assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	1	821409-821490	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	ACCCCAACTTCCATTGCCTGTAGAA	25	1	16	821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465|821434-821465	NZ_LN831036.1_367696-367665|NZ_LN831036.1_1050524-1050555|NZ_LN831036.1_170272-170241|NZ_LN831036.1_289297-289266|NZ_LN831036.1_367751-367720|NZ_LN831036.1_767322-767353|NZ_LN831036.1_808916-808947|NZ_LN831036.1_814352-814383|NZ_LN831036.1_1024083-1024114|NZ_LN831036.1_1024199-1024230|NZ_LN831036.1_1330130-1330099|NZ_LN831036.1_1419205-1419236|NZ_LN831036.1_1644058-1644089|NZ_LN831036.1_1678084-1678115|NZ_LN831036.1_2322542-2322573|NZ_LN831036.1_2509927-2509896	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA|153aa|down_6|NZ_LN831036.1_829499_829958_+	NA|280aa|up_9|NZ_LN831036.1_810129_810969_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_LN831036.1_810976_811462_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_LN831036.1_811469_812909_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_LN831036.1_812975_813911_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_LN831036.1_814618_815530_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_LN831036.1_815526_816522_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_LN831036.1_816632_817577_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_LN831036.1_818140_818728_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_LN831036.1_818970_819873_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_LN831036.1_820575_821205_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_LN831036.1_821906_822920_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_LN831036.1_822972_823983_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_LN831036.1_824121_825312_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_LN831036.1_825433_826195_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_LN831036.1_826197_827715_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_LN831036.1_827844_829149_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_LN831036.1_829499_829958_+	NA	NA|78aa|down_7|NZ_LN831036.1_830024_830258_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_LN831036.1_830373_831114_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_LN831036.1_831147_833520_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	2	840488-841449	1	CRT	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	GANAGCGATTCAGANTCAGANAGTGANTCNGANNNNNN	38	3	25	841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841222-841243|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841330-841351|841384-841417	NZ_LN831036.1_599104-599125|NZ_LN831036.1_599284-599305|NZ_LN831036.1_599338-599359|NZ_LN831036.1_603808-603829|NZ_LN831036.1_2700819-2700798|NZ_LN831036.1_2700945-2700924|NZ_LN831036.1_2701071-2701050|NZ_LN831036.1_598942-598963|NZ_LN831036.1_603364-603385|NZ_LN831036.1_603382-603403|NZ_LN831036.1_607394-607415|NZ_LN831036.1_607676-607697|NZ_LN831036.1_2701269-2701248|NZ_LN831036.1_599254-599275|NZ_LN831036.1_603724-603745|NZ_LN831036.1_603850-603871|NZ_LN831036.1_607526-607547|NZ_LN831036.1_607646-607667|NZ_LN831036.1_2700849-2700828|NZ_LN831036.1_603670-603691|NZ_LN831036.1_603778-603799|NZ_LN831036.1_603868-603889|NZ_LN831036.1_607346-607367|NZ_LN831036.1_607472-607493|NZ_LN831036.1_607364-607397	NA	12	12	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|153aa|up_9|NZ_LN831036.1_829499_829958_+,NA|108aa|up_4|NZ_LN831036.1_835327_835651_-,NA|52aa|up_2|NZ_LN831036.1_837167_837323_+,NA|174aa|up_1|NZ_LN831036.1_837330_837852_+,NA|341aa|down_1|NZ_LN831036.1_843805_844828_+,NA|157aa|down_2|NZ_LN831036.1_845162_845633_+,NA|73aa|down_5|NZ_LN831036.1_847711_847930_-,NA|95aa|down_6|NZ_LN831036.1_847991_848276_-,NA|63aa|down_8|NZ_LN831036.1_849120_849309_-,NA|87aa|down_9|NZ_LN831036.1_849337_849598_-	NA|153aa|up_9|NZ_LN831036.1_829499_829958_+	NA	NA|78aa|up_8|NZ_LN831036.1_830024_830258_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|up_7|NZ_LN831036.1_830373_831114_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|up_6|NZ_LN831036.1_831147_833520_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|155aa|up_5|NZ_LN831036.1_833541_834006_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|108aa|up_4|NZ_LN831036.1_835327_835651_-	NA	NA|243aa|up_3|NZ_LN831036.1_836004_836733_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|52aa|up_2|NZ_LN831036.1_837167_837323_+	NA	NA|174aa|up_1|NZ_LN831036.1_837330_837852_+	NA	NA|177aa|up_0|NZ_LN831036.1_837990_838521_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|513aa|down_0|NZ_LN831036.1_841916_843455_+	pfam08764, Coagulase, Staphylococcus aureus coagulase	NA|341aa|down_1|NZ_LN831036.1_843805_844828_+	NA	NA|157aa|down_2|NZ_LN831036.1_845162_845633_+	NA	NA|229aa|down_3|NZ_LN831036.1_845973_846660_+	pfam00565, SNase, Staphylococcal nuclease homolog	NA|67aa|down_4|NZ_LN831036.1_847016_847217_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|73aa|down_5|NZ_LN831036.1_847711_847930_-	NA	NA|95aa|down_6|NZ_LN831036.1_847991_848276_-	NA	NA|190aa|down_7|NZ_LN831036.1_848363_848933_-	COG3863, COG3863, Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]	NA|63aa|down_8|NZ_LN831036.1_849120_849309_-	NA	NA|87aa|down_9|NZ_LN831036.1_849337_849598_-	NA
