The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	995005	1026204	4782363	tail,lysis,capsid	Escherichia_phage(36.36%)	24	NA	NA
WP_001519506.1|995005_1003279_-	hypothetical protein	NA	Q08J70	Stx2-converting_phage	60.9	0.0e+00
WP_000348584.1|1003311_1004640_-	hypothetical protein	NA	A0A0P0ZD72	Stx2-converting_phage	32.2	8.1e-40
WP_000540389.1|1004650_1004902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000094760.1|1004914_1005310_-	hypothetical protein	NA	G9L6M0	Escherichia_phage	51.2	6.4e-25
WP_000514646.1|1005322_1005973_-	hypothetical protein	NA	Q08J74	Stx2-converting_phage	55.3	2.4e-53
WP_001518170.1|1006032_1006404_-	hypothetical protein	NA	A0A088CC37	Shigella_phage	67.2	1.3e-43
WP_000038922.1|1006406_1007909_-	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	57.2	2.1e-116
WP_001110888.1|1007905_1009537_-	hypothetical protein	NA	A0A088CBK0	Shigella_phage	61.1	8.3e-196
WP_000086102.1|1011434_1011809_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	40.7	1.5e-15
WP_001518899.1|1012129_1012735_-	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	46.7	2.2e-45
WP_001021563.1|1012890_1013469_-	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	48.1	6.2e-45
WP_000026023.1|1013478_1015200_-|tail	tail fiber protein	tail	A0A088CC33	Shigella_phage	70.6	1.7e-37
WP_000214210.1|1015196_1015850_-	hypothetical protein	NA	Q08J85	Stx2-converting_phage	66.0	1.5e-79
WP_000254571.1|1015849_1016413_-	hypothetical protein	NA	A0A2R2Z349	Escherichia_phage	54.0	1.2e-48
WP_001290740.1|1016396_1016849_-	hypothetical protein	NA	A0A2R2Z354	Escherichia_phage	59.2	2.9e-34
WP_000918567.1|1016905_1017319_-	hypothetical protein	NA	E7DYW8	Enterobacteria_phage	59.7	6.9e-30
WP_000104480.1|1017380_1018595_-|capsid	N4-gp56 family major capsid protein	capsid	A0A2L1IV46	Escherichia_phage	77.5	7.3e-189
WP_001808184.1|1018648_1019635_-	hypothetical protein	NA	A0A0P0ZGF7	Escherichia_phage	50.6	8.0e-77
WP_001091103.1|1019788_1021936_-	hypothetical protein	NA	V5URY3	Shigella_phage	81.6	8.1e-308
WP_000624498.1|1021935_1023648_-	hypothetical protein	NA	A0A2R2Z350	Escherichia_phage	85.9	7.2e-291
WP_001118121.1|1023628_1024423_-	hypothetical protein	NA	A0A2L1IV66	Escherichia_phage	48.3	1.1e-31
WP_001114699.1|1024493_1024676_-	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_086016671.1|1024892_1025348_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.1	1.8e-55
WP_001208108.1|1025664_1026204_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	70.6	3.1e-75
>prophage 2
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	1030654	1048098	4782363	integrase	Escherichia_phage(33.33%)	27	1042946:1042959	1046243:1046256
WP_001204682.1|1030654_1031017_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	80.8	1.3e-53
WP_000861019.1|1031026_1031320_-	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	78.3	2.3e-35
WP_000940754.1|1031507_1032107_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.4	2.3e-95
WP_024133159.1|1032170_1032476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001597144.1|1032668_1032824_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	84.3	1.2e-14
WP_000687974.1|1033027_1033300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000089418.1|1033296_1033692_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	38.5	3.4e-18
WP_157872077.1|1033704_1034247_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.1e-67
WP_000729545.1|1034158_1035166_-	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	68.7	9.6e-126
WP_001518750.1|1035212_1035707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033910.1|1035693_1035948_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
WP_001574209.1|1036046_1036445_+	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
WP_000402504.1|1036745_1036970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000613374.1|1037389_1037674_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_000799629.1|1037748_1038084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023725.1|1038224_1041239_+	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	47.2	1.0e-223
WP_000107768.1|1041251_1042346_+	recombinase RecT	NA	H6WRX0	Salmonella_phage	50.9	2.2e-91
WP_001033920.1|1042381_1042702_+	hypothetical protein	NA	A0A0U2QV73	Escherichia_phage	62.6	5.5e-35
WP_000066251.1|1042694_1043027_+	hypothetical protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
1042946:1042959	attL	GCCGAACAGCAAGT	NA	NA	NA	NA
WP_000276802.1|1043637_1043817_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	62.1	4.3e-13
WP_001518052.1|1044107_1044332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031617245.1|1044403_1044676_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	39.7	4.0e-10
WP_000078708.1|1044656_1045736_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	54.6	2.2e-104
WP_000722368.1|1046109_1046463_-	YebY family protein	NA	NA	NA	NA	NA
1046243:1046256	attR	ACTTGCTGTTCGGC	NA	NA	NA	NA
