The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	512605	521862	2813297		Pseudomonas_phage(50.0%)	9	NA	NA
WP_088577706.1|512605_513793_+	hypothetical protein	NA	J9STL4	Pseudomonas_phage	32.7	7.0e-43
WP_088577707.1|513782_515225_+	DUF2163 domain-containing protein	NA	NA	NA	NA	NA
WP_060872214.1|515215_515644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894569.1|515640_515877_+	hypothetical protein	NA	A0A0A1IV01	Pseudomonas_phage	50.7	1.6e-12
WP_088577708.1|515866_518692_+	hypothetical protein	NA	Q5ZQV9	Pseudomonas_phage	36.0	9.4e-70
WP_088577709.1|518684_519197_+	hypothetical protein	NA	G8CLC0	Synechococcus_phage	31.4	1.7e-09
WP_088371798.1|519795_520800_+	peptidase	NA	NA	NA	NA	NA
WP_042462790.1|521282_521624_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	49.1	1.1e-17
WP_082355533.1|521607_521862_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	54.8	5.3e-17
>prophage 2
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	820488	832314	2813297		Xylella_phage(90.91%)	15	NA	NA
WP_088577809.1|820488_821190_-	site-specific DNA-methyltransferase	NA	A0A097EWK8	Mycobacterium_phage	52.2	4.5e-58
WP_088577810.1|821571_822984_-	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	94.7	1.5e-225
WP_088577811.1|823068_823353_+	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_088577812.1|823354_823633_-	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	5.6e-44
WP_088577813.1|823629_825810_-	DNA polymerase	NA	C8CLG0	Xylella_phage	91.3	0.0e+00
WP_088577814.1|825811_827050_-	hypothetical protein	NA	C8CLG1	Xylella_phage	83.9	4.4e-181
WP_088577815.1|827040_827607_-	DUF2815 family protein	NA	C8CLG2	Xylella_phage	94.1	2.5e-99
WP_157293237.1|828880_829327_-	hypothetical protein	NA	C8CLG4	Xylella_phage	55.7	6.3e-29
WP_088577816.1|829381_829576_-	hypothetical protein	NA	C8CLG5	Xylella_phage	84.1	2.3e-20
WP_088577817.1|829607_829799_-	hypothetical protein	NA	C8CLG6	Xylella_phage	70.3	8.3e-15
WP_088577818.1|829822_830014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578559.1|830313_830796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577819.1|830855_831326_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_088578560.1|831322_831748_-	hypothetical protein	NA	C8CLG9	Xylella_phage	62.8	1.1e-33
WP_088577820.1|831753_832314_-	hypothetical protein	NA	C8CLG9	Xylella_phage	35.7	2.6e-08
>prophage 3
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	836020	912198	2813297	plate,portal,tRNA,terminase,protease,tail,capsid	Escherichia_phage(24.24%)	76	NA	NA
WP_088577825.1|836020_836356_+	hypothetical protein	NA	C8CLH4	Xylella_phage	67.0	7.0e-25
WP_088577826.1|836352_837180_+	hypothetical protein	NA	A4PE61	Ralstonia_virus	43.7	8.4e-19
WP_088577827.1|837315_839850_+	DNA primase	NA	C8CLH6	Xylella_phage	73.3	0.0e+00
WP_088578562.1|840592_841210_+	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	48.8	1.1e-26
WP_088577828.1|841176_841665_+	lysozyme	NA	A0A2I7RLY1	Vibrio_phage	53.1	7.6e-28
WP_088577829.1|841684_841996_+	hypothetical protein	NA	A0A172PZR6	Pseudomonas_phage	44.0	7.0e-19
WP_088577830.1|841985_842447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577831.1|842448_842673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577832.1|842845_843385_+	DNA-packaging protein	NA	A0A193GYK5	Enterobacter_phage	61.3	6.2e-47
WP_088577833.1|843377_845330_+|terminase	phage terminase large subunit family protein	terminase	D5LH04	Escherichia_phage	67.8	9.8e-252
WP_088577834.1|845333_845885_+	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.0	6.3e-39
WP_088577835.1|845881_847483_+|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.6	3.2e-131
WP_088577836.1|847466_849347_+|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.6	8.8e-165
WP_060872391.1|849364_849625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577837.1|849624_849948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577838.1|849944_850466_+	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	2.1e-12
WP_088577839.1|850441_850984_+	hypothetical protein	NA	D5LGZ6	Escherichia_phage	43.4	3.4e-37
WP_088577840.1|850980_851568_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_010893244.1|851572_851848_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_042463596.1|851858_852140_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.2	1.2e-14
WP_088577841.1|852196_852496_-	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	49.4	1.2e-15
WP_088577842.1|852499_852778_-	excinuclease ABC subunit A	NA	NA	NA	NA	NA
WP_042462908.1|852868_853207_+|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	59.5	2.3e-31
