The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	453704	509908	2681334	tRNA,portal,integrase,terminase,protease	Stenotrophomonas_phage(17.65%)	58	482907:482922	501490:501505
WP_010892974.1|453704_455399_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010892975.1|455548_455923_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_004083585.1|457029_457380_+	DMT family protein	NA	NA	NA	NA	NA
WP_031336286.1|457963_458350_-	response regulator	NA	B5LWA6	Feldmannia_species_virus	29.6	9.6e-10
WP_031336287.1|458442_459447_-	oxidoreductase	NA	NA	NA	NA	NA
WP_010892980.1|459593_460733_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010892981.1|460729_461593_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_031336290.1|461752_461938_+	DUF2065 family protein	NA	NA	NA	NA	NA
WP_031336291.1|462130_463423_+	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	37.7	4.9e-74
WP_010892985.1|463939_464944_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010892986.1|466473_466899_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	40.2	1.3e-18
WP_042463544.1|466924_468130_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_023906157.1|468116_468926_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_020851188.1|469876_470515_+	YfgM family protein	NA	NA	NA	NA	NA
WP_031336297.1|470515_471751_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010892993.1|471776_473174_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010892994.1|473406_474546_-	molybdopterin-synthase adenylyltransferase MoeB	NA	A0A1V0SIK8	Klosneuvirus	28.0	6.8e-11
WP_010892998.1|475469_477038_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010893000.1|477555_478905_+	LOG family protein YgdH	NA	NA	NA	NA	NA
WP_010893001.1|479050_479563_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_031337553.1|479559_480042_+	type IV pilus modification protein PilV	NA	NA	NA	NA	NA
WP_023906163.1|480038_481295_+	PilW family protein	NA	NA	NA	NA	NA
WP_010893004.1|481294_481789_+	fimbrial protein	NA	NA	NA	NA	NA
WP_031337555.1|481792_486358_+	pilus assembly protein	NA	NA	NA	NA	NA
482907:482922	attL	GCTGTGGGTGGATCGC	NA	NA	NA	NA
WP_031337557.1|486354_486810_+	type IV pilin protein	NA	NA	NA	NA	NA
WP_010893008.1|487046_488219_-|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	53.2	2.5e-117
WP_010893009.1|488218_488491_-	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	51.7	1.7e-08
WP_010893010.1|488512_488959_-	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	51.0	6.1e-32
WP_080507227.1|488942_489368_-	DUF5131 family protein	NA	NA	NA	NA	NA
WP_010893012.1|489405_489612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893013.1|489608_490154_-	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	36.3	7.2e-27
WP_042462740.1|490150_490744_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_080507182.1|490836_491373_-	pilin	NA	NA	NA	NA	NA
WP_155114980.1|491372_491513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893016.1|491505_491772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462748.1|491768_492047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907291.1|492043_492265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893018.1|492261_492711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893019.1|492707_493172_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_010893020.1|493168_493564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893021.1|493560_493959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893023.1|494458_494761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463557.1|495064_496222_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010893025.1|496221_496689_+	DUF4411 family protein	NA	NA	NA	NA	NA
WP_042463560.1|497028_497481_-	hypothetical protein	NA	C7BGF7	Burkholderia_phage	47.1	7.8e-11
WP_010893028.1|497595_498027_-	transcriptional regulator	NA	A0A2D1GNH0	Pseudomonas_phage	57.4	3.8e-15
WP_042462755.1|498103_498400_+	transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	57.1	1.9e-13
WP_042462759.1|498386_498737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462762.1|498794_499418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462765.1|499519_499903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893033.1|499901_500954_+	hypothetical protein	NA	A0A1S5RF89	Helicobacter_phage	40.5	1.3e-11
WP_010893034.1|500953_502420_+	virulence factor	NA	A0A2D1GN57	Marinobacter_phage	33.3	1.3e-59
501490:501505	attR	GCTGTGGGTGGATCGC	NA	NA	NA	NA