WP_000979700.1|1046479_1047355_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168398.1|1047355_1047730_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|1047867_1048098_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 3
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	1150752	1158014	4782363		Morganella_phage(33.33%)	8	NA	NA
WP_001157301.1|1150752_1152183_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377048.1|1152256_1152952_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.1e-07
WP_000107443.1|1153031_1153343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080672.1|1153993_1155205_+	porin	NA	Q1MVN1	Enterobacteria_phage	55.5	2.4e-107
WP_024131109.1|1155466_1155655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|1155665_1155878_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457660.1|1156323_1157592_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.9	9.3e-227
WP_000394197.1|1157594_1158014_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 4
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	1257584	1268091	4782363		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126351.1|1257584_1258898_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
WP_000565902.1|1258924_1260004_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
WP_000648783.1|1260008_1260782_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018224.1|1260797_1261772_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973713.1|1261777_1262329_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	7.7e-53
WP_022630115.1|1262329_1263208_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
WP_001023659.1|1263255_1264155_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000697844.1|1264154_1265240_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	9.4e-103
WP_000981469.1|1265616_1266510_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001144953.1|1266687_1268091_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
>prophage 5
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	1347035	1356206	4782363	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195342.1|1347035_1349069_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|1349309_1349768_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001265352.1|1349939_1350470_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|1350526_1350994_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|1351040_1351760_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|1351756_1353442_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|1353664_1354396_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|1354455_1354563_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|1354543_1355275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|1355258_1356206_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 6
NZ_CP022500	Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505 chromosome, complete genome	4782363	3410994	3430839	4782363	tail,plate	Burkholderia_phage(40.0%)	24	NA	NA
WP_000587745.1|3410994_3411723_-	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
WP_000084332.1|3412460_3412916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000368190.1|3412985_3414692_-|tail	tail fiber protein	tail	A0A0M3ULH6	Salmonella_phage	40.2	2.4e-52
WP_000359503.1|3414694_3415327_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951742.1|3415319_3416435_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.7	1.8e-101
WP_001093501.1|3416425_3416785_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_058343263.1|3416948_3418496_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.7	1.6e-47
WP_000703631.1|3418495_3419425_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.4	1.0e-150
WP_000593184.1|3419421_3419784_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000679394.1|3420110_3420833_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000818148.1|3420842_3421886_-	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	6.5e-77
WP_001269714.1|3421873_3422083_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	3.7e-16
WP_000271419.1|3422082_3423036_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262493.1|3423035_3425390_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	8.1e-67
WP_001185654.1|3425486_3425615_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003640.1|3425574_3425892_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|3425943_3426468_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729855.1|3426467_3427895_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.8	7.3e-196
WP_000875314.1|3427884_3428082_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449438.1|3428078_3428534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|3428692_3429007_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270432.1|3429019_3429625_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.1	3.2e-60
WP_001226439.1|3429627_3429915_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|3430491_3430839_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
