assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	1	305580-305719	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TATGTTGGGGCCCACCCCAACTTGCA	26	2	36	305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305606-305636|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693|305663-305693	NZ_CP013137.1_575361-575331|NZ_CP013137.1_661360-661330|NZ_CP013137.1_1599549-1599519|NZ_CP013137.1_2441474-2441504|NZ_CP013137.1_2441530-2441560|NZ_CP013137.1_1599604-1599574|NZ_CP013137.1_1823619-1823649|NZ_CP013137.1_661185-661155|NZ_CP013137.1_1134605-1134635|NZ_CP013137.1_1823445-1823475|NZ_CP013137.1_1959757-1959727|NZ_CP013137.1_2537700-2537730|NZ_CP013137.1_2796064-2796034|NZ_CP013137.1_213868-213838|NZ_CP013137.1_2630616-2630586|NZ_CP013137.1_2630671-2630641|NZ_CP013137.1_261454-261484|NZ_CP013137.1_571220-571190|NZ_CP013137.1_1256759-1256729|NZ_CP013137.1_88197-88167|NZ_CP013137.1_88255-88225|NZ_CP013137.1_376417-376447|NZ_CP013137.1_474241-474271|NZ_CP013137.1_825620-825650|NZ_CP013137.1_1134719-1134749|NZ_CP013137.1_1134777-1134807|NZ_CP013137.1_1459879-1459909|NZ_CP013137.1_1470383-1470413|NZ_CP013137.1_1823500-1823530|NZ_CP013137.1_1959702-1959672|NZ_CP013137.1_2260640-2260670|NZ_CP013137.1_2294308-2294338|NZ_CP013137.1_2340870-2340900|NZ_CP013137.1_2537758-2537788|NZ_CP013137.1_2537816-2537846|NZ_CP013137.1_2796119-2796089	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP013137.1_298581_299163_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP013137.1_299235_299853_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP013137.1_300009_300504_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP013137.1_300900_301323_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP013137.1_301470_302187_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP013137.1_302269_302809_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP013137.1_302958_303279_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP013137.1_303422_303779_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP013137.1_303936_304317_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP013137.1_304494_305373_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP013137.1_305962_306349_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP013137.1_306341_306638_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP013137.1_306887_307913_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP013137.1_307905_308601_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP013137.1_308618_309440_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP013137.1_310146_310341_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP013137.1_310574_311426_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP013137.1_311753_312515_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP013137.1_312612_313920_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP013137.1_314025_315276_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2	490515-490611	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GCATAAAAGCCCCTAACAACTAAAAGTTGTAAGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP013137.1_490620_490755_-,NA|432aa|down_1|NZ_CP013137.1_490906_492202_+	NA|224aa|up_9|NZ_CP013137.1_478312_478984_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP013137.1_478976_481166_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP013137.1_481144_482629_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP013137.1_482621_483650_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP013137.1_483652_484219_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP013137.1_484233_485712_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP013137.1_485733_486981_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP013137.1_487246_488053_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP013137.1_488045_489446_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP013137.1_489461_490037_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP013137.1_490620_490755_-	NA	NA|432aa|down_1|NZ_CP013137.1_490906_492202_+	NA	NA|391aa|down_2|NZ_CP013137.1_492626_493799_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP013137.1_493852_494395_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP013137.1_494548_494815_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP013137.1_494817_496536_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP013137.1_496772_497006_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP013137.1_497203_498565_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP013137.1_498561_499581_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP013137.1_499713_500376_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	3	650420-650512	