assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001446255.1_ASM144625v1	NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	1	156629-156997	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,casR	Orphan	CGATGACCCGTGGAATCAACCGCA	24	0	0	NA	NA	NA	6	6	Orphan	cas3,WYL,DEDDh,casR	NA|201aa|up_5|NZ_CP011964.1_150179_150782_+,NA|99aa|down_2|NZ_CP011964.1_159367_159664_+,NA|207aa|down_7|NZ_CP011964.1_164265_164886_+	NA|242aa|up_9|NZ_CP011964.1_146554_147280_+	PRK10847, PRK10847, DedA family protein	NA|317aa|up_8|NZ_CP011964.1_147502_148453_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|356aa|up_7|NZ_CP011964.1_148459_149527_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|219aa|up_6|NZ_CP011964.1_149526_150183_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|201aa|up_5|NZ_CP011964.1_150179_150782_+	NA	NA|96aa|up_4|NZ_CP011964.1_151066_151354_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|126aa|up_3|NZ_CP011964.1_151359_151737_+	pfam07811, TadE, TadE-like protein	NA|126aa|up_2|NZ_CP011964.1_151786_152164_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|377aa|up_1|NZ_CP011964.1_152212_153343_+	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|200aa|up_0|NZ_CP011964.1_153540_154140_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|201aa|down_0|NZ_CP011964.1_157272_157875_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|378aa|down_1|NZ_CP011964.1_157871_159005_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|99aa|down_2|NZ_CP011964.1_159367_159664_+	NA	NA|428aa|down_3|NZ_CP011964.1_159891_161175_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|255aa|down_4|NZ_CP011964.1_161535_162300_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|189aa|down_5|NZ_CP011964.1_162355_162922_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|365aa|down_6|NZ_CP011964.1_163003_164098_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|207aa|down_7|NZ_CP011964.1_164265_164886_+	NA	NA|489aa|down_8|NZ_CP011964.1_165220_166687_+	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|639aa|down_9|NZ_CP011964.1_167178_169095_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated
GCF_001446255.1_ASM144625v1	NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	2	394168-394292	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,casR	Orphan	CTGGCGACTGCCCACGGCGCGAGTTCTGATTCG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,casR	NA|209aa|up_8|NZ_CP011964.1_382131_382758_-,NA|525aa|down_9|NZ_CP011964.1_407514_409089_+	NA|143aa|up_9|NZ_CP011964.1_381619_382048_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|209aa|up_8|NZ_CP011964.1_382131_382758_-	NA	NA|441aa|up_7|NZ_CP011964.1_382988_384311_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|255aa|up_6|NZ_CP011964.1_384605_385370_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|253aa|up_5|NZ_CP011964.1_385413_386172_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|423aa|up_4|NZ_CP011964.1_386618_387887_+	pfam02388, FemAB, FemAB family	NA|437aa|up_3|NZ_CP011964.1_387960_389271_+	pfam02388, FemAB, FemAB family	NA|427aa|up_2|NZ_CP011964.1_389320_390601_+	pfam02388, FemAB, FemAB family	NA|334aa|up_1|NZ_CP011964.1_390683_391685_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|566aa|up_0|NZ_CP011964.1_392406_394104_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|597aa|down_0|NZ_CP011964.1_395936_397727_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|122aa|down_1|NZ_CP011964.1_398470_398836_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|280aa|down_2|NZ_CP011964.1_399002_399842_+	TIGR02227, Inactive_signal_peptidase_IA	NA|276aa|down_3|NZ_CP011964.1_399943_400771_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|372aa|down_4|NZ_CP011964.1_400897_402013_+	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|549aa|down_5|NZ_CP011964.1_402167_403814_+	cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases	NA|231aa|down_6|NZ_CP011964.1_403898_404591_+	PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated	NA|506aa|down_7|NZ_CP011964.1_404822_406340_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|239aa|down_8|NZ_CP011964.1_406523_407240_-	pfam07722, Peptidase_C26, Peptidase C26	NA|525aa|down_9|NZ_CP011964.1_407514_409089_+	NA
GCF_001446255.1_ASM144625v1	NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	3	1378065-1378145	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,casR	NA|107aa|up_5|NZ_CP011964.1_1368421_1368742_-,NA|284aa|down_0|NZ_CP011964.1_1379045_1379897_+	NA|170aa|up_9|NZ_CP011964.1_1364298_1364808_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_CP011964.1_1364847_1365906_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_CP011964.1_1366130_1367087_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_CP011964.1_1367211_1368156_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_CP011964.1_1368421_1368742_-	NA	NA|263aa|up_4|NZ_CP011964.1_1368741_1369530_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_CP011964.1_1369668_1371222_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_CP011964.1_1371343_1372339_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_CP011964.1_1372457_1376135_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|532aa|up_0|NZ_CP011964.1_1376195_1377791_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NZ_CP011964.1_1379045_1379897_+	