assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	1	223992-224078	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CCGTCCCACCGAGTCCCGGACCTCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|859aa|up_7|NZ_CP013126.1_214781_217358_+,NA|39aa|up_6|NZ_CP013126.1_217485_217602_-,NA|88aa|up_5|NZ_CP013126.1_217841_218105_-,NA	NA|368aa|up_9|NZ_CP013126.1_210136_211240_+	cd17267, RMtype1_S_EcoAO83I-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|1053aa|up_8|NZ_CP013126.1_211240_214399_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|859aa|up_7|NZ_CP013126.1_214781_217358_+	NA	NA|39aa|up_6|NZ_CP013126.1_217485_217602_-	NA	NA|88aa|up_5|NZ_CP013126.1_217841_218105_-	NA	NA|289aa|up_4|NZ_CP013126.1_218255_219122_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|236aa|up_3|NZ_CP013126.1_219353_220061_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|270aa|up_2|NZ_CP013126.1_220108_220918_+	pfam00005, ABC_tran, ABC transporter	NA|725aa|up_1|NZ_CP013126.1_220914_223089_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|179aa|up_0|NZ_CP013126.1_223234_223771_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|311aa|down_0|NZ_CP013126.1_224187_225120_-	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|450aa|down_1|NZ_CP013126.1_225409_226759_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|254aa|down_2|NZ_CP013126.1_226755_227517_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|366aa|down_3|NZ_CP013126.1_227650_228748_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|450aa|down_4|NZ_CP013126.1_228812_230162_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|281aa|down_5|NZ_CP013126.1_230291_231134_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|266aa|down_6|NZ_CP013126.1_231133_231931_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|866aa|down_7|NZ_CP013126.1_232048_234646_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|461aa|down_8|NZ_CP013126.1_234780_236163_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|302aa|down_9|NZ_CP013126.1_236195_237101_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	2	371517-371604	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	GGGTCTGTGACCGAGCCCAGCCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA|119aa|down_2|NZ_CP013126.1_375214_375571_-	NA|1110aa|up_9|NZ_CP013126.1_355818_359148_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|273aa|up_8|NZ_CP013126.1_359548_360367_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|268aa|up_7|NZ_CP013126.1_360366_361170_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|553aa|up_6|NZ_CP013126.1_361326_362985_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|260aa|up_5|NZ_CP013126.1_365600_366380_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|209aa|up_4|NZ_CP013126.1_366376_367003_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|611aa|up_3|NZ_CP013126.1_367157_368990_+	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|408aa|up_2|NZ_CP013126.1_369134_370358_+	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|105aa|up_1|NZ_CP013126.1_370394_370709_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|207aa|up_0|NZ_CP013126.1_370767_371388_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|110aa|down_0|NZ_CP013126.1_371631_371961_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|974aa|down_1|NZ_CP013126.1_372060_374982_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|119aa|down_2|NZ_CP013126.1_375214_375571_-	NA	NA|243aa|down_3|NZ_CP013126.1_376526_377255_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|458aa|down_4|NZ_CP013126.1_377244_378618_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|178aa|down_5|NZ_CP013126.1_378648_379182_-	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|362aa|down_6|NZ_CP013126.1_379178_380264_-	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|329aa|down_7|NZ_CP013126.1_380260_381247_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_8|NZ_CP013126.1_381239_382010_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|458aa|down_9|NZ_CP013126.1_382170_383544_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	3	511011-511149	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CACCCGCAACGCGTGGCCACGGGTGCCGACCCACCTCCCACGGACCCGACCG	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|107aa|up_3|NZ_CP013126.1_508739_509060_+,NA|179aa|up_0|NZ_CP013126.1_510362_510899_-,NA|82aa|down_5|NZ_CP013126.1_518213_518459_+,NA|155aa|down_6|NZ_CP013126.1_518443_518908_-,NA|378aa|down_7|NZ_CP013126.1_519009_520143_-	NA|610aa|up_9|NZ_CP013126.1_502845_504675_+	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1	