WP_042462768.1|502816_503425_+	hypothetical protein	NA	A0A2I7S8M0	Vibrio_phage	40.7	8.6e-05
WP_010893036.1|503421_505521_+|terminase	phage terminase large subunit family protein	terminase	A0A1B2LRQ2	Wolbachia_phage	30.6	6.1e-74
WP_042462770.1|505597_505810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893037.1|505806_506043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893038.1|506039_507602_+|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	39.0	5.9e-90
WP_042462775.1|507598_509908_+|protease	Clp protease ClpP	protease	B7SYD7	Stenotrophomonas_phage	37.6	3.3e-81
>prophage 2
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	650430	735946	2681334	portal,tRNA,plate,capsid,terminase,tail	Xylella_phage(31.25%)	96	NA	NA
WP_010893203.1|650430_650667_-	hypothetical protein	NA	C8CLF6	Xylella_phage	60.8	6.1e-07
WP_010893204.1|650663_652082_-	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	94.5	3.3e-265
WP_042462867.1|652145_652574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893206.1|652575_652854_-	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010893207.1|652850_655031_-	DNA polymerase	NA	C8CLG0	Xylella_phage	91.9	0.0e+00
WP_010893208.1|655032_656544_-	hypothetical protein	NA	C8CLG1	Xylella_phage	66.4	7.0e-173
WP_010893209.1|656616_657183_-	DUF2815 family protein	NA	C8CLG2	Xylella_phage	96.8	4.1e-102
WP_010893210.1|657182_658460_-	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	83.5	7.2e-203
WP_155114982.1|658456_658954_-	hypothetical protein	NA	C8CLG4	Xylella_phage	76.1	2.4e-37
WP_010893212.1|658953_659145_-	hypothetical protein	NA	C8CLG5	Xylella_phage	69.5	1.0e-12
WP_010893213.1|659141_659414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893214.1|659445_659640_-	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	7.9e-21
WP_010893215.1|659636_660038_-	hypothetical protein	NA	C8CLG7	Xylella_phage	65.4	1.7e-41
WP_010893216.1|660037_660427_-	hypothetical protein	NA	C8CLG8	Xylella_phage	80.4	4.8e-17
WP_010893217.1|660423_660981_-	hypothetical protein	NA	C8CLG9	Xylella_phage	38.0	2.1e-10
WP_155114983.1|661327_661531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155114984.1|661705_662443_-	helix-turn-helix domain-containing protein	NA	E7C9R0	Salmonella_phage	33.2	2.1e-21
WP_010893221.1|662435_662660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023907743.1|662833_663325_-	hypothetical protein	NA	A0A127KNL4	Pseudomonas_phage	28.6	1.5e-15
WP_023907741.1|663366_663672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462880.1|663799_663988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893226.1|663984_664233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462883.1|664293_664557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080507192.1|664585_664852_+	hypothetical protein	NA	C8CLH4	Xylella_phage	83.9	1.3e-34
WP_010893228.1|664848_665481_+	phage antirepressor	NA	A4PE61	Ralstonia_virus	43.2	1.9e-18
WP_042462886.1|665617_668152_+	DNA primase	NA	C8CLH6	Xylella_phage	72.4	0.0e+00
WP_010893230.1|668694_668892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463593.1|669084_669702_+	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	50.0	2.4e-26
WP_010893231.1|669668_670163_+	lysozyme	NA	I2GUG4	Acinetobacter_phage	50.7	8.5e-27
WP_010893232.1|670173_670485_+	hypothetical protein	NA	A0A172PZR6	Pseudomonas_phage	43.0	2.0e-18
WP_042462889.1|670474_670936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462892.1|670937_671162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462895.1|671334_671874_+	DNA-packaging protein	NA	A0A193GYK5	Enterobacter_phage	61.3	1.1e-46
WP_042462898.1|671866_673819_+|terminase	phage terminase large subunit family protein	terminase	D5LH04	Escherichia_phage	66.6	1.7e-251
WP_010893236.1|673822_674371_+	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.0	1.4e-38
WP_010893237.1|674367_675966_+|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.3	3.5e-130
WP_010893238.1|675949_677830_+|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.9	2.1e-166
WP_010893239.1|677847_678108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462902.1|678107_678431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893241.1|678427_678949_+	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	2.8e-12
WP_042462905.1|678924_679467_+	hypothetical protein	NA	D5LGZ6	Escherichia_phage	42.9	5.8e-37
WP_010893243.1|679463_680051_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_010893244.1|680055_680331_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_042463596.1|680341_680623_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.2	1.2e-14
