910108_3910348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836787.1|3910344_3910971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836788.1|3911021_3911339_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_058836789.1|3911335_3911566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031641970.1|3911716_3912004_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_031641971.1|3912013_3912325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079755203.1|3912607_3913321_-	helix-turn-helix domain-containing protein	NA	F1C599	Cronobacter_phage	34.4	1.2e-21
WP_058836790.1|3913427_3913682_+	transcriptional regulator	NA	A0A2H4JA29	uncultured_Caudovirales_phage	47.1	6.5e-07
WP_019726483.1|3913998_3914553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836791.1|3914545_3914755_+	conjugal transfer protein TraR	NA	NA	NA	NA	NA
WP_058836792.1|3914718_3916965_+	toprim domain-containing protein	NA	A0A2D1GN57	Marinobacter_phage	47.5	1.3e-191
WP_058836793.1|3916961_3917333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019726481.1|3917905_3918256_+	hypothetical protein	NA	B5TK61	Pseudomonas_phage	48.6	2.8e-16
WP_058836794.1|3918252_3918990_+	hypothetical protein	NA	A0A1B0Z000	Pseudomonas_phage	47.1	6.7e-44
3918822:3918838	attR	TGGCATCGCCGAGCGCC	NA	NA	NA	NA
WP_023087718.1|3919245_3919836_+	hypothetical protein	NA	A0A2H4JG15	uncultured_Caudovirales_phage	54.5	8.8e-47
WP_058164659.1|3919839_3921855_+|terminase	phage terminase large subunit family protein	terminase	A0A2H4J898	uncultured_Caudovirales_phage	64.0	6.6e-259
WP_004353026.1|3921866_3922091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031806273.1|3922090_3923557_+|portal	phage portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	65.8	5.6e-175
WP_031806272.1|3923540_3924713_+|protease	Clp protease ClpP	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	49.1	1.7e-86
WP_058836795.1|3924709_3925345_+|head	head decoration protein	head	NA	NA	NA	NA
>prophage 6
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	3932798	3946886	6431911		Pseudomonas_phage(37.5%)	11	NA	NA
WP_031671092.1|3932798_3936350_+	hypothetical protein	NA	A0A0M4U447	Ralstonia_phage	35.1	2.0e-178
WP_016561962.1|3936349_3937351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836846.1|3937347_3938208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836797.1|3938204_3939965_+	hypothetical protein	NA	A0A2I7S8R8	Vibrio_phage	24.6	1.2e-25
WP_003096116.1|3939964_3940201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058836798.1|3940446_3941076_+	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	89.0	1.1e-103
WP_031629956.1|3941072_3941441_+	hypothetical protein	NA	A0A0S2SY58	Pseudomonas_phage	68.9	4.0e-37
WP_031629957.1|3941437_3941698_+	hypothetical protein	NA	H2BDD7	Pseudomonas_virus	75.6	2.0e-27
WP_031629961.1|3941842_3942646_+	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	64.3	2.7e-99
WP_031671087.1|3942759_3943389_+	glycoside hydrolase family 19 protein	NA	A0A125RNP1	Pseudomonas_phage	84.2	1.8e-93
WP_047568371.1|3944045_3946886_-	transporter substrate-binding domain-containing protein	NA	A0A1V0SGX0	Hokovirus	25.4	6.2e-29
>prophage 7
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	4217837	4224731	6431911	tRNA	uncultured_Caudovirales_phage(83.33%)	9	NA	NA
WP_003097631.1|4217837_4219118_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.4	8.2e-98
WP_058151069.1|4219119_4220517_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_058151067.1|4220521_4221496_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_058151064.1|4221583_4222567_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	73.7	4.6e-141
WP_003119979.1|4222563_4222899_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	69.4	1.5e-38
WP_003090391.1|4222895_4223201_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_012613994.1|4223200_4223560_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	61.7	3.1e-34
WP_003090387.1|4223556_4223952_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	72.1	2.7e-47
WP_003090386.1|4224062_4224731_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	82.1	1.5e-90
>prophage 8
NZ_CP013696	Pseudomonas aeruginosa strain 12-4-4(59) chromosome, complete genome	6431911	6373483	6384579	6431911	integrase	Pseudomonas_phage(88.89%)	17	6373125:6373154	6384863:6384892
6373125:6373154	attL	AGGGTTCGATTCCCTTCGCCCGCTCCAGAT	NA	NA	NA	NA
WP_033969043.1|6373483_6374473_-|integrase	tyrosine-type recombinase/integrase	integrase	Q56VN7	Pseudomonas_phage	52.4	1.2e-93
WP_033969041.1|6374472_6375765_-	hypothetical protein	NA	Q56VN8	Pseudomonas_phage	94.0	8.2e-247
WP_058836834.1|6376023_6377286_-	hypothetical protein	NA	Q56VN9	Pseudomonas_phage	57.0	7.5e-120
WP_003159569.1|6377287_6377638_-	DUF2523 domain-containing protein	NA	Q56VP0	Pseudomonas_phage	41.1	5.5e-20
WP_058836835.1|6377647_6378235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058836836.1|6378890_6379109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003124954.1|6379122_6379374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003115130.1|6379385_6379478_-	hypothetical protein	NA	Q56VP4	Pseudomonas_phage	100.0	7.3e-09
WP_058836837.1|6379494_6379929_-	hypothetical protein	NA	Q56VP5	Pseudomonas_phage	99.3	1.1e-62
WP_058836838.1|6380063_6380441_-	hypothetical protein	NA	Q56VP6	Pseudomonas_phage	96.8	2.0e-60
WP_031635388.1|6380444_6380735_-	DUF5447 family protein	NA	Q56VP7	Pseudomonas_phage	97.9	8.7e-56
WP_158511590.1|6380744_6380897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023086597.1|6380911_6381127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079755216.1|6381239_6381512_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_079755217.1|6381566_6382259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079755218.1|6382714_6383341_-	RloB domain-containing protein	NA	NA	NA	NA	NA
WP_079755219.1|6383343_6384579_-	ATP-binding protein	NA	V9QJ85	Oenococcus_phage	31.4	1.6e-10
6384863:6384892	attR	AGGGTTCGATTCCCTTCGCCCGCTCCAGAT	NA	NA	NA	NA
