assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001481725.1_ASM148172v1	NZ_CP011914	Eubacterium limosum strain SA11 chromosome, complete genome	1	170076-172404	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	Type I-B	GTTGAAGCTTAACATGAGATGTATTTAAA,GTTGAAGTTTAACATGAGATGTATTTAAAT,GTTGAAGNTTAACATGAGATGTATTTAAAT	29,30,30	0	0	NA	NA	II-B:II-B:II-B	34,35,35	35	TypeI-B	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	NA,NA	NA|301aa|up_9|NZ_CP011914.1_158947_159850_+	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]	NA|257aa|up_8|NZ_CP011914.1_160246_161017_+	cd01310, TatD_DNAse, TatD like proteins;  E	cas6|231aa|up_7|NZ_CP011914.1_161398_162091_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|510aa|up_6|NZ_CP011914.1_162318_163848_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|312aa|up_5|NZ_CP011914.1_163840_164776_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|249aa|up_4|NZ_CP011914.1_164777_165524_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|861aa|up_3|NZ_CP011914.1_165510_168093_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|165aa|up_2|NZ_CP011914.1_168103_168598_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|NZ_CP011914.1_168609_169608_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|97aa|up_0|NZ_CP011914.1_169604_169895_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|551aa|down_0|NZ_CP011914.1_172591_174244_-	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|264aa|down_1|NZ_CP011914.1_174689_175481_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|324aa|down_2|NZ_CP011914.1_175498_176470_-	PRK06835, PRK06835, DNA replication protein DnaC; Validated	NA|340aa|down_3|NZ_CP011914.1_176462_177482_-	pfam07261, DnaB_2, Replication initiation and membrane attachment	NA|426aa|down_4|NZ_CP011914.1_177672_178950_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|292aa|down_5|NZ_CP011914.1_178952_179828_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|263aa|down_6|NZ_CP011914.1_180010_180799_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|371aa|down_7|NZ_CP011914.1_180837_181950_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|121aa|down_8|NZ_CP011914.1_182192_182555_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|98aa|down_9|NZ_CP011914.1_182594_182888_+	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain
GCF_001481725.1_ASM148172v1	NZ_CP011914	Eubacterium limosum strain SA11 chromosome, complete genome	2	414389-416064	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	Orphan	GTTGAAGTTTAACATGAGATGTATTTAAAT,GTTGAAGTTTAACATGAGATGTATTTAAAT,GTTGAAGTTTAACATGAGATGTATTTAAAT	30,30,30	0	0	NA	NA	II-B:II-B:II-B	24,25,25	25	Orphan	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	NA,NA	NA|283aa|up_9|NZ_CP011914.1_398762_399611_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|692aa|up_8|NZ_CP011914.1_399600_401676_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|889aa|up_7|NZ_CP011914.1_401925_404592_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|271aa|up_6|NZ_CP011914.1_404651_405464_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|500aa|up_5|NZ_CP011914.1_405599_407099_-	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion]	NA|444aa|up_4|NZ_CP011914.1_407121_408453_-	TIGR04385, radical_SAM_superfamily_protein, putative variant cofactor biosynthesis B12-binding domain/radical SAM domain protein 1	NA|519aa|up_3|NZ_CP011914.1_408459_410016_-	pfam10050, DUF2284, Predicted metal-binding protein (DUF2284)	NA|359aa|up_2|NZ_CP011914.1_410002_411079_-	pfam02277, DBI_PRT, Phosphoribosyltransferase	NA|428aa|up_1|NZ_CP011914.1_411196_412480_-	TIGR04386, thiamine_biosynthesis_protein_ThiC, ThiC-like protein 1	NA|428aa|up_0|NZ_CP011914.1_412493_413777_-	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|396aa|down_0|NZ_CP011914.1_416240_417428_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|405aa|down_1|NZ_CP011914.1_417573_418788_+	pfam06792, UPF0261, Uncharacterized protein family (UPF0261)	NA|277aa|down_2|NZ_CP011914.1_418813_419644_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|291aa|down_3|NZ_CP011914.1_421259_422132_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|194aa|down_4|NZ_CP011914.1_422138_422720_-	pfam02545, Maf, Maf-like protein	NA|418aa|down_5|NZ_CP011914.1_422856_424110_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_6|NZ_CP011914.1_424301_424640_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|707aa|down_7|NZ_CP011914.1_424745_426866_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|368aa|down_8|NZ_CP011914.1_427664_428768_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|502aa|down_9|NZ_CP011914.1_428771_430277_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]
GCF_001481725.1_ASM148172v1	NZ_CP011914	Eubacterium limosum strain SA11 chromosome, complete genome	3	432106-432185	3	CRISPRCasFinder	no		cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	Orphan	CAAAAATATTACGGTTTACGGCA	23	0	0	NA	NA	NA	1	1	Orphan	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	NA,NA	NA|277aa|up_9|NZ_CP011914.1_418813_419644_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|291aa|up_8|NZ_CP011914.1_421259_422132_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|194aa|up_7|NZ_CP011914.1_422138_422720_-	pfam02545, Maf, Maf-like protein	NA|418aa|up_6|NZ_CP011914.1_422856_424110_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|up_5|NZ_CP011914.1_424301_424640_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|707aa|up_4|NZ_CP011914.1_424745_426866_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|368aa|up_3|NZ_CP011914.1_427664_428768_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|502aa|up_2|NZ_CP011914.1_428771_430277_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|153aa|up_1|NZ_CP011914.1_430279_430738_+	