WP_042462908.1|680830_681169_+|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	59.5	2.3e-31
WP_010893248.1|681168_682062_+|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	45.8	2.8e-68
WP_010893249.1|682054_682612_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	55.6	3.0e-52
WP_010894924.1|682619_684212_+	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	36.8	9.9e-85
WP_042462912.1|684276_685455_+|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	2.0e-138
WP_010893252.1|685454_685964_+|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	2.0e-47
WP_010893253.1|685966_686254_+|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	9.0e-13
WP_010893254.1|686380_688600_+|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	48.5	7.8e-112
WP_010893255.1|688596_689079_+|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.0	1.3e-27
WP_010893256.1|689075_689294_+|tail	tail protein	tail	NA	NA	NA	NA
WP_010893257.1|689284_690367_+	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	47.8	5.7e-92
WP_010893260.1|691458_693366_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.5	1.3e-126
WP_075584689.1|693433_693961_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.7	6.3e-12
WP_004090402.1|694220_694418_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010893263.1|694428_694788_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_031338050.1|695065_696061_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	35.5	2.2e-29
WP_010893265.1|696144_698523_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010893266.1|698546_698846_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.4	3.6e-12
WP_031337099.1|698826_699183_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023908099.1|699750_699894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080507228.1|700130_700730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893271.1|700877_701933_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_010893272.1|702718_703123_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010893274.1|703401_704490_-	ribonuclease D	NA	NA	NA	NA	NA
WP_038200859.1|704612_706415_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	34.4	1.2e-25
WP_010893277.1|706540_707398_+	virulence factor family protein	NA	NA	NA	NA	NA
WP_010893278.1|707463_708798_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	34.5	2.5e-36
WP_010893280.1|709247_710738_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010893281.1|710734_711223_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010893283.1|713035_714895_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.6	4.0e-85
WP_023906990.1|714894_715857_+	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
WP_010893285.1|716125_716701_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	67.7	2.8e-69
WP_031338049.1|717273_718059_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010893288.1|718055_718496_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010893289.1|718492_718900_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010893290.1|718896_719241_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010893291.1|719234_720530_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_042462926.1|720955_721936_-	pteridine-dependent deoxygenase	NA	NA	NA	NA	NA
WP_010893294.1|722299_722569_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_010893295.1|722543_723284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893297.1|723525_723813_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_010893298.1|723809_724790_+	acyltransferase	NA	NA	NA	NA	NA
WP_080507193.1|724713_725361_+	fatty acyl CoA synthetase	NA	NA	NA	NA	NA
WP_010893299.1|725339_725564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893300.1|725556_727923_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_031338048.1|727900_728335_+	phosphotransferase	NA	NA	NA	NA	NA
WP_031338047.1|728695_730789_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	37.2	1.0e-92
WP_010893302.1|730795_731452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893304.1|732236_734030_-	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
WP_031338046.1|734171_734372_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_031337090.1|734420_735215_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010893307.1|735211_735946_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	1515371	1520416	2681334		Xylella_phage(28.57%)	9	NA	NA