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|NZ_CP013137.1_640294_640939_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP013137.1_640945_641587_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP013137.1_641967_642156_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP013137.1_642598_642973_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP013137.1_642987_644634_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP013137.1_644823_646884_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP013137.1_647086_647659_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP013137.1_647663_648650_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP013137.1_648642_649569_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP013137.1_649561_650296_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP013137.1_650601_650835_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP013137.1_650950_651682_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP013137.1_651828_655395_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP013137.1_655394_656645_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP013137.1_656631_656964_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP013137.1_656989_658357_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP013137.1_658698_658974_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP013137.1_659161_659665_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP013137.1_659664_660402_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP013137.1_660504_660855_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	4	1459809-1459891	4	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP013137.1_1454055_1454331_+,NA|129aa|up_1|NZ_CP013137.1_1458313_1458700_-,NA|138aa|down_1|NZ_CP013137.1_1461375_1461789_-,NA|37aa|down_2|NZ_CP013137.1_1461817_1461928_-,NA|31aa|down_6|NZ_CP013137.1_1464933_1465026_-	NA|419aa|up_9|NZ_CP013137.1_1451978_1453235_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP013137.1_1453237_1453438_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP013137.1_1453584_1454049_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP013137.1_1454055_1454331_+	NA	NA|406aa|up_5|NZ_CP013137.1_1454608_1455826_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP013137.1_1455938_1456568_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP013137.1_1456557_1457601_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP013137.1_1457597_1458299_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP013137.1_1458313_1458700_-	NA	NA|253aa|up_0|NZ_CP013137.1_1458916_1459675_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP013137.1_1460200_1461187_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP013137.1_1461375_1461789_-	NA	NA|37aa|down_2|NZ_CP013137.1_1461817_1461928_-	NA	NA|244aa|down_3|NZ_CP013137.1_1462013_1462745_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP013137.1_1462746_1464060_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP013137.1_1464351_1464852_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP013137.1_1464933_1465026_-	NA	DEDDh|185aa|down_7|NZ_CP013137.1_1465242_1465797_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP013137.1_1465863_1466934_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP013137.1_1467179_1467710_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	5	1574190-1574269	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCCCCACCCCAACTTACATTGT	23	1	6	1574213-1574246|1574213-1574246|1574213-1574246|1574213-1574246|1574213-1574246|1574213-1574246	NZ_CP013137.1_261459-261492|NZ_CP013137.1_213863-213830|NZ_CP013137.1_571215-571182|NZ_CP013137.1_2630611-2630578|NZ_CP013137.1_2630666-2630633|NZ_CP013137.1_825625-825658	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|NZ_CP013137.1_1563414_1563579_+,NA|62aa|up_7|NZ_CP013137.1_1563556_1563742_+,NA|61aa|up_6|NZ_CP013137.1_1563941_1564124_+,NA|49aa|up_5|NZ_CP013137.1_1564159_1564306_+,NA|209aa|down_1|NZ_CP013137.1_1576288_1576915_-,NA|60aa|down_2|NZ_CP013137.1_1576911_1577091_-	NA|244aa|up_9|NZ_CP013137.1_1562671_1563403_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|55aa|up_8|NZ_CP013137.1_1563414_1563579_+	NA	NA|62aa|up_7|NZ_CP013137.1_1563556_1563742_+	NA	NA|61aa|up_6|NZ_CP013137.1_1563941_1564124_+	NA	NA|49aa|up_5|NZ_CP013137.1_1564159_1564306_+	NA	NA|342aa|up_4|NZ_CP013137.1_1565023_1566049_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_3|NZ_CP013137.1_1567453_1568470_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_2|NZ_CP013137.1_1568491_1569547_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_1|NZ_CP013137.1_1569982_1571206_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|290aa|up_0|NZ_CP013137.1_1571702_1572572_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|436aa|down_0|NZ_CP013137.1_1574409_1575717_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|209aa|down_1|NZ_CP013137.1_1576288_1576915_-	NA	NA|60aa|down_2|NZ_CP013137.1_1576911_1577091_-	NA	NA|539aa|down_3|NZ_CP013137.1_1577634_1579251_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_4|NZ_CP013137.1_1579326_1579611_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_5|NZ_CP013137.1_1579785_1580529_+	pfam02517, Abi, CAAX protease self-immunity	NA|383aa|down_6|NZ_CP013137.1_1580553_1581702_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|262aa|down_7|NZ_CP013137.1_1582885_1583671_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|27aa|down_8|NZ_CP013137.1_1584267_1584348_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP013137.1_1584638_1585202_+	smart00793, AgrB, Accessory gene regulator B