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	3	1208993-1209077	2	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA	NA|78aa|up_9|NZ_LN831036.1_1198349_1198583_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|NZ_LN831036.1_1198698_1199430_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|NZ_LN831036.1_1199576_1203143_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|NZ_LN831036.1_1203142_1204393_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|NZ_LN831036.1_1204379_1204712_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|NZ_LN831036.1_1204737_1206105_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|NZ_LN831036.1_1206539_1206815_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NZ_LN831036.1_1207002_1207506_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|NZ_LN831036.1_1207505_1208243_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|NZ_LN831036.1_1208345_1208696_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|NZ_LN831036.1_1209150_1211757_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|NZ_LN831036.1_1212157_1213042_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|NZ_LN831036.1_1213025_1213793_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|NZ_LN831036.1_1213901_1215068_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|NZ_LN831036.1_1215089_1215998_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|373aa|down_5|NZ_LN831036.1_1216224_1217343_+	pfam01476, LysM, LysM domain	NA|415aa|down_6|NZ_LN831036.1_1217370_1218615_+	pfam02388, FemAB, FemAB family	NA|291aa|down_7|NZ_LN831036.1_1218787_1219660_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_8|NZ_LN831036.1_1219833_1221909_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_9|NZ_LN831036.1_1222064_1223372_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	4	1677983-1678068	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	1	8	1678010-1678041|1678010-1678041|1678010-1678041|1678010-1678041|1678010-1678041|1678010-1678041|1678010-1678041|1678010-1678041	NZ_LN831036.1_273849-273880|NZ_LN831036.1_274063-274094|NZ_LN831036.1_367598-367567|NZ_LN831036.1_1024009-1024040|NZ_LN831036.1_1024125-1024156|NZ_LN831036.1_1125085-1125054|NZ_LN831036.1_1209015-1208984|NZ_LN831036.1_2591464-2591495	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA,NA|49aa|down_3|NZ_LN831036.1_1682072_1682219_-,NA|43aa|down_8|NZ_LN831036.1_1685255_1685384_-	NA|208aa|up_9|NZ_LN831036.1_1666720_1667344_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_LN831036.1_1667343_1668612_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_LN831036.1_1668623_1669547_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_LN831036.1_1669549_1670188_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_LN831036.1_1670472_1670781_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_LN831036.1_1670795_1671224_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_LN831036.1_1671227_1671488_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_LN831036.1_1671550_1674181_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_LN831036.1_1674523_1677001_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_LN831036.1_1677002_1677671_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_LN831036.1_1678249_1679368_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_LN831036.1_1679368_1680511_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_LN831036.1_1680822_1681836_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_LN831036.1_1682072_1682219_-	NA	NA|61aa|down_4|NZ_LN831036.1_1682258_1682441_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_LN831036.1_1682540_1682963_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_LN831036.1_1683047_1684322_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_LN831036.1_1684482_1685256_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_LN831036.1_1685255_1685384_-	NA	NA|589aa|down_9|NZ_LN831036.1_1685716_1687483_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	5	1966894-1966978	4	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3,RT	Unclear	TGTTGGGGCCCACACCCCAACTTGCA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|92aa|up_6|NZ_LN831036.1_1961036_1961312_+,NA|129aa|up_1|NZ_LN831036.1_1965293_1965680_-,NA|138aa|down_1|NZ_LN831036.1_1968720_1969134_-,NA|31aa|down_5|NZ_LN831036.1_1972279_1972372_-	NA|419aa|up_9|NZ_LN831036.1_1958959_1960216_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_LN831036.1_1960218_1960419_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_LN831036.1_1960565_1961030_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_LN831036.1_1961036_1961312_+	NA	NA|406aa|up_5|NZ_LN831036.1_1961589_1962807_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_LN831036.1_1962918_1963548_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_LN831036.1_1963537_1964581_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_LN831036.1_1964577_1965279_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_LN831036.1_1965293_1965680_-	NA	NA|253aa|up_0|NZ_LN831036.1_1965896_1966655_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_LN831036.1_1967244_1968231_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_LN831036.1_1968720_1969134_-	NA	NA|244aa|down_2|NZ_LN831036.1_1969359_1970091_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|NZ_LN831036.1_1970092_1971406_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|NZ_LN831036.1_1971697_1972198_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_5|NZ_LN831036.1_1972279_1972372_-	NA	DEDDh|185aa|down_6|NZ_LN831036.1_1972586_1973141_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_7|NZ_LN831036.1_1973207_1974278_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_8|NZ_LN831036.1_1974524_1975055_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_9|NZ_LN831036.1_1975224_1976586_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	6	2212320-2212406	5	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3,RT	Type I-A	