assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001444465.1_ASM144446v1	NZ_CP012029	Leptospira borgpetersenii serovar Ballum strain 56604 chromosome 1, complete sequence	1	412488-412698	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	csa3	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	Type I-A	CCGGTTCAACCCCACGCATGTGGGGAAAAG,CCGGTTCAACCCCACGCATGTGGGGAAAAGN,CGGTTCAACCCCACGCATGTGGGGAAAAG	30,31,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	3,3,3	3	Orphan	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	NA|356aa|up_6|NZ_CP012029.1_403329_404397_+,NA|69aa|up_0|NZ_CP012029.1_410926_411133_+,NA|249aa|down_0|NZ_CP012029.1_413385_414132_-,NA|294aa|down_3|NZ_CP012029.1_418056_418938_-,NA|312aa|down_5|NZ_CP012029.1_423818_424754_-,NA|215aa|down_7|NZ_CP012029.1_427062_427707_-	NA|292aa|up_9|NZ_CP012029.1_398597_399473_+	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|675aa|up_8|NZ_CP012029.1_399478_401503_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|601aa|up_7|NZ_CP012029.1_401516_403319_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|up_6|NZ_CP012029.1_403329_404397_+	NA	NA|434aa|up_5|NZ_CP012029.1_405142_406444_+	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|260aa|up_4|NZ_CP012029.1_406444_407224_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|272aa|up_3|NZ_CP012029.1_407520_408336_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	csa3|113aa|up_2|NZ_CP012029.1_408424_408763_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|136aa|up_1|NZ_CP012029.1_408814_409222_+	cd08901, SRPBCC_CalC_Aha1-like_8, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|69aa|up_0|NZ_CP012029.1_410926_411133_+	NA	NA|249aa|down_0|NZ_CP012029.1_413385_414132_-	NA	NA|405aa|down_1|NZ_CP012029.1_415106_416321_+	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|286aa|down_2|NZ_CP012029.1_417047_417905_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|294aa|down_3|NZ_CP012029.1_418056_418938_-	NA	NA|607aa|down_4|NZ_CP012029.1_419401_421222_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|312aa|down_5|NZ_CP012029.1_423818_424754_-	NA	NA|362aa|down_6|NZ_CP012029.1_425210_426296_+	pfam07705, CARDB, CARDB	NA|215aa|down_7|NZ_CP012029.1_427062_427707_-	NA	NA|198aa|down_8|NZ_CP012029.1_427703_428297_-	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|450aa|down_9|NZ_CP012029.1_428379_429729_+	PRK14332, PRK14332, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
GCF_001444465.1_ASM144446v1	NZ_CP012029	Leptospira borgpetersenii serovar Ballum strain 56604 chromosome 1, complete sequence	2	703831-703920	2	CRISPRCasFinder	no		csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	Orphan	AAAGAGTCGTCGCTTCGCTTTGAGTAATT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	NA|73aa|up_7|NZ_CP012029.1_692705_692924_+,NA|67aa|up_1|NZ_CP012029.1_701696_701897_-,NA|131aa|down_2|NZ_CP012029.1_709214_709607_-	NA|412aa|up_9|NZ_CP012029.1_690515_691751_-	pfam13535, ATP-grasp_4, ATP-grasp domain	NA|166aa|up_8|NZ_CP012029.1_692209_692707_-	pfam07617, DUF1579, Protein of unknown function (DUF1579)	NA|73aa|up_7|NZ_CP012029.1_692705_692924_+	NA	NA|99aa|up_6|NZ_CP012029.1_694328_694625_+	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|898aa|up_5|NZ_CP012029.1_694726_697420_-	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|223aa|up_4|NZ_CP012029.1_698443_699112_-	pfam04402, SIMPL, Protein of unknown function (DUF541)	NA|547aa|up_3|NZ_CP012029.1_699330_700971_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|97aa|up_2|NZ_CP012029.1_700984_701275_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|67aa|up_1|NZ_CP012029.1_701696_701897_-	NA	NA|507aa|up_0|NZ_CP012029.1_701895_703416_+	TIGR00591, Deoxyribodipyrimidine_photo-lyase, photolyase PhrII	NA|479aa|down_0|NZ_CP012029.1_703940_705377_-	cd07302, CHD, cyclase homology domain	NA|754aa|down_1|NZ_CP012029.1_706227_708489_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|131aa|down_2|NZ_CP012029.1_709214_709607_-	NA	NA|216aa|down_3|NZ_CP012029.1_709620_710268_-	pfam07956, DUF1690, Protein of Unknown function (DUF1690)	NA|189aa|down_4|NZ_CP012029.1_710426_710993_-	TIGR02473, conserved_hypothetical_protein, flagellar export protein FliJ	NA|455aa|down_5|NZ_CP012029.1_710996_712361_-	TIGR03497, FliI_clade2, flagellar protein export ATPase FliI	NA|308aa|down_6|NZ_CP012029.1_712666_713590_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|323aa|down_7|NZ_CP012029.1_713593_714562_-	COG1536, FliG, Flagellar motor switch protein [Cell motility and secretion]	NA|568aa|down_8|NZ_CP012029.1_714561_716265_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|160aa|down_9|NZ_CP012029.1_716769_717249_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)
