The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	756152	763972	2777077		Hokovirus(16.67%)	10	NA	NA
WP_031796834.1|756152_757208_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|757207_757894_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|757868_758342_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|758682_759123_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|759403_759988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|760086_760800_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|760803_761223_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|761224_761893_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|762243_762837_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|762820_763972_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	775942	790258	2777077		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|775942_777001_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|777159_777702_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|778438_779356_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|779446_779554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|779625_781131_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|781470_781971_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_031796835.1|781990_782857_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|783658_784057_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|784019_786125_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|786244_787216_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|787585_788557_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|788543_789500_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|789496_790258_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 3
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	929835	953060	2777077	integrase	Streptococcus_phage(94.74%)	23	918292:918309	957335:957352
918292:918309	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|929835_933489_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|933654_934557_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|934883_935273_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|935537_936755_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|936836_937040_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|937500_937731_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|937727_938150_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|938654_939008_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|939067_939235_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|939353_941273_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|941288_941405_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|941649_942582_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|942578_943580_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|943576_945754_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|945756_948204_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|948187_948694_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_031911857.1|948668_949166_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	99.4	6.4e-91
WP_001009056.1|949282_949504_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|949546_950752_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|950774_950927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|950929_952315_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|952343_952730_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|952745_953060_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
957335:957352	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 4
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	959829	1018795	2777077	tRNA,transposase,protease,holin,bacteriocin	Planktothrix_phage(20.0%)	53	NA	NA
WP_000121214.1|959829_960777_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.9e-184
WP_000353948.1|960934_963544_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001047061.1|963602_964472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000700886.1|964602_965118_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000769695.1|965428_965863_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000682089.1|966119_966305_-	YjzD family protein	NA	NA	NA	NA	NA
WP_001100526.1|966599_967541_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000081234.1|967552_968797_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000915159.1|968851_969223_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521531.1|969465_970392_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000829637.1|970391_971462_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|971477_972560_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786744.1|972549_973491_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_001807927.1|975333_976269_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_031837532.1|976258_977278_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_162829041.1|977293_978373_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.4	5.4e-18
WP_001064121.1|978362_979289_+	ABC transporter ATP-binding protein	NA	M1I1A6	Acanthocystis_turfacea_Chlorella_virus	23.9	3.5e-05
WP_000406183.1|979316_980939_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000448934.1|981058_982048_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|982342_982738_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|983108_983828_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|983948_984935_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|984982_986791_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_031796815.1|987250_988057_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|988079_988445_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|988548_989142_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|989327_989675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|989691_990327_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|990343_991153_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|991149_992004_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|992024_993410_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|993419_995264_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|995541_996312_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|996508_997594_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|997935_999504_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|999645_1000404_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1000597_1001107_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154224.1|1001219_1002410_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1002387_1003563_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|1003993_1005478_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1005458_1005719_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|1005718_1007281_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1007582_1008386_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1008604_1010929_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1010945_1012304_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|1012442_1013954_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1014442_1015012_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1015221_1015440_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1015520_1016507_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1016705_1016882_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1016896_1017499_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1017798_1017876_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1018510_1018795_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1052855	1061328	2777077		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1052855_1053338_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1053324_1054449_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1054452_1055157_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1055156_1055420_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1055421_1056093_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|1056085_1058275_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_031796816.1|1058253_1059738_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	7.2e-45