WP_010894056.1|1515371_1515620_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	82.9	8.0e-34
WP_010894057.1|1515638_1515878_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_042463158.1|1516251_1517139_+	YdaU family protein	NA	A0A0P0I481	Acinetobacter_phage	42.7	4.5e-18
WP_042463161.1|1517119_1517809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463672.1|1517856_1518219_+	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.0	2.8e-11
WP_042463164.1|1518238_1518937_+	hypothetical protein	NA	C8CLH7	Xylella_phage	82.6	1.8e-102
WP_010894061.1|1519124_1519391_+	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
WP_004085696.1|1519377_1519716_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
WP_042463169.1|1519918_1520416_+	lysozyme	NA	A0A2I7S753	Vibrio_phage	51.7	2.3e-27
>prophage 4
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	1523473	1543916	2681334	head	Haemophilus_phage(38.89%)	29	NA	NA
WP_080507236.1|1523473_1524778_+	DUF1073 domain-containing protein	NA	H9C106	Vibrio_phage	37.6	6.9e-68
WP_004090283.1|1524826_1525108_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_010894070.1|1525104_1525443_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_010894071.1|1525515_1526361_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	33.1	2.7e-28
WP_042463176.1|1526360_1527551_+	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	42.2	1.9e-40
WP_010894073.1|1527578_1528061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894074.1|1528070_1529054_+	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.3	9.9e-51
WP_010894075.1|1529117_1529417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894076.1|1529419_1529794_+	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	1.2e-12
WP_010894077.1|1529790_1530264_+	hypothetical protein	NA	M4SN98	Psychrobacter_phage	25.3	6.7e-05
WP_010894078.1|1530244_1530625_+	hypothetical protein	NA	Q776V7	Haemophilus_phage	36.5	2.3e-16
WP_010894079.1|1530611_1531082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894080.1|1531082_1532579_+	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	48.0	7.3e-122
WP_010894081.1|1532588_1533026_+	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	2.3e-44
WP_010894082.1|1533022_1533445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894084.1|1533592_1535482_+	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	27.7	1.2e-23
WP_042463681.1|1535808_1536057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894086.1|1536432_1536861_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_042463183.1|1536861_1537116_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_010894088.1|1537227_1537998_+	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.7	6.4e-29
WP_010894089.1|1537997_1538315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894090.1|1538311_1539142_+	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	52.6	1.4e-77
WP_010894091.1|1539138_1539780_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.5	4.6e-33
WP_010894092.1|1539776_1540130_+	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	2.4e-23
WP_004085592.1|1540185_1540479_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
WP_010894094.1|1540481_1540778_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	53.7	3.4e-23
WP_031336674.1|1541378_1541825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894098.1|1542066_1543044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023906641.1|1543040_1543916_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	8.3e-09
>prophage 5
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	1585966	1604781	2681334	integrase	Xylella_phage(35.29%)	31	1568464:1568478	1595050:1595064
1568464:1568478	attL	TTGTAGCGTGCTTTC	NA	NA	NA	NA
WP_010894137.1|1585966_1586986_-|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	88.8	1.1e-169
WP_010894138.1|1586975_1587233_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	82.4	5.7e-35
WP_010894139.1|1587251_1587707_-	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	49.7	2.4e-31
WP_080507237.1|1587776_1588616_-	hypothetical protein	NA	B6SD63	Bacteriophage	38.2	8.2e-22
WP_162009303.1|1588720_1589485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894142.1|1589517_1591161_-	hypothetical protein	NA	U6C712	Ralstonia_phage	37.6	3.8e-95
WP_010894143.1|1591157_1592084_-	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.8	5.1e-57
WP_010894144.1|1592099_1592921_-	YfdQ family protein	NA	I3PUY7	Vibrio_phage	40.4	6.3e-43
WP_010894145.1|1592941_1593316_-	hypothetical protein	NA	U5P4J6	Shigella_phage	44.6	5.6e-15