NA	NA|532aa|down_1|NZ_CP011964.1_1380200_1381796_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_CP011964.1_1381844_1382366_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_CP011964.1_1382415_1384125_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_CP011964.1_1384128_1385298_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_CP011964.1_1385299_1386391_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NZ_CP011964.1_1386556_1388191_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|426aa|down_7|NZ_CP011964.1_1388470_1389748_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|NZ_CP011964.1_1389925_1390738_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|NZ_CP011964.1_1391075_1392200_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_001446255.1_ASM144625v1	NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	4	1594367-1594498	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,casR	Orphan	GCGACACATTCCCGGGAACGCGTCGC	26	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,DEDDh,casR	NA|277aa|up_7|NZ_CP011964.1_1579057_1579888_+,NA|754aa|up_3|NZ_CP011964.1_1588000_1590262_+,NA|140aa|down_8|NZ_CP011964.1_1602920_1603340_+	NA|272aa|up_9|NZ_CP011964.1_1577624_1578440_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|71aa|up_8|NZ_CP011964.1_1578577_1578790_+	cd06290, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|277aa|up_7|NZ_CP011964.1_1579057_1579888_+	NA	NA|372aa|up_6|NZ_CP011964.1_1580161_1581277_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|921aa|up_5|NZ_CP011964.1_1581452_1584215_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|1208aa|up_4|NZ_CP011964.1_1584279_1587903_-	sd00006, TPR, Tetratricopeptide repeat	NA|754aa|up_3|NZ_CP011964.1_1588000_1590262_+	NA	NA|590aa|up_2|NZ_CP011964.1_1590396_1592166_+	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)	NA|262aa|up_1|NZ_CP011964.1_1592222_1593008_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|422aa|up_0|NZ_CP011964.1_1593055_1594321_-	cd00609, AAT_like, Aspartate aminotransferase family	NA|256aa|down_0|NZ_CP011964.1_1594591_1595359_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|262aa|down_1|NZ_CP011964.1_1595604_1596390_+	pfam14512, TM1586_NiRdase, Putative TM nitroreductase	NA|341aa|down_2|NZ_CP011964.1_1596431_1597454_-	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|218aa|down_3|NZ_CP011964.1_1597696_1598350_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|811aa|down_4|NZ_CP011964.1_1598480_1600913_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|102aa|down_5|NZ_CP011964.1_1600983_1601289_+	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	NA|122aa|down_6|NZ_CP011964.1_1601387_1601753_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|231aa|down_7|NZ_CP011964.1_1601802_1602495_+	pfam05154, TM2, TM2 domain	NA|140aa|down_8|NZ_CP011964.1_1602920_1603340_+	NA	NA|329aa|down_9|NZ_CP011964.1_1603464_1604451_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase
GCF_001446255.1_ASM144625v1	NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	5	2083529-2083602	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,casR	Orphan	AAATGACGAACCGGGACAGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,casR	NA|59aa|up_0|NZ_CP011964.1_2082509_2082686_+,NA	NA|378aa|up_9|NZ_CP011964.1_2070082_2071216_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|up_8|NZ_CP011964.1_2071216_2072908_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|83aa|up_7|NZ_CP011964.1_2072976_2073225_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_6|NZ_CP011964.1_2073247_2073556_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1023aa|up_5|NZ_CP011964.1_2073707_2076776_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|402aa|up_4|NZ_CP011964.1_2077088_2078294_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|315aa|up_3|NZ_CP011964.1_2078400_2079345_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|483aa|up_2|NZ_CP011964.1_2079520_2080969_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|365aa|up_1|NZ_CP011964.1_2080965_2082060_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_CP011964.1_2082509_2082686_+	NA	NA|485aa|down_0|NZ_CP011964.1_2083681_2085136_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_CP011964.1_2085272_2086385_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_CP011964.1_2086479_2087796_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_CP011964.1_2087956_2089549_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NZ_CP011964.1_2089551_2091414_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|222aa|down_5|NZ_CP011964.1_2091627_2092293_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|422aa|down_6|NZ_CP011964.1_2092301_2093567_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|311aa|down_7|NZ_CP011964.1_2093653_2094586_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_8|NZ_CP011964.1_2094679_2095933_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_9|NZ_CP011964.1_2095981_2097307_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