WP_088577843.1|853206_854100_+|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.5e-69
WP_088577844.1|854092_854650_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.5e-51
WP_088577845.1|854657_856250_+	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	36.2	2.7e-82
WP_088577846.1|856314_857493_+|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	9.8e-138
WP_088577847.1|857492_858002_+|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	1.5e-47
WP_088577848.1|858004_858292_+|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	9.0e-13
WP_088577849.1|858418_860638_+|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	49.5	1.4e-116
WP_088577850.1|860634_861117_+|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.0	1.7e-27
WP_088577851.1|861113_861332_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_088577852.1|861322_862405_+	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	45.7	4.8e-91
WP_010893891.1|862700_863042_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_088577853.1|863041_863650_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_088577854.1|863655_865653_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_023907802.1|865646_866606_-	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023907801.1|867069_868068_-	octaprenyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_004083791.1|868316_868811_+	single-stranded DNA-binding protein	NA	A0A0U1VYM4	Pseudomonas_phage	62.6	6.1e-33
WP_010893900.1|870424_871336_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010893902.1|873021_873549_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_031337907.1|875102_876830_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_004089222.1|876890_877160_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_010893907.1|877152_877545_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_046419455.1|877915_878788_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	33.0	7.0e-08
WP_004083779.1|878784_879735_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_004083778.1|880000_880318_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_088577855.1|880408_881797_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023906744.1|881838_882561_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.2	2.1e-26
WP_023906743.1|882560_883091_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_088577856.1|883068_883638_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_004089213.1|883634_884183_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010893914.1|884200_885202_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.7	3.4e-38
WP_004089208.1|885263_885491_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_088577857.1|885560_886838_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010893917.1|886834_887137_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
WP_031336788.1|887515_887845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088577858.1|888118_889003_+	acetyltransferase	NA	NA	NA	NA	NA
WP_088577859.1|889364_889604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023906737.1|893768_894557_-	DsbC family protein	NA	NA	NA	NA	NA
WP_088577860.1|894688_895663_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.2	5.0e-31
WP_088577861.1|895910_896804_-	ion transporter	NA	NA	NA	NA	NA
WP_088577862.1|896871_898107_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	24.8	4.2e-22
WP_023907787.1|898322_899687_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_088577863.1|899961_900573_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_088577864.1|901553_902489_-	peptidase	NA	NA	NA	NA	NA
WP_010893937.1|903261_903909_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_088577865.1|904016_904799_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023906730.1|904814_905582_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010893940.1|905690_906305_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_088577866.1|906301_907441_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_010893942.1|907437_907896_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_010893943.1|908069_908390_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.0	3.2e-11
WP_010893944.1|908522_910799_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.7	5.4e-169
WP_010893946.1|911131_911350_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010893947.1|911466_912198_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
>prophage 4
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1039972	1050767	2813297	terminase,portal	Pseudomonas_phage(33.33%)	11	NA	NA