WP_010894146.1|1593336_1593528_-	hypothetical protein	NA	C8CLG6	Xylella_phage	70.3	1.3e-15
WP_010894147.1|1593551_1593743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894148.1|1593739_1594141_-	hypothetical protein	NA	C8CLG7	Xylella_phage	78.2	3.3e-53
WP_010894149.1|1594140_1594599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080507209.1|1594595_1595141_-	hypothetical protein	NA	NA	NA	NA	NA
1595050:1595064	attR	TTGTAGCGTGCTTTC	NA	NA	NA	NA
WP_010894151.1|1595532_1595721_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_010894152.1|1595717_1596329_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_042463200.1|1596379_1597054_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LQ62	Mannheimia_phage	30.1	5.8e-18
WP_042463203.1|1597138_1597384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463205.1|1597380_1597686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042463208.1|1598065_1598254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894156.1|1598250_1598499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463212.1|1598495_1598879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463693.1|1599082_1600195_+	hypothetical protein	NA	C8CLG1	Xylella_phage	59.5	2.1e-110
WP_023906549.1|1600191_1600500_+	DUF1376 domain-containing protein	NA	A0A0R6PKK6	Moraxella_phage	42.2	2.1e-15
WP_080507238.1|1600508_1601585_+	YdaU family protein	NA	A0A142K7R2	Mycobacterium_phage	60.5	2.7e-17
WP_042463161.1|1601565_1602255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463696.1|1602302_1602665_+	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	4.3e-12
WP_042463215.1|1602684_1603383_+	hypothetical protein	NA	C8CLH7	Xylella_phage	78.3	1.6e-95
WP_080507210.1|1603435_1603690_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_004085025.1|1603686_1604022_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_042463169.1|1604283_1604781_+	lysozyme	NA	A0A2I7S753	Vibrio_phage	51.7	2.3e-27
>prophage 6
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	1608155	1630494	2681334	plate,tail,head	Haemophilus_phage(31.82%)	35	NA	NA
WP_162261600.1|1608155_1609142_+	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	38.7	2.1e-45
WP_004090283.1|1609190_1609472_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_010894070.1|1609468_1609807_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_010894071.1|1609879_1610725_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	33.1	2.7e-28
WP_042463176.1|1610724_1611915_+	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	42.2	1.9e-40
WP_010894073.1|1611942_1612425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894074.1|1612434_1613418_+	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.3	9.9e-51
WP_010894075.1|1613481_1613781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894076.1|1613783_1614158_+	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	1.2e-12
WP_010894077.1|1614154_1614628_+	hypothetical protein	NA	M4SN98	Psychrobacter_phage	25.3	6.7e-05
WP_010894078.1|1614608_1614989_+	hypothetical protein	NA	Q776V7	Haemophilus_phage	36.5	2.3e-16
WP_010894079.1|1614975_1615446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894080.1|1615446_1616943_+	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	48.0	7.3e-122
WP_010894081.1|1616952_1617390_+	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	2.3e-44
WP_010894082.1|1617386_1617809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894164.1|1617956_1619846_+	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	28.0	6.8e-24
WP_088371569.1|1620175_1620352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894166.1|1620385_1620574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894167.1|1620578_1620749_-	antitoxin	NA	NA	NA	NA	NA
WP_042463219.1|1620801_1621077_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	43.9	3.5e-14
WP_031336679.1|1621060_1621288_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_010894169.1|1621398_1622169_+	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.3	3.7e-29
WP_010894170.1|1622168_1622486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894171.1|1622482_1623313_+	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
WP_010894172.1|1623309_1623951_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.1	1.3e-32
WP_010894173.1|1623947_1624301_+	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.8	2.8e-24
WP_004089254.1|1624311_1624617_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	43.6	1.1e-11