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase	NA|413aa|up_0|NZ_CP011914.1_430730_431969_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|433aa|down_0|NZ_CP011914.1_432714_434013_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|190aa|down_1|NZ_CP011914.1_434054_434624_+	pfam03861, ANTAR, ANTAR domain	NA|200aa|down_2|NZ_CP011914.1_434708_435308_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|219aa|down_3|NZ_CP011914.1_435427_436084_+	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea	NA|435aa|down_4|NZ_CP011914.1_436247_437552_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|1395aa|down_5|NZ_CP011914.1_437591_441776_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|637aa|down_6|NZ_CP011914.1_442064_443975_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|227aa|down_7|NZ_CP011914.1_444062_444743_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|386aa|down_8|NZ_CP011914.1_444945_446103_+	cd03308, CmuA_CmuC_like, CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC	NA|456aa|down_9|NZ_CP011914.1_446307_447675_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
GCF_001481725.1_ASM148172v1	NZ_CP011914	Eubacterium limosum strain SA11 chromosome, complete genome	4	1889393-1889498	4	CRISPRCasFinder	no		cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	Orphan	TTGGAGAAGTATCGAAGAGGTCATAACGAGCC	32	0	0	NA	NA	NA	1	1	Orphan	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	NA,NA|83aa|down_5|NZ_CP011914.1_1892493_1892742_-,NA|286aa|down_7|NZ_CP011914.1_1893433_1894291_-	NA|583aa|up_9|NZ_CP011914.1_1877632_1879381_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|509aa|up_8|NZ_CP011914.1_1879409_1880936_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|476aa|up_7|NZ_CP011914.1_1880975_1882403_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|495aa|up_6|NZ_CP011914.1_1882444_1883929_+	cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|245aa|up_5|NZ_CP011914.1_1884043_1884778_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|250aa|up_4|NZ_CP011914.1_1884790_1885540_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|303aa|up_3|NZ_CP011914.1_1885539_1886448_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|232aa|up_2|NZ_CP011914.1_1886600_1887296_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|483aa|up_1|NZ_CP011914.1_1887308_1888757_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|133aa|up_0|NZ_CP011914.1_1888802_1889201_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|365aa|down_0|NZ_CP011914.1_1889686_1890781_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|148aa|down_1|NZ_CP011914.1_1890897_1891341_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|87aa|down_2|NZ_CP011914.1_1891507_1891768_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_3|NZ_CP011914.1_1891782_1892115_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|88aa|down_4|NZ_CP011914.1_1892056_1892320_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|83aa|down_5|NZ_CP011914.1_1892493_1892742_-	NA	NA|242aa|down_6|NZ_CP011914.1_1892711_1893437_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|286aa|down_7|NZ_CP011914.1_1893433_1894291_-	NA	NA|189aa|down_8|NZ_CP011914.1_1894302_1894869_-	pfam02805, Ada_Zn_binding, Metal binding domain of Ada	NA|200aa|down_9|NZ_CP011914.1_1894945_1895545_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001481725.1_ASM148172v1	NZ_CP011914	Eubacterium limosum strain SA11 chromosome, complete genome	5	3714573-3714671	5	CRISPRCasFinder	no	csa3	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	Type I-A	GGCGTCGTCCAGCTTCTGCTGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,c2c10_CAS-V-U3,WYL,csa3,DEDDh,csx1,DinG	NA|147aa|up_3|NZ_CP011914.1_3710394_3710835_+,NA|154aa|up_2|NZ_CP011914.1_3710994_3711456_-,NA	NA|446aa|up_9|NZ_CP011914.1_3703102_3704440_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|717aa|up_8|NZ_CP011914.1_3704615_3706766_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|297aa|up_7|NZ_CP011914.1_3706939_3707830_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|463aa|up_6|NZ_CP011914.1_3707919_3709308_-	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|251aa|up_5|NZ_CP011914.1_3709294_3710047_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|76aa|up_4|NZ_CP011914.1_3710180_3710408_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|147aa|up_3|NZ_CP011914.1_3710394_3710835_+	NA	NA|154aa|up_2|NZ_CP011914.1_3710994_3711456_-	NA	NA|151aa|up_1|NZ_CP011914.1_3711558_3712011_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|180aa|up_0|NZ_CP011914.1_3712233_3712773_-	pfam04229, GrpB, GrpB protein	NA|149aa|down_0|NZ_CP011914.1_3716310_3716757_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|496aa|down_1|NZ_CP011914.1_3717110_3718598_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|485aa|down_2|NZ_CP011914.1_3720174_3721629_-	pfam06253, MTTB, Trimethylamine methyltransferase (MTTB)	NA|551aa|down_3|NZ_CP011914.1_3724653_3726306_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|267aa|down_4|NZ_CP011914.1_3726345_3727146_-	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion]	NA|499aa|down_5|NZ_CP011914.1_3727507_3729004_-	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|225aa|down_6|NZ_CP011914.1_3729171_3729846_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|1617aa|down_7|NZ_CP011914.1_3729880_3734731_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|219aa|down_8|NZ_CP011914.1_3734910_3735567_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|265aa|down_9|NZ_CP011914.1_3735799_3736594_-	PRK07535, PRK07535, methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
