assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001466725.1_ASM146672v1	NZ_CP013650	Lacimicrobium alkaliphilum strain YelD216, complete genome	1	94118-94265	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	GTCGCTGGGTTCCCGTCAACAGCACGCGGGAACGACATACGGTCATGCCC	50	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|125aa|up_9|NZ_CP013650.1_82601_82976_-,NA|127aa|up_7|NZ_CP013650.1_83634_84015_-,NA	NA|125aa|up_9|NZ_CP013650.1_82601_82976_-	NA	NA|156aa|up_8|NZ_CP013650.1_83067_83535_-	pfam09970, DUF2204, Nucleotidyl transferase of unknown function (DUF2204)	NA|127aa|up_7|NZ_CP013650.1_83634_84015_-	NA	NA|322aa|up_6|NZ_CP013650.1_84255_85221_+	TIGR02249, Integrase/recombinase_E2_protein	NA|694aa|up_5|NZ_CP013650.1_85372_87454_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|411aa|up_4|NZ_CP013650.1_87762_88995_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|124aa|up_3|NZ_CP013650.1_89163_89535_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|234aa|up_2|NZ_CP013650.1_89663_90365_+	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|555aa|up_1|NZ_CP013650.1_90379_92044_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|508aa|up_0|NZ_CP013650.1_92043_93567_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|299aa|down_0|NZ_CP013650.1_95307_96204_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|99aa|down_1|NZ_CP013650.1_96360_96657_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|445aa|down_2|NZ_CP013650.1_97238_98573_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|175aa|down_3|NZ_CP013650.1_98615_99140_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|301aa|down_4|NZ_CP013650.1_99424_100327_+	PRK15453, PRK15453, phosphoribulokinase; Provisional	NA|137aa|down_5|NZ_CP013650.1_100902_101313_-	PRK10738, PRK10738, OsmC family protein	NA|243aa|down_6|NZ_CP013650.1_101542_102271_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|435aa|down_7|NZ_CP013650.1_102282_103587_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|485aa|down_8|NZ_CP013650.1_103653_105108_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|462aa|down_9|NZ_CP013650.1_105104_106490_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]
GCF_001466725.1_ASM146672v1	NZ_CP013650	Lacimicrobium alkaliphilum strain YelD216, complete genome	2	517685-517789	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAAAACGCTCCCGGCGTTTTTTTAC	25	1	2	517710-517764|517710-517764	NZ_CP013650.1_517553-517607|NZ_CP013650.1_517396-517450	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|64aa|up_6|NZ_CP013650.1_509966_510158_+,NA|455aa|up_0|NZ_CP013650.1_515872_517237_+,NA	NA|477aa|up_9|NZ_CP013650.1_506603_508034_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|270aa|up_8|NZ_CP013650.1_508057_508867_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|258aa|up_7|NZ_CP013650.1_508935_509709_-	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|64aa|up_6|NZ_CP013650.1_509966_510158_+	NA	NA|71aa|up_5|NZ_CP013650.1_510212_510425_-	pfam11127, DUF2892, Protein of unknown function (DUF2892)	NA|378aa|up_4|NZ_CP013650.1_510630_511764_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|209aa|up_3|NZ_CP013650.1_511860_512487_+	sd00010, SLR, Sel1-like repeat	NA|775aa|up_2|NZ_CP013650.1_512577_514902_+	PRK11642, PRK11642, ribonuclease R	NA|250aa|up_1|NZ_CP013650.1_514905_515655_+	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA|455aa|up_0|NZ_CP013650.1_515872_517237_+	NA	NA|123aa|down_0|NZ_CP013650.1_517907_518276_+	PRK05483, rplN, 50S ribosomal protein L14; Validated	NA|105aa|down_1|NZ_CP013650.1_518288_518603_+	PRK00004, rplX, 50S ribosomal protein L24; Reviewed	NA|180aa|down_2|NZ_CP013650.1_518618_519158_+	PRK00010, rplE, 50S ribosomal protein L5; Validated	