WP_088577906.1|1039972_1041028_+	DNA primase	NA	A0A1S5RF89	Helicobacter_phage	41.8	5.7e-12
WP_088577907.1|1041024_1042530_+	virulence factor	NA	A0A2D1GN57	Marinobacter_phage	32.8	1.5e-58
WP_088577908.1|1042952_1043588_+	hypothetical protein	NA	A0A2I7S8M0	Vibrio_phage	40.7	6.9e-05
WP_088577909.1|1043584_1045675_+|terminase	phage terminase large subunit family protein	terminase	A0A1B2LRQ2	Wolbachia_phage	30.7	1.4e-73
WP_157293239.1|1045613_1045964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893037.1|1045960_1046197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088577910.1|1046193_1046721_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_157293240.1|1046873_1047164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052262867.1|1047290_1047719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894569.1|1047715_1047952_+	hypothetical protein	NA	A0A0A1IV01	Pseudomonas_phage	50.7	1.6e-12
WP_088577912.1|1047941_1050767_+	hypothetical protein	NA	J9RWA5	Pseudomonas_phage	35.5	4.7e-69
>prophage 5
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1381972	1391338	2813297	tail,plate	Aggregatibacter_phage(25.0%)	14	NA	NA
WP_088578038.1|1381972_1383367_+	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	33.0	3.9e-16
WP_023907681.1|1383378_1383645_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	42.7	1.3e-13
WP_031336679.1|1383628_1383856_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_088578039.1|1383966_1384737_+	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.2	1.6e-27
WP_088578040.1|1384736_1385030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023906521.1|1385026_1385857_+	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	4.0e-77
WP_088578041.1|1385853_1386495_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.4	4.6e-33
WP_088578042.1|1386491_1386845_+	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	6.9e-23
WP_088578043.1|1386937_1388083_+|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	48.9	4.8e-97
WP_088578044.1|1388079_1388640_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.1	1.4e-06
WP_088578045.1|1388643_1389807_+|tail	tail fiber protein	tail	A0A222ZFV4	Arthrobacter_phage	50.0	7.2e-08
WP_023906515.1|1389807_1390035_-	hypothetical protein	NA	C8CLJ6	Xylella_phage	62.9	1.7e-14
WP_088578046.1|1390034_1390601_-	SocA family protein	NA	I6R0L8	Salmonella_phage	34.4	7.5e-19
WP_088578047.1|1391005_1391338_+	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	2.4e-17
>prophage 6
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1515894	1522976	2813297	integrase	Xylella_phage(50.0%)	10	1511955:1511969	1532276:1532290
1511955:1511969	attL	GAGCGCTTGCGTAGT	NA	NA	NA	NA
WP_088578139.1|1515894_1516296_+	hypothetical protein	NA	C8CLG7	Xylella_phage	81.2	4.1e-56
WP_069107101.1|1516292_1516484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578140.1|1516507_1516699_+	hypothetical protein	NA	C8CLG6	Xylella_phage	71.9	2.0e-16
WP_088578141.1|1516719_1517646_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.2	1.3e-57
WP_088578142.1|1517642_1519286_+	hypothetical protein	NA	U6C712	Ralstonia_phage	38.5	5.6e-99
WP_162009303.1|1519318_1520083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578596.1|1520373_1521174_+	hypothetical protein	NA	Q7Y5V4	Haemophilus_phage	63.8	1.2e-35
WP_088578143.1|1521243_1521690_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.9	2.5e-33
WP_088578144.1|1521708_1521957_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	81.7	1.0e-33
WP_088578145.1|1521956_1522976_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	88.2	1.2e-168
1532276:1532290	attR	ACTACGCAAGCGCTC	NA	NA	NA	NA
>prophage 7
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1568774	1598757	2813297	tail,capsid,plate,terminase	Haemophilus_phage(28.57%)	43	NA	NA
WP_088578042.1|1568774_1569128_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	6.9e-23
WP_060870179.1|1570042_1571059_+	peptidase M4 family protein	NA	NA	NA	NA	NA
WP_081089730.1|1571066_1571420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088372204.1|1571443_1571716_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_167701495.1|1571762_1572254_+	SocA family protein	NA	I6R0L8	Salmonella_phage	34.8	5.1e-16
WP_023906515.1|1572253_1572481_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	62.9	1.7e-14
WP_088578045.1|1572481_1573645_-|tail	tail fiber protein	tail	A0A222ZFV4	Arthrobacter_phage	50.0	7.2e-08
WP_088578044.1|1573648_1574209_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.1	1.4e-06
WP_088578043.1|1574205_1575351_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	48.9	4.8e-97
