assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001456135.1_ASM145613v1	NZ_CP013322	Klebsiella pneumoniae strain CAV1193 chromosome, complete genome	1	1404214-1404308	1	CRISPRCasFinder	no		RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|57aa|up_8|NZ_CP013322.1_1391260_1391431_+,NA	NA|282aa|up_9|NZ_CP013322.1_1390429_1391275_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|57aa|up_8|NZ_CP013322.1_1391260_1391431_+	NA	NA|570aa|up_7|NZ_CP013322.1_1391612_1393322_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP013322.1_1393332_1394835_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP013322.1_1394972_1395668_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP013322.1_1395843_1398201_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP013322.1_1398388_1401295_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP013322.1_1401307_1401967_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP013322.1_1402041_1402581_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP013322.1_1402760_1404125_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP013322.1_1404449_1406075_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP013322.1_1406064_1406763_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP013322.1_1406795_1407623_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP013322.1_1407866_1410215_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP013322.1_1410269_1411556_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP013322.1_1411561_1412551_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP013322.1_1412547_1413369_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP013322.1_1413371_1413749_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP013322.1_1413753_1414602_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP013322.1_1414857_1415337_-	PRK10769, folA, type 3 dihydrofolate reductase
GCF_001456135.1_ASM145613v1	NZ_CP013322	Klebsiella pneumoniae strain CAV1193 chromosome, complete genome	2	3312120-3314707	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	3	5	3312454-3312485|3314589-3314620|3314589-3314620|3314588-3314620|3314588-3314620	NZ_CP013322.1_881232-881201|NZ_CP013323.1_64282-64251|NZ_CP013323.1_96692-96661|NZ_CP013323.1_64283-64251|NZ_CP013323.1_96693-96661	I-E:I-E:I-E	42,42,33	42	TypeI-E	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|571aa|up_9|NZ_CP013322.1_3300827_3302540_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP013322.1_3302638_3303373_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|888aa|up_7|NZ_CP013322.1_3303579_3306243_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP013322.1_3306254_3307811_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_5|NZ_CP013322.1_3307807_3308350_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP013322.1_3308368_3309424_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP013322.1_3309434_3310181_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP013322.1_3310162_3310813_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP013322.1_3310809_3311730_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP013322.1_3311729_3312023_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|396aa|down_0|NZ_CP013322.1_3316796_3317984_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_1|NZ_CP013322.1_3318019_3319075_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|469aa|down_2|NZ_CP013322.1_3319321_3320728_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_3|NZ_CP013322.1_3320737_3321646_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_4|NZ_CP013322.1_3321655_3323083_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_5|NZ_CP013322.1_3323082_3323688_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_6|NZ_CP013322.1_3323738_3324065_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_7|NZ_CP013322.1_3324205_3324523_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_8|NZ_CP013322.1_3324542_3325253_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_9|NZ_CP013322.1_3325252_3325732_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
GCF_001456135.1_ASM145613v1	NZ_CP013322	Klebsiella pneumoniae strain CAV1193 chromosome, complete genome	3	5254632-5254726	3	CRISPRCasFinder	no		RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCACTACCCCCTGGTGAATCTCCTGCAC	29	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DinG,WYL,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|68aa|up_9|NZ_CP013322.1_5246301_5246505_-,NA|117aa|up_8|NZ_CP013322.1_5247020_5247371_-,NA|362aa|up_5|NZ_CP013322.1_5249070_5250156_+,NA|103aa|down_3|NZ_CP013322.1_5256470_5256779_+,NA|65aa|down_4|NZ_CP013322.1_5256768_5256963_+,NA|75aa|down_5|NZ_CP013322.1_5257133_5257358_+,NA|54aa|down_6|NZ_CP013322.1_5257562_5257724_+,NA|85aa|down_7|NZ_CP013322.1_5257716_5257971_+,NA|41aa|down_8|NZ_CP013322.1_5258038_5258161_+,NA|147aa|down_9|NZ_CP013322.1_5258157_5258598_+	NA|68aa|up_9|NZ_CP013322.1_5246301_5246505_-	NA	NA|117aa|up_8|NZ_CP013322.1_5247020_5247371_-	NA	NA|166aa|up_7|NZ_CP013322.1_5247576_5248074_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|90aa|up_6|NZ_CP013322.1_5248051_5248321_-	pfam16080, Phage_holin_2_3, Bacteriophage holin family HP1	NA|362aa|up_5|NZ_CP013322.1_5249070_5250156_+	NA	NA|331aa|up_4|NZ_CP013322.1_5250155_5251148_+	smart00954, RelA_SpoT, Region found in RelA / SpoT proteins	NA|116aa|up_3|NZ_CP013322.1_5251187_5251535_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|127aa|up_2|NZ_CP013322.1_5251527_5251908_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|460aa|up_1|NZ_CP013322.1_5251894_5253274_-	TIGR00665, DnaB, replicative DNA helicase	NA|293aa|up_0|NZ_CP013322.1_5253270_5254149_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|63aa|down_0|NZ_CP013322.1_5254987_5255176_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|76aa|down_1|NZ_CP013322.1_5255251_5255479_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|236aa|down_2|NZ_CP013322.1_5255603_5256311_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|103aa|down_3|NZ_CP013322.1_5256470_5256779_+	NA	NA|65aa|down_4|NZ_CP013322.1_5256768_5256963_+	NA	NA|75aa|down_5|NZ_CP013322.1_5257133_5257358_+	NA	NA|54aa|down_6|NZ_CP013322.1_5257562_5257724_+	NA	NA|85aa|down_7|NZ_CP013322.1_5257716_5257971_+	NA	NA|41aa|down_8|NZ_CP013322.1_5258038_5258161_+	NA	NA|147aa|down_9|NZ_CP013322.1_5258157_5258598_+	NA