WP_000030815.1|1059730_1060759_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1060761_1061328_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 6
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1318751	1323944	2777077		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001807853.1|1318751_1318949_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1319635_1319863_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1320168_1320375_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1321075_1321186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1321578_1321764_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|1322274_1322691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1323122_1323707_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1323770_1323944_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 7
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1494885	1581652	2777077	tRNA,plate,tail,integrase,protease,capsid,holin,terminase,portal,head	Staphylococcus_phage(76.47%)	112	1529822:1529839	1578885:1578902
WP_000858789.1|1494885_1496178_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525056.1|1496499_1499193_-	ATP-dependent DNA helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.3	1.4e-46
WP_000049916.1|1499216_1500188_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361538.1|1500174_1501377_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	7.1e-35
WP_060578197.1|1501381_1502524_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1502767_1503085_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_031774809.1|1503419_1504100_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154694.1|1504171_1504759_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005220.1|1504748_1505324_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	1.6e-08
WP_031838331.1|1505337_1506582_-	menaquinone-cytochrome C reductase	NA	NA	NA	NA	NA
WP_000245908.1|1506588_1507887_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776339.1|1507896_1508961_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269939.1|1508986_1510153_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1510539_1510740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1510945_1511395_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096479.1|1511486_1512446_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774681.1|1512447_1513173_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1513175_1513748_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1514178_1514451_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161737.1|1514621_1515620_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1515636_1516947_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1517168_1518344_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001825307.1|1518600_1518792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001807839.1|1518908_1519025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644390.1|1519055_1519715_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681742.1|1519791_1520760_+	asparaginase	NA	NA	NA	NA	NA
WP_001174257.1|1520874_1521861_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001807838.1|1522021_1522138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069278.1|1522263_1523718_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902104.1|1523870_1525250_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
WP_001163801.1|1525239_1526193_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1526300_1526549_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186909.1|1526654_1527200_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001825312.1|1527603_1528536_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001807840.1|1528990_1529887_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
1529822:1529839	attL	TTCCATCGTGGAACATCC	NA	NA	NA	NA
WP_001825313.1|1529941_1530871_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_170267452.1|1530961_1531177_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.5e-25
WP_000675478.1|1531554_1532391_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_031912154.1|1533006_1534461_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8SDN4	Staphylococcus_virus	99.6	1.7e-288
WP_000339144.1|1534471_1534774_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|1534909_1535209_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1535254_1535419_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1535411_1535801_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031775142.1|1535800_1537267_-|plate	BppU family phage baseplate upper protein	plate	A7TWK6	Staphylococcus_phage	99.0	1.8e-253
WP_000429551.1|1537266_1539177_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|1539192_1539483_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_016187454.1|1539482_1541066_-|tail	phage tail protein	tail	M9QX27	Staphylococcus_phage	100.0	7.1e-309
WP_001190533.1|1541074_1541899_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_060578199.1|1541898_1548099_-|tail	phage tail tape measure protein	tail	A0A2D1G5S0	Staphylococcus_phage	99.4	0.0e+00
WP_000438833.1|1548112_1548271_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589165.1|1548312_1548663_-	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|1548720_1549176_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1549267_1549909_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023808.1|1549943_1550339_-	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
WP_000110019.1|1550339_1550741_-	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	100.0	8.1e-68
WP_000395499.1|1550737_1551070_-	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
WP_000050973.1|1551081_1551360_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_031776039.1|1551428_1552592_-|capsid	phage major capsid protein	capsid	A0A0K1LKB5	Staphylococcus_phage	100.0	2.7e-217
WP_031775146.1|1552603_1553377_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.8	7.8e-136
WP_001100669.1|1553360_1554599_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_015974521.1|1554603_1556295_-|terminase	terminase large subunit	terminase	Q9B0E3	Staphylococcus_virus	100.0	0.0e+00
WP_000778933.1|1556284_1556590_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_031775147.1|1556717_1557032_-	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	98.1	2.1e-55
WP_015986202.1|1557188_1557626_-	hypothetical protein	NA	A7TWI7	Staphylococcus_phage	100.0	6.1e-77
WP_031838374.1|1558246_1558447_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	8.4e-26
WP_031838395.1|1558514_1558667_-	transcriptional regulator	NA	Q9B0E9	Staphylococcus_virus	98.0	7.6e-19
WP_001555739.1|1558666_1559053_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	100.0	3.0e-64
WP_031766068.1|1559042_1559279_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	98.7	7.4e-37
WP_000195831.1|1559303_1559540_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_031838396.1|1559576_1560119_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	99.4	5.5e-96
WP_001065023.1|1560123_1560360_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|1560352_1560661_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|1560657_1561005_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031796932.1|1561001_1561403_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	99.2	4.6e-71
WP_000693987.1|1561405_1561612_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_031796934.1|1561625_1561874_-	phage protein	NA	A0A2I6PDI0	Staphylococcus_phage	98.8	3.6e-42