GCF_001444465.1_ASM144446v1	NZ_CP012029	Leptospira borgpetersenii serovar Ballum strain 56604 chromosome 1, complete sequence	3	2938442-2938534	3	CRISPRCasFinder	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	Type I-E	AGCCTATTCCCCACATGCGTGGGGTTGAACC	31	0	0	NA	NA	I-E,II-B	1	1	TypeI-E	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	NA|86aa|up_4|NZ_CP012029.1_2935413_2935671_-,NA|182aa|up_3|NZ_CP012029.1_2935690_2936236_-,NA|69aa|down_2|NZ_CP012029.1_2941211_2941418_-,NA|132aa|down_9|NZ_CP012029.1_2950922_2951318_-	cas3|932aa|up_9|NZ_CP012029.1_2927562_2930358_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|179aa|up_8|NZ_CP012029.1_2931975_2932512_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|358aa|up_7|NZ_CP012029.1_2932508_2933582_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|248aa|up_6|NZ_CP012029.1_2933582_2934326_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|267aa|up_5|NZ_CP012029.1_2934596_2935397_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|86aa|up_4|NZ_CP012029.1_2935413_2935671_-	NA	NA|182aa|up_3|NZ_CP012029.1_2935690_2936236_-	NA	NA|115aa|up_2|NZ_CP012029.1_2936318_2936663_-	pfam06127, DUF962, Protein of unknown function (DUF962)	cas1|295aa|up_1|NZ_CP012029.1_2937166_2938051_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|140aa|up_0|NZ_CP012029.1_2937983_2938403_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|384aa|down_0|NZ_CP012029.1_2938631_2939783_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|down_1|NZ_CP012029.1_2940073_2940394_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|69aa|down_2|NZ_CP012029.1_2941211_2941418_-	NA	NA|455aa|down_3|NZ_CP012029.1_2941535_2942900_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|345aa|down_4|NZ_CP012029.1_2942896_2943931_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1058aa|down_5|NZ_CP012029.1_2943934_2947108_+	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|219aa|down_6|NZ_CP012029.1_2947207_2947864_+	PRK11752, PRK11752, putative S-transferase; Provisional	NA|711aa|down_7|NZ_CP012029.1_2947865_2949998_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|245aa|down_8|NZ_CP012029.1_2950181_2950916_-	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|132aa|down_9|NZ_CP012029.1_2950922_2951318_-	NA
GCF_001444465.1_ASM144446v1	NZ_CP012030	Leptospira borgpetersenii serovar Ballum strain 56604 chromosome 2, complete sequence	1	332906-333003	1	CRISPRCasFinder	no		csa3	Orphan	TTTACCGTATTAGCGGTTTTTAAATCCTC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,Cas9_archaeal,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL	NA|65aa|up_9|NZ_CP012030.1_319951_320146_+,NA|304aa|up_5|NZ_CP012030.1_324332_325244_+,NA|267aa|up_4|NZ_CP012030.1_325240_326041_+,NA|222aa|up_3|NZ_CP012030.1_326303_326969_-,NA|112aa|down_2|NZ_CP012030.1_335638_335974_+,NA|128aa|down_8|NZ_CP012030.1_339463_339847_+,NA|86aa|down_9|NZ_CP012030.1_339843_340101_+	NA|65aa|up_9|NZ_CP012030.1_319951_320146_+	NA	NA|163aa|up_8|NZ_CP012030.1_321386_321875_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|380aa|up_7|NZ_CP012030.1_321993_323133_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|377aa|up_6|NZ_CP012030.1_323182_324313_+	smart00563, PlsC, Phosphate acyltransferases	NA|304aa|up_5|NZ_CP012030.1_324332_325244_+	NA	NA|267aa|up_4|NZ_CP012030.1_325240_326041_+	NA	NA|222aa|up_3|NZ_CP012030.1_326303_326969_-	NA	NA|772aa|up_2|NZ_CP012030.1_326965_329281_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|198aa|up_1|NZ_CP012030.1_329384_329978_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|221aa|up_0|NZ_CP012030.1_330246_330909_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|379aa|down_0|NZ_CP012030.1_333446_334583_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|316aa|down_1|NZ_CP012030.1_334643_335591_-	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|112aa|down_2|NZ_CP012030.1_335638_335974_+	NA	NA|136aa|down_3|NZ_CP012030.1_335986_336394_-	pfam14106, DUF4279, Domain of unknown function (DUF4279)	NA|242aa|down_4|NZ_CP012030.1_336621_337347_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|103aa|down_5|NZ_CP012030.1_337916_338225_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|138aa|down_6|NZ_CP012030.1_338504_338918_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|93aa|down_7|NZ_CP012030.1_339167_339446_+	pfam05957, DUF883, Bacterial protein of unknown function (DUF883)	NA|128aa|down_8|NZ_CP012030.1_339463_339847_+	NA	NA|86aa|down_9|NZ_CP012030.1_339843_340101_+	NA