GCCAACTGATGTTTGCGTATCATTAGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|364aa|up_9|NZ_LN831036.1_2198823_2199915_+,NA|35aa|up_8|NZ_LN831036.1_2200414_2200519_-,NA|53aa|up_7|NZ_LN831036.1_2201198_2201357_+,NA	NA|364aa|up_9|NZ_LN831036.1_2198823_2199915_+	NA	NA|35aa|up_8|NZ_LN831036.1_2200414_2200519_-	NA	NA|53aa|up_7|NZ_LN831036.1_2201198_2201357_+	NA	NA|286aa|up_6|NZ_LN831036.1_2202014_2202872_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_LN831036.1_2202939_2203722_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_LN831036.1_2203953_2205759_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_LN831036.1_2206439_2207978_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_LN831036.1_2208012_2210145_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_LN831036.1_2210156_2210591_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_LN831036.1_2210590_2211697_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_LN831036.1_2219802_2221158_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_LN831036.1_2221184_2222117_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_LN831036.1_2222118_2222928_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_LN831036.1_2223116_2224025_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_LN831036.1_2230219_2231284_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_LN831036.1_2231431_2232874_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_LN831036.1_2233196_2233670_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_LN831036.1_2233768_2235112_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_LN831036.1_2235288_2235972_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_LN831036.1_2235990_2237178_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	7	2436151-2436244	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	GCGCATGCATAAAAGCCCCTAACAACCAGAGGT	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|39aa|up_9|NZ_LN831036.1_2425282_2425399_-,NA	NA|39aa|up_9|NZ_LN831036.1_2425282_2425399_-	NA	NA|144aa|up_8|NZ_LN831036.1_2425503_2425935_-	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|426aa|up_7|NZ_LN831036.1_2426141_2427419_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|208aa|up_6|NZ_LN831036.1_2427579_2428203_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|315aa|up_5|NZ_LN831036.1_2428248_2429193_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|481aa|up_4|NZ_LN831036.1_2429278_2430721_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|128aa|up_3|NZ_LN831036.1_2430903_2431287_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|702aa|up_2|NZ_LN831036.1_2432774_2434880_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|141aa|up_1|NZ_LN831036.1_2434950_2435373_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|119aa|up_0|NZ_LN831036.1_2435637_2435994_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|426aa|down_0|NZ_LN831036.1_2436276_2437554_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NZ_LN831036.1_2437735_2438101_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|149aa|down_2|NZ_LN831036.1_2438498_2438945_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|143aa|down_3|NZ_LN831036.1_2439160_2439589_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|390aa|down_4|NZ_LN831036.1_2439695_2440865_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|218aa|down_5|NZ_LN831036.1_2441292_2441946_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|345aa|down_6|NZ_LN831036.1_2441968_2443003_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_7|NZ_LN831036.1_2443026_2443479_-	pfam01590, GAF, GAF domain	NA|226aa|down_8|NZ_LN831036.1_2443498_2444176_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|down_9|NZ_LN831036.1_2444168_2444744_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]
GCF_001457495.1_NCTC13435	NZ_LN831036	Staphylococcus aureus strain NCTC13435 chromosome 1	8	2469164-2469261	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3,RT	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3,RT	NA|35aa|up_2|NZ_LN831036.1_2466886_2466991_+,NA|35aa|down_0|NZ_LN831036.1_2469454_2469559_-	NA|200aa|up_9|NZ_LN831036.1_2460362_2460962_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_LN831036.1_2460980_2461343_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_LN831036.1_2461597_2462848_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_LN831036.1_2462944_2463676_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_LN831036.1_2463672_2464392_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_LN831036.1_2464372_2465152_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_LN831036.1_2465272_2466712_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_LN831036.1_2466886_2466991_+	NA	NA|229aa|up_1|NZ_LN831036.1_2467144_2467831_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_LN831036.1_2468157_2469024_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_LN831036.1_2469454_2469559_-	NA	NA|437aa|down_1|NZ_LN831036.1_2469653_2470964_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_LN831036.1_2471498_2472428_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_LN831036.1_2472995_2473943_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_LN831036.1_2473944_2474922_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_LN831036.1_2474973_2475441_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_LN831036.1_2475451_2476144_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_LN831036.1_2476154_2477270_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_LN831036.1_2477247_2478255_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_LN831036.1_2478256_2479615_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