WP_088578155.1|1575443_1575797_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	9.1e-23
WP_088578156.1|1575793_1576435_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.4	3.5e-33
WP_023906521.1|1576431_1577262_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	4.0e-77
WP_088578040.1|1577258_1577552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578039.1|1577551_1578322_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.2	1.6e-27
WP_031336679.1|1578432_1578660_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_023907681.1|1578643_1578910_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	42.7	1.3e-13
WP_088578157.1|1578921_1580811_-	hypothetical protein	NA	A0A2I7RBK9	Vibrio_phage	34.9	6.8e-32
WP_088578158.1|1580958_1581381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578159.1|1581377_1581815_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	63.1	1.4e-44
WP_088578160.1|1581824_1583321_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	47.4	4.7e-121
WP_167701496.1|1583321_1583825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578162.1|1583778_1584147_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	38.5	3.7e-19
WP_088578163.1|1584133_1584613_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.0	1.7e-08
WP_023906532.1|1584609_1584984_-	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	9.0e-13
WP_023906533.1|1584986_1585286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578164.1|1585349_1586333_-	DUF2184 domain-containing protein	NA	A0A2I7S4F8	Vibrio_phage	35.4	3.1e-44
WP_088578165.1|1586342_1586825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578166.1|1586852_1588043_-	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	41.3	2.8e-39
WP_088578167.1|1588042_1588888_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	32.7	5.9e-28
WP_088578597.1|1588799_1590146_-	DUF1073 domain-containing protein	NA	H9C106	Vibrio_phage	38.6	6.7e-66
WP_088578168.1|1590226_1591777_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	44.9	1.9e-112
WP_023906540.1|1591727_1592126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578169.1|1592412_1592874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894063.1|1592863_1593193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578170.1|1593185_1593686_-	lysozyme	NA	A0A2I7RLY1	Vibrio_phage	49.7	4.3e-26
WP_088578171.1|1593867_1594149_+	excinuclease ABC subunit A	NA	NA	NA	NA	NA
WP_004089519.1|1594158_1594458_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	45.9	1.1e-13
WP_088578172.1|1594540_1595239_-	hypothetical protein	NA	C8CLH7	Xylella_phage	83.9	1.6e-103
WP_031337812.1|1595258_1595621_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	2.5e-12
WP_088572695.1|1595668_1596358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578129.1|1596338_1597190_-	YdaU family protein	NA	A0A142K7R2	Mycobacterium_phage	63.4	4.7e-17
WP_023907990.1|1597233_1597524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578130.1|1597644_1598757_-	hypothetical protein	NA	C8CLG1	Xylella_phage	56.7	3.7e-110
>prophage 8
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1605272	1612354	2813297	integrase	Xylella_phage(50.0%)	10	1601333:1601347	1621654:1621668
1601333:1601347	attL	GAGCGCTTGCGTAGT	NA	NA	NA	NA
WP_088578139.1|1605272_1605674_+	hypothetical protein	NA	C8CLG7	Xylella_phage	81.2	4.1e-56
WP_069107101.1|1605670_1605862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578140.1|1605885_1606077_+	hypothetical protein	NA	C8CLG6	Xylella_phage	71.9	2.0e-16
WP_088578141.1|1606097_1607024_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.2	1.3e-57
WP_088578142.1|1607020_1608664_+	hypothetical protein	NA	U6C712	Ralstonia_phage	38.5	5.6e-99
WP_162009303.1|1608696_1609461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578596.1|1609751_1610552_+	hypothetical protein	NA	Q7Y5V4	Haemophilus_phage	63.8	1.2e-35
WP_088578143.1|1610621_1611068_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.9	2.5e-33
WP_088578144.1|1611086_1611335_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	81.7	1.0e-33
WP_088578145.1|1611334_1612354_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	88.2	1.2e-168
1621654:1621668	attR	ACTACGCAAGCGCTC	NA	NA	NA	NA
>prophage 9
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1658152	1688504	2813297	tail,capsid,plate,terminase	Haemophilus_phage(27.59%)	44	NA	NA
WP_088578042.1|1658152_1658506_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	6.9e-23
WP_060870179.1|1659420_1660437_+	peptidase M4 family protein	NA	NA	NA	NA	NA