WP_042463224.1|1624613_1624916_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	58.1	3.4e-26
WP_042463227.1|1625014_1626160_+|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	48.4	6.9e-96
WP_010894176.1|1626156_1626717_+	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	41.9	1.5e-32
WP_010894177.1|1626720_1627884_+|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.4e-08
WP_010894178.1|1627916_1628396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894179.1|1628429_1629545_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_010894180.1|1629560_1629851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894181.1|1630161_1630494_+	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	7.0e-17
>prophage 7
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	2006123	2014811	2681334	portal,terminase	Pseudomonas_phage(33.33%)	13	NA	NA
WP_031336505.1|2006123_2006456_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	39.8	5.4e-17
WP_075584631.1|2006778_2007021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023906406.1|2007033_2007285_+	glycine zipper family protein	NA	NA	NA	NA	NA
WP_023906405.1|2007379_2007679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894565.1|2007729_2008122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894567.1|2008457_2008970_-	hypothetical protein	NA	A0A0E3FDC5	Synechococcus_phage	47.5	4.5e-07
WP_010894568.1|2008962_2011788_-	hypothetical protein	NA	J9RWA5	Pseudomonas_phage	35.9	1.1e-70
WP_010894569.1|2011777_2012014_-	hypothetical protein	NA	A0A0A1IV01	Pseudomonas_phage	50.7	1.6e-12
WP_052262867.1|2012010_2012439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907545.1|2012565_2012856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894572.1|2013008_2013488_-|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	32.8	5.2e-13
WP_042463315.1|2013484_2013721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080507242.1|2013797_2014811_-|terminase	phage terminase large subunit family protein	terminase	A0A1B2LRQ2	Wolbachia_phage	28.3	9.6e-17
>prophage 8
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	2170923	2183105	2681334	integrase,tRNA	Xylella_phage(45.45%)	14	2158460:2158473	2193129:2193142
2158460:2158473	attL	CACCAAGACCACGC	NA	NA	NA	NA
WP_010894729.1|2170923_2171856_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	36.6	3.7e-15
WP_010894730.1|2171855_2172650_-	ParA family protein	NA	A0A0K2FLP4	Brevibacillus_phage	29.7	8.0e-19
WP_010894731.1|2172948_2173902_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010894734.1|2174707_2175988_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	6.5e-95
WP_010894735.1|2176109_2176805_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_010894736.1|2177040_2178102_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	53.5	4.4e-97
WP_010894737.1|2178113_2178410_-	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	48.1	4.5e-07
WP_080507243.1|2178406_2178721_-	hypothetical protein	NA	C8CLF7	Xylella_phage	89.2	8.3e-28
WP_155114997.1|2178709_2179579_+	DNA polymerase	NA	C8CLG0	Xylella_phage	90.6	1.6e-129
WP_081089917.1|2179812_2180334_+	hypothetical protein	NA	C8CLG0	Xylella_phage	92.5	1.4e-91
WP_010893206.1|2180330_2180609_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010894740.1|2180610_2180919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052262871.1|2181018_2181696_+	KilA-N domain-containing protein	NA	A0A1W6JP13	Morganella_phage	42.9	3.6e-12
WP_010894742.1|2181692_2183105_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	93.2	1.3e-221
2193129:2193142	attR	GCGTGGTCTTGGTG	NA	NA	NA	NA
>prophage 9
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	2681334	2363118	2406302	2681334	portal,plate,capsid,integrase,terminase,tail	Xylella_phage(42.86%)	57	2373551:2373565	2407240:2407254
WP_010894920.1|2363118_2363526_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010894921.1|2363845_2364928_-	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	48.4	6.7e-93
WP_010893256.1|2364918_2365137_-|tail	tail protein	tail	NA	NA	NA	NA
WP_010893255.1|2365133_2365616_-|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.0	1.3e-27
WP_010894922.1|2365612_2367832_-|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	46.6	1.1e-108
WP_010894923.1|2367958_2368246_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	6.9e-13
WP_010893252.1|2368248_2368758_-|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	2.0e-47
WP_042462912.1|2368757_2369936_-|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	2.0e-138