NA|106aa|up_8|NZ_CP013126.1_505163_505481_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|337aa|up_7|NZ_CP013126.1_505522_506533_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|172aa|up_6|NZ_CP013126.1_506571_507087_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|170aa|up_5|NZ_CP013126.1_507101_507611_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|332aa|up_4|NZ_CP013126.1_507720_508716_+	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|107aa|up_3|NZ_CP013126.1_508739_509060_+	NA	NA|210aa|up_2|NZ_CP013126.1_509035_509665_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|206aa|up_1|NZ_CP013126.1_509713_510331_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|179aa|up_0|NZ_CP013126.1_510362_510899_-	NA	NA|392aa|down_0|NZ_CP013126.1_511195_512371_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|849aa|down_1|NZ_CP013126.1_512474_515021_-	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB	NA|205aa|down_2|NZ_CP013126.1_515017_515632_-	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|450aa|down_3|NZ_CP013126.1_515762_517112_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|277aa|down_4|NZ_CP013126.1_517252_518083_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|82aa|down_5|NZ_CP013126.1_518213_518459_+	NA	NA|155aa|down_6|NZ_CP013126.1_518443_518908_-	NA	NA|378aa|down_7|NZ_CP013126.1_519009_520143_-	NA	NA|475aa|down_8|NZ_CP013126.1_520523_521948_+	pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus	NA|746aa|down_9|NZ_CP013126.1_521999_524237_+	NF033189, internalin_A, class 1 internalin InlA
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	4	680900-680977	4	CRISPRCasFinder	no	csa3	DEDDh,csa3,WYL,cas3,DinG	Type I-A	GGCGGCACGCGACCAGCTGACGGCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA|95aa|down_7|NZ_CP013126.1_699553_699838_+,NA|98aa|down_9|NZ_CP013126.1_700143_700437_-	NA|48aa|up_9|NZ_CP013126.1_669226_669370_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	csa3|116aa|up_8|NZ_CP013126.1_669397_669745_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|141aa|up_7|NZ_CP013126.1_669857_670280_+	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|587aa|up_6|NZ_CP013126.1_670308_672069_+	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	NA|270aa|up_5|NZ_CP013126.1_672142_672952_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|556aa|up_4|NZ_CP013126.1_672948_674616_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|162aa|up_3|NZ_CP013126.1_675023_675509_-	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like	NA|396aa|up_2|NZ_CP013126.1_675807_676995_+	TIGR03945, cysteine_synthase, 2,3-diaminopropionate biosynthesis protein SbnA	NA|662aa|up_1|NZ_CP013126.1_677083_679069_+	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	NA|570aa|up_0|NZ_CP013126.1_679080_680790_+	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA	NA|420aa|down_0|NZ_CP013126.1_681151_682411_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|1023aa|down_1|NZ_CP013126.1_682915_685984_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|463aa|down_2|NZ_CP013126.1_686006_687395_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|332aa|down_3|NZ_CP013126.1_687440_688436_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|473aa|down_4|NZ_CP013126.1_689954_691373_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|452aa|down_5|NZ_CP013126.1_691522_692878_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|404aa|down_6|NZ_CP013126.1_693266_694477_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|95aa|down_7|NZ_CP013126.1_699553_699838_+	NA	NA|102aa|down_8|NZ_CP013126.1_699834_700140_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|98aa|down_9|NZ_CP013126.1_700143_700437_-	NA
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	5	889964-890063	5	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	GGGGTCAGCGAGCGCCTGCGCGAGCGCAGGGGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|357aa|up_5|NZ_CP013126.1_880007_881078_+,NA|234aa|down_1|NZ_CP013126.1_891376_892078_+,NA|145aa|down_2|NZ_CP013126.1_892077_892512_+	NA|80aa|up_9|NZ_CP013126.1_876761_877001_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|675aa|up_8|NZ_CP013126.1_877017_879042_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|163aa|up_7|NZ_CP013126.1_878986_879475_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|125aa|up_6|NZ_CP013126.1_879497_879872_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|357aa|up_5|NZ_CP013126.1_880007_881078_+	NA	NA|931aa|up_4|NZ_CP013126.1_881031_883824_+	cd04208, CuRO_2_CuNIR, Cupredoxin domain 2 of Copper-containing nitrite reductase	NA|210aa|up_3|NZ_CP013126.1_883820_884450_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|125aa|up_2|NZ_CP013126.1_885779_886154_+	pfam12911, OppC_N, N-terminal TM domain of oligopeptide transport