WP_081089730.1|1660444_1660798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088372204.1|1660821_1661094_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_167701495.1|1661140_1661632_+	SocA family protein	NA	I6R0L8	Salmonella_phage	34.8	5.1e-16
WP_023906515.1|1661631_1661859_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	62.9	1.7e-14
WP_088578045.1|1661859_1663023_-|tail	tail fiber protein	tail	A0A222ZFV4	Arthrobacter_phage	50.0	7.2e-08
WP_088578044.1|1663026_1663587_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.1	1.4e-06
WP_088578043.1|1663583_1664729_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	48.9	4.8e-97
WP_088578155.1|1664821_1665175_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	9.1e-23
WP_088578156.1|1665171_1665813_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.4	3.5e-33
WP_023906521.1|1665809_1666640_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	4.0e-77
WP_088578040.1|1666636_1666930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578039.1|1666929_1667700_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.2	1.6e-27
WP_031336679.1|1667810_1668038_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_023907681.1|1668021_1668288_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	42.7	1.3e-13
WP_088578157.1|1668299_1670189_-	hypothetical protein	NA	A0A2I7RBK9	Vibrio_phage	34.9	6.8e-32
WP_088578158.1|1670336_1670759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578159.1|1670755_1671193_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	63.1	1.4e-44
WP_088578160.1|1671202_1672699_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	47.4	4.7e-121
WP_167701496.1|1672699_1673203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578162.1|1673156_1673525_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	38.5	3.7e-19
WP_088578163.1|1673511_1673991_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.0	1.7e-08
WP_023906532.1|1673987_1674362_-	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	9.0e-13
WP_023906533.1|1674364_1674664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578164.1|1674727_1675711_-	DUF2184 domain-containing protein	NA	A0A2I7S4F8	Vibrio_phage	35.4	3.1e-44
WP_088578165.1|1675720_1676203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578166.1|1676230_1677421_-	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	41.3	2.8e-39
WP_088578173.1|1677420_1678266_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	32.7	5.9e-28
WP_088578174.1|1678334_1678673_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_023907694.1|1678669_1678951_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	8.8e-13
WP_088578598.1|1678999_1680304_-	DUF1073 domain-containing protein	NA	H9C106	Vibrio_phage	37.1	2.6e-67
WP_088578168.1|1680384_1681935_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	44.9	1.9e-112
WP_023906540.1|1681885_1682284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578169.1|1682570_1683032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578175.1|1683021_1683351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578176.1|1683343_1683844_-	lysozyme	NA	A0A2I7S753	Vibrio_phage	50.3	5.6e-26
WP_004085696.1|1684046_1684385_-	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
WP_010894061.1|1684371_1684638_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
WP_088578177.1|1684825_1685524_-	hypothetical protein	NA	C8CLH7	Xylella_phage	83.0	2.7e-103
WP_088578599.1|1685652_1686063_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	45.7	1.2e-10
WP_088578178.1|1686110_1686800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031336702.1|1687997_1688237_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_060872184.1|1688255_1688504_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	81.7	1.4e-33
>prophage 10
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	1837557	1850449	2813297	integrase,tRNA	uncultured_Caudovirales_phage(40.0%)	12	1843659:1843673	1850460:1850474
WP_023907479.1|1837557_1838490_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	36.6	4.9e-15
WP_010894730.1|1838489_1839284_-	ParA family protein	NA	A0A0K2FLP4	Brevibacillus_phage	29.7	8.0e-19
WP_046420578.1|1839581_1840535_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010894734.1|1841340_1842621_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	6.5e-95
1843659:1843673	attL	AATAGTTTCCGCAAC	NA	NA	NA	NA
WP_088578218.1|1843697_1844759_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	53.3	4.9e-96
WP_010894737.1|1844770_1845067_-	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	48.1	4.5e-07
WP_088578606.1|1845063_1845378_-	hypothetical protein	NA	C8CLF7	Xylella_phage	93.4	2.8e-31