NA|102aa|down_3|NZ_CP013650.1_519169_519475_+	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|131aa|down_4|NZ_CP013650.1_519488_519881_+	PRK00136, rpsH, 30S ribosomal protein S8; Validated	NA|178aa|down_5|NZ_CP013650.1_519895_520429_+	PRK05498, rplF, 50S ribosomal protein L6; Validated	NA|118aa|down_6|NZ_CP013650.1_520441_520795_+	PRK05593, rplR, 50S ribosomal protein L18; Reviewed	NA|167aa|down_7|NZ_CP013650.1_520804_521305_+	PRK00550, rpsE, 30S ribosomal protein S5; Validated	NA|61aa|down_8|NZ_CP013650.1_521311_521494_+	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|145aa|down_9|NZ_CP013650.1_521497_521932_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed
GCF_001466725.1_ASM146672v1	NZ_CP013650	Lacimicrobium alkaliphilum strain YelD216, complete genome	3	1091501-1091590	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AGTCCTTCCCGCGCAGGCGGGAATCCAGTG	30	0	0	NA	NA	I-E	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|397aa|up_2|NZ_CP013650.1_1085824_1087015_+,NA	NA|312aa|up_9|NZ_CP013650.1_1078312_1079248_+	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|348aa|up_8|NZ_CP013650.1_1079244_1080288_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|395aa|up_7|NZ_CP013650.1_1080284_1081469_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|362aa|up_6|NZ_CP013650.1_1081461_1082547_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|261aa|up_5|NZ_CP013650.1_1082587_1083370_+	TIGR03101, hydr2_PEP, exosortase A system-associated hydrolase 2	NA|277aa|up_4|NZ_CP013650.1_1083369_1084200_+	TIGR03100, hydr1_PEP, exosortase A system-associated hydrolase 1	NA|521aa|up_3|NZ_CP013650.1_1084252_1085815_+	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|397aa|up_2|NZ_CP013650.1_1085824_1087015_+	NA	NA|623aa|up_1|NZ_CP013650.1_1087060_1088929_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|649aa|up_0|NZ_CP013650.1_1089251_1091198_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|366aa|down_0|NZ_CP013650.1_1091734_1092833_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|514aa|down_1|NZ_CP013650.1_1092864_1094406_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|251aa|down_2|NZ_CP013650.1_1095493_1096246_+	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|162aa|down_3|NZ_CP013650.1_1096319_1096805_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|330aa|down_4|NZ_CP013650.1_1097335_1098325_-	PRK09559, PRK09559, putative global regulator; Reviewed	NA|84aa|down_5|NZ_CP013650.1_1098470_1098722_+	COG2938, COG2938, Uncharacterized conserved protein [Function unknown]	NA|300aa|down_6|NZ_CP013650.1_1099097_1099997_+	cd03453, SAV4209_like, SAV4209_like	NA|531aa|down_7|NZ_CP013650.1_1100014_1101607_-	PRK09077, PRK09077, L-aspartate oxidase; Provisional	NA|193aa|down_8|NZ_CP013650.1_1101849_1102428_+	PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional	NA|196aa|down_9|NZ_CP013650.1_1102476_1103064_+	PRK10863, PRK10863, anti-sigma-E factor RseA
GCF_001466725.1_ASM146672v1	NZ_CP013650	Lacimicrobium alkaliphilum strain YelD216, complete genome	4	1672637-1672745	4	CRISPRCasFinder	no	DinG	csa3,WYL,cas3,DEDDh,DinG	Type IV-A	GCAGTTGACTTTTAACGTCCACTACTCCCTGA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|88aa|up_5|NZ_CP013650.1_1667195_1667459_-,NA|281aa|up_0|NZ_CP013650.1_1670592_1671435_-,NA|106aa|down_6|NZ_CP013650.1_1682585_1682903_+	NA|529aa|up_9|NZ_CP013650.1_1661897_1663484_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|126aa|up_8|NZ_CP013650.1_1663615_1663993_+	pfam04247, SirB, Invasion gene expression up-regulator, SirB	NA|272aa|up_7|NZ_CP013650.1_1664071_1664887_+	COG2912, COG2912, Uncharacterized conserved protein [Function unknown]	NA|416aa|up_6|NZ_CP013650.1_1664931_1666179_+	pfam05684, DUF819, Protein