The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN868943	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 chromosome 1	3746274	1058727	1067898	3746274	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_000569166.1|1058727_1059675_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|1059658_1060390_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1060370_1060478_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1060537_1061269_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1061491_1063177_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1063173_1063893_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1063939_1064407_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000703137.1|1065165_1065624_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195334.1|1065864_1067898_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_LN868943	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 chromosome 1	3746274	1148848	1155145	3746274		Enterobacteria_phage(50.0%)	6	NA	NA
WP_001111842.1|1148848_1150252_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
WP_000981469.1|1150429_1151323_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1151699_1152785_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023659.1|1152784_1153684_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_023165990.1|1153731_1154610_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	3.0e-107
WP_001100812.1|1154614_1155145_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	56.5	1.4e-51
>prophage 3
NZ_LN868943	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 chromosome 1	3746274	3677907	3724803	3746274	plate,tRNA,tail	Burkholderia_phage(34.78%)	49	NA	NA
WP_001182227.1|3677907_3678906_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039327.1|3678993_3680304_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416271.1|3680550_3681066_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|3681165_3681375_-	CsbD family protein	NA	NA	NA	NA	NA
WP_001575282.1|3681396_3681510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128113.1|3681506_3682832_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|3683010_3683619_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|3683727_3684096_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|3684266_3686687_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|3686785_3687658_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019229.1|3687671_3688169_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782504.1|3688349_3689267_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973643.1|3689430_3690789_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|3690877_3691987_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695415.1|3692348_3693539_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382576.1|3693670_3695215_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252081.1|3695229_3696120_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|3696285_3696696_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750791.1|3696838_3698935_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977975.1|3698934_3699672_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_122821798.1|3699668_3700337_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|3700370_3700613_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790024.1|3701056_3702706_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136392.1|3703094_3704444_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|3704574_3704922_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226439.1|3705498_3705786_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_001270444.1|3705788_3706394_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	1.0e-61
WP_000777266.1|3706406_3706721_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449435.1|3706880_3707336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|3707332_3707530_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729848.1|3707519_3708947_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
WP_000907495.1|3708946_3709471_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003638.1|3709522_3709840_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|3709799_3709928_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262487.1|3710024_3712391_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	2.7e-70
WP_000271430.1|3712390_3713344_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	51.5	7.9e-37
WP_001269716.1|3713343_3713553_+|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818143.1|3713540_3714584_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	2.9e-77
WP_000679389.1|3714593_3715316_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593184.1|3715643_3716006_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000703634.1|3716002_3716932_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
WP_023165900.1|3716931_3718479_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093494.1|3718642_3719002_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	63.3	3.1e-34
WP_000951738.1|3718992_3720108_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	51.7	1.5e-100
WP_000359504.1|3720100_3720733_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000368191.1|3720735_3722181_+|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	38.1	5.0e-75
WP_000493810.1|3722183_3722885_+	DUF4376 domain-containing protein	NA	K7PMH7	Enterobacteria_phage	45.9	7.6e-29
WP_000084333.1|3722881_3723337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587743.1|3724074_3724803_+	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
>prophage 1
NZ_LN868944	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 2, complete sequence	727905	88702	96125	727905		Mycobacterium_phage(33.33%)	7	NA	NA
WP_001138475.1|88702_90037_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.4	1.1e-17
WP_000209811.1|90125_90557_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_000028870.1|90828_91074_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	40.3	1.0e-09
WP_001275401.1|91070_91481_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	3.3e-16
WP_000246619.1|91453_93598_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	48.6	2.9e-196
WP_000777901.1|93608_94568_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	1.8e-129
WP_000985529.1|94922_96125_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	38.8	1.4e-27
>prophage 2
NZ_LN868944	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 2, complete sequence	727905	520446	535472	727905	portal,capsid,head,tRNA,protease,terminase,tail,transposase	uncultured_Caudovirales_phage(66.67%)	16	NA	NA
WP_001264391.1|520446_521460_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
WP_001144069.1|521687_521903_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_000918865.1|522138_523884_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
WP_001519776.1|524033_525881_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_000237776.1|526004_526511_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_153260180.1|527130_527301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095055964.1|527463_528575_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.6	1.8e-45
WP_053521170.1|528617_529190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000219413.1|529277_530939_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	94.2	1.5e-311
WP_001137908.1|530922_531279_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	93.2	3.3e-57
WP_023165946.1|531419_531863_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	63.9	1.2e-51
WP_000818875.1|531863_532154_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	57.7	1.8e-29
WP_001201223.1|532146_532485_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	46.8	6.6e-23
WP_000269850.1|532481_533711_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	86.2	2.8e-212
WP_000381911.1|533712_534273_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	84.7	2.2e-87
WP_000734563.1|534317_535472_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	67.5	7.8e-148