WP_088578219.1|1846997_1847276_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	93.4	8.1e-43
WP_088578220.1|1847277_1847661_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_088578221.1|1847745_1849143_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	94.3	1.3e-258
WP_088578222.1|1849139_1849376_+	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	52.6	1.1e-08
WP_088578223.1|1849387_1850449_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	58.6	1.9e-103
1850460:1850474	attR	GTTGCGGAAACTATT	NA	NA	NA	NA
>prophage 11
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	2813297	2456362	2542389	2813297	plate,portal,integrase,tRNA,terminase,tail,capsid	Xylella_phage(37.5%)	95	2489021:2489037	2545626:2545642
WP_023908085.1|2456362_2457097_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_031337090.1|2457093_2457888_-	thiazole synthase	NA	NA	NA	NA	NA
WP_031337091.1|2457936_2458137_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_010893304.1|2458278_2460072_+	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
WP_023908086.1|2460464_2460713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157293268.1|2460992_2461535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578403.1|2461525_2463619_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	37.0	5.5e-91
WP_031337093.1|2463979_2464414_-	phosphotransferase	NA	NA	NA	NA	NA
WP_023906986.1|2464391_2466758_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_080507193.1|2466935_2467583_-	fatty acyl CoA synthetase	NA	NA	NA	NA	NA
WP_023908089.1|2468487_2468775_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_088578404.1|2469017_2469758_-	ketosynthase	NA	NA	NA	NA	NA
WP_010893294.1|2469732_2470002_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_088578405.1|2470365_2471346_+	pteridine-dependent deoxygenase	NA	NA	NA	NA	NA
WP_088578406.1|2471771_2473067_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010893290.1|2473060_2473405_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010893289.1|2473401_2473809_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_088578407.1|2473805_2474246_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_088578408.1|2474242_2475028_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010893285.1|2475600_2476176_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	67.7	2.8e-69
WP_023906990.1|2476444_2477407_-	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
WP_088578409.1|2477406_2479266_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.6	5.2e-85
WP_088372124.1|2479401_2481021_-	N-acetylmuramoyl-L-alanine amidase	NA	Q0H257	Geobacillus_phage	27.6	1.0e-12
WP_046418493.1|2481079_2481568_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_088578410.1|2481564_2483055_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_088578411.1|2483505_2484840_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	34.5	1.4e-36
WP_088578412.1|2484905_2485763_-	virulence factor family protein	NA	NA	NA	NA	NA
WP_088578624.1|2485889_2487692_-	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	35.2	6.3e-27
WP_023908098.1|2487814_2488903_+	ribonuclease D	NA	NA	NA	NA	NA
2489021:2489037	attL	ACTCCAATAATCAGGGT	NA	NA	NA	NA
WP_010893272.1|2489181_2489586_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010893271.1|2490371_2491427_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_088578413.1|2491574_2492174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023908099.1|2492410_2492554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031337099.1|2493121_2493478_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010893266.1|2493458_2493758_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.4	3.6e-12
WP_088578414.1|2493781_2496160_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_031337101.1|2496243_2497239_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	35.5	9.7e-30
WP_010893263.1|2497517_2497877_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_004090402.1|2497887_2498085_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_075584689.1|2498330_2498858_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.7	6.3e-12
WP_010893260.1|2498925_2500833_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.5	1.3e-126
WP_088578415.1|2501924_2503007_-	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	48.4	8.8e-93
WP_023906711.1|2502997_2503216_-|tail	tail protein	tail	NA	NA	NA	NA
WP_088578416.1|2503212_2503695_-|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.8	5.7e-28
WP_088578417.1|2503691_2505911_-|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	47.8	1.5e-107