of unknown function (DUF819)	NA|88aa|up_5|NZ_CP013650.1_1667195_1667459_-	NA	NA|304aa|up_4|NZ_CP013650.1_1667651_1668563_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|205aa|up_3|NZ_CP013650.1_1668546_1669161_+	COG3571, COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|124aa|up_2|NZ_CP013650.1_1669157_1669529_+	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|383aa|up_1|NZ_CP013650.1_1669438_1670587_+	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|281aa|up_0|NZ_CP013650.1_1670592_1671435_-	NA	NA|246aa|down_0|NZ_CP013650.1_1672944_1673682_-	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	NA|353aa|down_1|NZ_CP013650.1_1673875_1674934_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|443aa|down_2|NZ_CP013650.1_1675099_1676428_+	cd05642, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily	NA|624aa|down_3|NZ_CP013650.1_1676494_1678366_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	DinG|629aa|down_4|NZ_CP013650.1_1679906_1681793_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|234aa|down_5|NZ_CP013650.1_1681789_1682491_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|106aa|down_6|NZ_CP013650.1_1682585_1682903_+	NA	NA|235aa|down_7|NZ_CP013650.1_1683058_1683763_+	pfam03843, Slp, Outer membrane lipoprotein Slp family	NA|284aa|down_8|NZ_CP013650.1_1683901_1684753_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|552aa|down_9|NZ_CP013650.1_1684880_1686536_+	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD
GCF_001466725.1_ASM146672v1	NZ_CP013650	Lacimicrobium alkaliphilum strain YelD216, complete genome	5	1721371-1721470	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAGCTGTCCTAAAACTCTCCCGGA	24	1	1	1721395-1721446	NZ_CP013650.1_1720727-1720778	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|47aa|up_9|NZ_CP013650.1_1709803_1709944_-,NA|452aa|down_1|NZ_CP013650.1_1724211_1725567_+	NA|47aa|up_9|NZ_CP013650.1_1709803_1709944_-	NA	NA|305aa|up_8|NZ_CP013650.1_1710041_1710956_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|210aa|up_7|NZ_CP013650.1_1711282_1711912_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|390aa|up_6|NZ_CP013650.1_1711836_1713006_+	pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp	NA|262aa|up_5|NZ_CP013650.1_1713045_1713831_+	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|239aa|up_4|NZ_CP013650.1_1713837_1714554_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|267aa|up_3|NZ_CP013650.1_1714676_1715477_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|377aa|up_2|NZ_CP013650.1_1715766_1716897_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_1|NZ_CP013650.1_1716908_1720130_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|159aa|up_0|NZ_CP013650.1_1720129_1720606_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|822aa|down_0|NZ_CP013650.1_1721676_1724142_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|452aa|down_1|NZ_CP013650.1_1724211_1725567_+	NA	NA|401aa|down_2|NZ_CP013650.1_1725755_1726958_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|632aa|down_3|NZ_CP013650.1_1727105_1729001_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|333aa|down_4|NZ_CP013650.1_1729012_1730011_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|70aa|down_5|NZ_CP013650.1_1730274_1730484_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|226aa|down_6|NZ_CP013650.1_1731128_1731806_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|452aa|down_7|NZ_CP013650.1_1731799_1733155_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|130aa|down_8|NZ_CP013650.1_1733170_1733560_-	COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription]	NA|70aa|down_9|NZ_CP013650.1_1733584_1733794_-	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor