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	6	1702656-1702741	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP013137.1_1697528_1697759_-,NA|364aa|up_0|NZ_CP013137.1_1701547_1702639_+,NA|35aa|down_0|NZ_CP013137.1_1703144_1703249_-	NA|237aa|up_9|NZ_CP013137.1_1693136_1693847_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP013137.1_1693967_1694411_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP013137.1_1694610_1695024_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP013137.1_1695481_1696855_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP013137.1_1697528_1697759_-	NA	NA|313aa|up_4|NZ_CP013137.1_1697789_1698728_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP013137.1_1699162_1699828_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP013137.1_1699979_1700300_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP013137.1_1700301_1701282_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP013137.1_1701547_1702639_+	NA	NA|35aa|down_0|NZ_CP013137.1_1703144_1703249_-	NA	NA|376aa|down_1|NZ_CP013137.1_1703956_1705084_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|NZ_CP013137.1_1706132_1706990_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP013137.1_1707057_1707840_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP013137.1_1708071_1709877_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP013137.1_1710557_1712096_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP013137.1_1712130_1714263_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP013137.1_1714274_1714709_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP013137.1_1714708_1715815_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2478aa|down_9|NZ_CP013137.1_1716133_1723567_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	7	1973321-1973412	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCGTTCCTTTATTTTCTGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP013137.1_1970989_1971094_+,NA|40aa|down_0|NZ_CP013137.1_1973608_1973728_-	NA|200aa|up_9|NZ_CP013137.1_1964466_1965066_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP013137.1_1965084_1965447_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP013137.1_1965701_1966952_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP013137.1_1967048_1967780_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP013137.1_1967776_1968496_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP013137.1_1968476_1969256_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP013137.1_1969376_1970816_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP013137.1_1970989_1971094_+	NA	NA|229aa|up_1|NZ_CP013137.1_1971247_1971934_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP013137.1_1972259_1973126_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP013137.1_1973608_1973728_-	NA	NA|437aa|down_1|NZ_CP013137.1_1973822_1975133_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP013137.1_1975622_1976552_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP013137.1_1977120_1978068_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP013137.1_1978069_1979047_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP013137.1_1979098_1979566_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP013137.1_1979576_1980269_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP013137.1_1980279_1981395_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP013137.1_1981372_1982380_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP013137.1_1982381_1983740_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	8	2034224-2034319	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACTGTATTCCTCTATACCTGTAATTTT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|250aa|up_9|NZ_CP013137.1_2023778_2024528_+,NA|64aa|down_8|NZ_CP013137.1_2042102_2042294_-,NA|41aa|down_9|NZ_CP013137.1_2042728_2042851_+	NA|250aa|up_9|NZ_CP013137.1_2023778_2024528_+	NA	NA|398aa|up_8|NZ_CP013137.1_2024751_2025945_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NZ_CP013137.1_2025956_2026706_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NZ_CP013137.1_2026698_2027514_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NZ_CP013137.1_2027510_2028380_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NZ_CP013137.1_2028376_2029312_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NZ_CP013137.1_2029324_2030923_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NZ_CP013137.1_2031065_2032367_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NZ_CP013137.1_2032359_2033178_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NZ_CP013137.1_2033188_2034010_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|256aa|down_0|NZ_CP013137.1_2034774_2035542_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|273aa|down_1|NZ_CP013137.1_2035642_2036461_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NZ_CP013137.1_2036695_2038234_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NZ_CP013137.1_2038345_2038768_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|138aa|down_4|NZ_CP013137.1_2039225_2039639_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|142aa|down_5|NZ_CP013137.1_2039890_2040316_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|232aa|down_6|NZ_CP013137.1_2040566_2041262_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|94aa|down_7|NZ_CP013137.1_2041561_2041843_+	