WP_010894924.1|2370000_2371593_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	36.8	9.9e-85
WP_010893249.1|2371600_2372158_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	55.6	3.0e-52
WP_010893248.1|2372150_2373044_-|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	45.8	2.8e-68
WP_042462908.1|2373043_2373382_-|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	59.5	2.3e-31
2373551:2373565	attL	CTCAAAATTAACCTA	NA	NA	NA	NA
WP_010894925.1|2373599_2373902_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_010894926.1|2373904_2374306_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_010894927.1|2374374_2374962_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_010894928.1|2374958_2375501_-	hypothetical protein	NA	D5LGZ6	Escherichia_phage	42.9	2.0e-37
WP_010893241.1|2375476_2375998_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	2.8e-12
WP_042462902.1|2375994_2376318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893239.1|2376317_2376578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893238.1|2376595_2378476_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.9	2.1e-166
WP_010893237.1|2378459_2380058_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.3	3.5e-130
WP_010893236.1|2380054_2380603_-	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.0	1.4e-38
WP_042462898.1|2380606_2382559_-|terminase	phage terminase large subunit family protein	terminase	D5LH04	Escherichia_phage	66.6	1.7e-251
WP_042462895.1|2382551_2383091_-	DNA-packaging protein	NA	A0A193GYK5	Enterobacter_phage	61.3	1.1e-46
WP_042462892.1|2383263_2383488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462889.1|2383489_2383951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893232.1|2383940_2384252_-	hypothetical protein	NA	A0A172PZR6	Pseudomonas_phage	43.0	2.0e-18
WP_010893231.1|2384262_2384757_-	lysozyme	NA	I2GUG4	Acinetobacter_phage	50.7	8.5e-27
WP_042463593.1|2384723_2385341_-	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	50.0	2.4e-26
WP_042463422.1|2385831_2388363_-	DNA primase	NA	C8CLH6	Xylella_phage	72.0	0.0e+00
WP_010894930.1|2388465_2389284_-	hypothetical protein	NA	C8CLH5	Xylella_phage	59.7	5.7e-28
WP_155115001.1|2389782_2389944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023907050.1|2390071_2390317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894932.1|2390377_2390626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894933.1|2390622_2390811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051372715.1|2390864_2391089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907048.1|2391190_2391496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031338060.1|2391492_2391693_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_010894935.1|2391766_2392537_+	helix-turn-helix transcriptional regulator	NA	C8CLH0	Xylella_phage	34.5	6.0e-27
WP_010894936.1|2392705_2393245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052262873.1|2393281_2393593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894938.1|2393780_2394236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894939.1|2394341_2394731_+	hypothetical protein	NA	C8CLG9	Xylella_phage	37.5	1.0e-06
WP_010894940.1|2394727_2395129_+	hypothetical protein	NA	C8CLG8	Xylella_phage	70.0	3.7e-12
WP_042463427.1|2395188_2395671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907733.1|2395970_2396162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894942.1|2396185_2396377_+	hypothetical protein	NA	C8CLG6	Xylella_phage	75.0	3.1e-17
WP_010894943.1|2396408_2396606_+	hypothetical protein	NA	C8CLG5	Xylella_phage	90.5	2.3e-23
WP_010894945.1|2397097_2398375_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	84.2	2.6e-205
WP_010894946.1|2398374_2398941_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	96.3	2.7e-101
WP_010894947.1|2399009_2400524_+	hypothetical protein	NA	C8CLG1	Xylella_phage	68.0	9.2e-181
WP_010894948.1|2400525_2402706_+	DNA polymerase	NA	C8CLG0	Xylella_phage	91.2	0.0e+00
WP_010893206.1|2402702_2402981_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010894949.1|2402982_2403378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894950.1|2403462_2404881_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	92.4	5.4e-260
WP_023907056.1|2405034_2405283_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	80.5	3.0e-33
WP_010894952.1|2405282_2406302_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	87.6	1.1e-169
2407240:2407254	attR	CTCAAAATTAACCTA	NA	NA	NA	NA