WP_031838377.1|1561874_1562234_-	phage protein	NA	B2ZYW3	Staphylococcus_phage	99.2	2.2e-61
WP_031838378.1|1562234_1562420_-	DUF3113 family protein	NA	A0A0E3TAK3	Staphylococcus_phage	93.4	5.6e-24
WP_000049798.1|1562424_1562829_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123688.1|1562839_1563061_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001024405.1|1563064_1563280_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001106166.1|1563276_1564518_-	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	100.0	2.6e-229
WP_001132243.1|1564514_1564871_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|1564870_1565626_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_031838379.1|1565618_1566290_-	phi PV83 orf 19-like protein	NA	Q4ZBU9	Staphylococcus_virus	99.6	4.4e-127
WP_000704713.1|1566302_1566857_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_000137071.1|1566886_1567666_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	100.0	2.5e-142
WP_000999048.1|1567666_1568203_-	host-nuclease inhibitor Gam family protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_000291481.1|1568215_1568476_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_031838380.1|1568480_1568783_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	97.0	4.5e-47
WP_031838381.1|1568847_1569162_-	hypothetical protein	NA	I1W620	Staphylococcus_phage	99.0	4.8e-52
WP_031838382.1|1569166_1569337_-	DUF1270 domain-containing protein	NA	E9LT78	Staphylococcus_phage	98.2	7.4e-23
WP_001124160.1|1569349_1569613_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1569637_1569853_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_016170627.1|1569907_1570273_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	1.2e-62
WP_001025401.1|1570241_1570487_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1570542_1570752_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1570741_1570885_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000362644.1|1570955_1571168_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_000771849.1|1571208_1571358_-	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000435362.1|1571372_1571816_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	99.3	3.4e-75
WP_000272859.1|1571828_1572077_-	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_001260487.1|1572240_1572564_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000525004.1|1572576_1573038_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825948.1|1573055_1573640_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001795334.1|1573869_1574016_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191464.1|1574012_1574627_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_031585161.1|1574752_1575958_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	3.8e-222
WP_060578201.1|1576000_1578028_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	94.8	1.8e-110
WP_001825329.1|1578020_1578950_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
1578885:1578902	attR	TTCCATCGTGGAACATCC	NA	NA	NA	NA
WP_000987760.1|1579194_1580946_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_000064078.1|1580926_1581652_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 8
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1636773	1645085	2777077	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1636773_1637559_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1637684_1638575_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062171.1|1638584_1639931_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683941.1|1640044_1641145_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1641147_1641825_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1641955_1643062_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1643285_1645085_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1714509	1723552	2777077	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1714509_1715028_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1715049_1717323_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1717525_1719805_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1720079_1720340_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1720358_1721498_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1721520_1722546_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1722547_1723552_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP013616	Staphylococcus aureus strain RIVM1295 chromosome, complete genome	2777077	1847287	1895131	2777077	tRNA,protease,transposase	Staphylococcus_phage(91.67%)	46	NA	NA
WP_001050515.1|1847287_1853836_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|1854159_1854471_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|1854492_1856910_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_031796795.1|1857197_1858379_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	6.2e-217
WP_000526541.1|1858488_1859442_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1859438_1860002_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1860120_1860522_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1861094_1861922_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1861924_1862044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1862155_1863157_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1863284_1863743_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1863755_1864937_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_031796796.1|1864947_1865580_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_000077346.1|1865586_1866630_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_000221190.1|1869253_1869568_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1869567_1870860_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1870946_1871801_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1872076_1872301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1872499_1872970_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|1873082_1873526_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030475.1|1873512_1873956_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	6.4e-50
WP_001168915.1|1874253_1874889_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1875055_1875676_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1876238_1876952_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1877210_1877513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1877767_1878133_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1878129_1878483_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1878732_1879566_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1879777_1880686_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1880810_1882004_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1882375_1883968_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1884264_1885011_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1885015_1885489_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1885554_1885812_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1885808_1886810_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1886814_1888293_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1888451_1888907_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1889209_1889872_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1889952_1890948_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1891023_1891650_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1891690_1892035_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1892132_1892705_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1892902_1893460_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1893830_1894007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1894017_1894401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1894849_1895131_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