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|64aa|down_8|NZ_CP013137.1_2042102_2042294_-	NA	NA|41aa|down_9|NZ_CP013137.1_2042728_2042851_+	NA
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	9	2507425-2507542	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCCAAGTATCATATGGGCTCGCCCAACACAAAACAAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|58aa|down_7|NZ_CP013137.1_2520541_2520715_-,NA|36aa|down_9|NZ_CP013137.1_2522040_2522148_+	NA|323aa|up_9|NZ_CP013137.1_2492133_2493102_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|165aa|up_8|NZ_CP013137.1_2493458_2493953_-	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|460aa|up_7|NZ_CP013137.1_2494185_2495565_+	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter	NA|253aa|up_6|NZ_CP013137.1_2495923_2496682_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|519aa|up_5|NZ_CP013137.1_2496674_2498231_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|323aa|up_4|NZ_CP013137.1_2498227_2499196_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|750aa|up_3|NZ_CP013137.1_2499783_2502033_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|252aa|up_2|NZ_CP013137.1_2502055_2502811_+	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|588aa|up_1|NZ_CP013137.1_2503145_2504909_+	COG4781, COG4781, Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	NA|115aa|up_0|NZ_CP013137.1_2505072_2505417_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|395aa|down_0|NZ_CP013137.1_2508366_2509551_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|754aa|down_1|NZ_CP013137.1_2509580_2511842_-	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|404aa|down_2|NZ_CP013137.1_2512028_2513240_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|502aa|down_3|NZ_CP013137.1_2513351_2514857_-	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|526aa|down_4|NZ_CP013137.1_2514882_2516460_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|381aa|down_5|NZ_CP013137.1_2516900_2518043_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|119aa|down_6|NZ_CP013137.1_2520028_2520385_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|58aa|down_7|NZ_CP013137.1_2520541_2520715_-	NA	NA|382aa|down_8|NZ_CP013137.1_2520740_2521886_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|36aa|down_9|NZ_CP013137.1_2522040_2522148_+	NA
GCF_001444345.1_ASM144434v1	NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	10	2795951-2796040	10	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	AGTTGGGGTGTGGGCCCCAACACAGAAGCTG	31	1	3	2795982-2796009|2795982-2796009|2795982-2796009	NZ_CP013137.1_261363-261336|NZ_CP013137.1_1459958-1459931|NZ_CP013137.1_661162-661189	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA|31aa|down_5|NZ_CP013137.1_2800535_2800628_+	NA|191aa|up_9|NZ_CP013137.1_2783394_2783967_+	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]	cas3|1169aa|up_8|NZ_CP013137.1_2783966_2787473_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|509aa|up_7|NZ_CP013137.1_2787462_2788989_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|398aa|up_6|NZ_CP013137.1_2788988_2790182_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|88aa|up_5|NZ_CP013137.1_2790178_2790442_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|131aa|up_4|NZ_CP013137.1_2790459_2790852_+	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|134aa|up_3|NZ_CP013137.1_2790956_2791358_+	PRK08582, PRK08582, RNA-binding protein S1	NA|432aa|up_2|NZ_CP013137.1_2791537_2792833_+	pfam01171, ATP_bind_3, PP-loop family	NA|180aa|up_1|NZ_CP013137.1_2792837_2793377_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|698aa|up_0|NZ_CP013137.1_2793634_2795728_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|294aa|down_0|NZ_CP013137.1_2796314_2797196_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|311aa|down_1|NZ_CP013137.1_2797374_2798307_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|268aa|down_2|NZ_CP013137.1_2798522_2799326_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|122aa|down_3|NZ_CP013137.1_2799303_2799669_+	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|159aa|down_4|NZ_CP013137.1_2799665_2800142_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|31aa|down_5|NZ_CP013137.1_2800535_2800628_+	NA	NA|496aa|down_6|NZ_CP013137.1_2800680_2802168_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|NA	NA	NA|NA	NA	NA|NA	NA