WP_088578418.1|2506037_2506325_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	5.3e-13
WP_088578419.1|2506327_2506837_-|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	2.0e-47
WP_088577846.1|2506836_2508015_-|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	9.8e-138
WP_088577845.1|2508079_2509672_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	36.2	2.7e-82
WP_088577844.1|2509679_2510237_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.5e-51
WP_088577843.1|2510229_2511123_-|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.5e-69
WP_042462908.1|2511122_2511461_-|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	59.5	2.3e-31
WP_060872141.1|2511610_2511874_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_060872142.1|2511860_2512142_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_088578420.1|2512187_2512775_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_088578421.1|2512771_2513314_-	hypothetical protein	NA	D5LGZ6	Escherichia_phage	43.4	2.6e-37
WP_088578422.1|2513289_2513811_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	1.6e-12
WP_088578423.1|2513807_2514131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578424.1|2514130_2514391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578425.1|2514408_2516289_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.7	3.0e-165
WP_088578426.1|2516272_2517871_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	49.0	9.2e-131
WP_088578427.1|2517867_2518416_-	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.6	3.7e-39
WP_088578428.1|2518419_2520372_-|terminase	phage terminase large subunit family protein	terminase	A0A088FQV3	Escherichia_phage	67.6	9.8e-252
WP_088578429.1|2520364_2520898_-	DNA-packaging protein	NA	A0A193GYK5	Enterobacter_phage	59.2	8.0e-47
WP_069107045.1|2521070_2521295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578430.1|2521296_2521758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088577829.1|2521747_2522059_-	hypothetical protein	NA	A0A172PZR6	Pseudomonas_phage	44.0	7.0e-19
WP_088578431.1|2522078_2522567_-	lysozyme	NA	A0A2I7RLY1	Vibrio_phage	52.4	9.9e-28
WP_088578625.1|2522506_2523151_-	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	50.0	8.5e-27
WP_088578432.1|2523647_2526182_-	DNA primase	NA	C8CLH6	Xylella_phage	71.3	0.0e+00
WP_088578626.1|2526320_2526890_-	hypothetical protein	NA	C8CLH5	Xylella_phage	67.2	1.2e-64
WP_088578433.1|2527179_2527431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578434.1|2527499_2527748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578435.1|2527744_2527933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578436.1|2528549_2528750_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_088578437.1|2528823_2529594_+	helix-turn-helix transcriptional regulator	NA	C8CLH0	Xylella_phage	36.0	5.4e-28
WP_052262873.1|2529834_2530146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578438.1|2530335_2530863_+	hypothetical protein	NA	C8CLG9	Xylella_phage	34.8	3.6e-07
WP_088578439.1|2530859_2531228_+	hypothetical protein	NA	C8CLG9	Xylella_phage	61.9	2.2e-32
WP_088578440.1|2531291_2531696_+	hypothetical protein	NA	C8CLG8	Xylella_phage	68.3	1.8e-11
WP_088578559.1|2531752_2532235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578441.1|2532534_2532726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088578442.1|2532749_2532941_+	hypothetical protein	NA	C8CLG6	Xylella_phage	75.0	3.6e-18
WP_088578443.1|2532972_2533170_+	hypothetical protein	NA	C8CLG5	Xylella_phage	93.8	5.4e-25
WP_088578444.1|2533221_2533665_+	hypothetical protein	NA	C8CLG4	Xylella_phage	75.7	3.5e-32
WP_088578445.1|2533661_2534939_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	82.7	1.4e-201
WP_088578446.1|2534938_2535505_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	95.2	4.6e-101
WP_088578627.1|2535573_2536722_+	hypothetical protein	NA	C8CLG1	Xylella_phage	84.4	2.5e-178
WP_088578447.1|2536723_2538904_+	DNA polymerase	NA	C8CLG0	Xylella_phage	92.8	0.0e+00
WP_088578448.1|2538900_2539179_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	92.3	4.7e-43
WP_023907477.1|2539180_2539486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088578449.1|2539549_2540968_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	93.4	6.9e-263
WP_167701484.1|2540964_2541129_+	hypothetical protein	NA	C8CLF6	Xylella_phage	88.9	2.4e-18
WP_088578450.1|2541121_2541370_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	86.6	3.2e-35
WP_088578451.1|2541369_2542389_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	93.8	4.6e-184
2545626:2545642	attR	ACTCCAATAATCAGGGT	NA	NA	NA	NA