permease C	NA|572aa|up_1|NZ_CP013126.1_886431_888147_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|573aa|up_0|NZ_CP013126.1_888206_889925_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|377aa|down_0|NZ_CP013126.1_890083_891214_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|234aa|down_1|NZ_CP013126.1_891376_892078_+	NA	NA|145aa|down_2|NZ_CP013126.1_892077_892512_+	NA	NA|211aa|down_3|NZ_CP013126.1_892508_893141_+	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown]	NA|488aa|down_4|NZ_CP013126.1_893302_894766_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|265aa|down_5|NZ_CP013126.1_894922_895717_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|451aa|down_6|NZ_CP013126.1_895713_897066_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|474aa|down_7|NZ_CP013126.1_897189_898611_-	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria	NA|374aa|down_8|NZ_CP013126.1_898864_899986_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|161aa|down_9|NZ_CP013126.1_899988_900471_-	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	6	1480903-1481004	6	CRISPRCasFinder	no	csa3	DEDDh,csa3,WYL,cas3,DinG	Type I-A	GTCTGAGCTGGCATTCATCGGGCACTCCTCG	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|53aa|up_1|NZ_CP013126.1_1477281_1477440_+,NA|228aa|down_0|NZ_CP013126.1_1481057_1481741_+,NA|71aa|down_1|NZ_CP013126.1_1481763_1481976_-,NA|492aa|down_2|NZ_CP013126.1_1482323_1483799_+	NA|241aa|up_9|NZ_CP013126.1_1468185_1468908_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|228aa|up_8|NZ_CP013126.1_1468912_1469596_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|331aa|up_7|NZ_CP013126.1_1469592_1470585_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|303aa|up_6|NZ_CP013126.1_1470577_1471486_-	pfam02424, ApbE, ApbE family	NA|174aa|up_5|NZ_CP013126.1_1471482_1472004_-	COG3976, COG3976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|508aa|up_4|NZ_CP013126.1_1472006_1473530_-	cd06198, FNR_like_3, NAD(P) binding domain of  ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	NA|565aa|up_3|NZ_CP013126.1_1473982_1475677_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|248aa|up_2|NZ_CP013126.1_1476385_1477129_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|53aa|up_1|NZ_CP013126.1_1477281_1477440_+	NA	NA|308aa|up_0|NZ_CP013126.1_1477466_1478390_+	COG1715, Mrr, Restriction endonuclease [Defense mechanisms]	NA|228aa|down_0|NZ_CP013126.1_1481057_1481741_+	NA	NA|71aa|down_1|NZ_CP013126.1_1481763_1481976_-	NA	NA|492aa|down_2|NZ_CP013126.1_1482323_1483799_+	NA	NA|167aa|down_3|NZ_CP013126.1_1483838_1484339_-	cd08901, SRPBCC_CalC_Aha1-like_8, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|108aa|down_4|NZ_CP013126.1_1484355_1484679_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|860aa|down_5|NZ_CP013126.1_1484672_1487252_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|300aa|down_6|NZ_CP013126.1_1487528_1488428_+	cd01002, PBP2_Ehub_like, Substrate binding domain of ectoine/hydroxyectoine specific ABC transport system; the type 2 periplasmic binding protein fold	NA|268aa|down_7|NZ_CP013126.1_1488436_1489240_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|218aa|down_8|NZ_CP013126.1_1489239_1489893_+	TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD	NA|249aa|down_9|NZ_CP013126.1_1489942_1490689_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	7	1585926-1586064	7	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	GTCGCGGGCCCGGCGCAGCGGTTCAGGTCTGCGTCCGCGTCCGGGTGCTGC	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|77aa|up_8|NZ_CP013126.1_1577431_1577662_+,NA|68aa|up_6|NZ_CP013126.1_1578763_1578967_-,NA	NA|357aa|up_9|NZ_CP013126.1_1576168_1577239_+	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|77aa|up_8|NZ_CP013126.1_1577431_1577662_+	NA	NA|306aa|up_7|NZ_CP013126.1_1577845_1578763_+	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|68aa|up_6|NZ_CP013126.1_1578763_1578967_-	NA	NA|290aa|up_5|NZ_CP013126.1_1579223_1580093_-	pfam01844, HNH, HNH endonuclease	NA|508aa|up_4|NZ_CP013126.1_1580447_1581971_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|308aa|up_3|NZ_CP013126.1_1582302_1583226_-	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|227aa|up_2|NZ_CP013126.1_1583318_1583999_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|214aa|up_1|NZ_CP013126.1_1583995_1584637_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|386aa|up_0|NZ_CP013126.1_1584633_1585791_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|503aa|down_0|NZ_CP013126.1_1586143_1587652_+	PRK05326, PRK05326, potassium/proton antiporter	NA|182aa|down_1|NZ_CP013126.1_1587725_1588271_-	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|98aa|down_2|NZ_CP013126.1_1588283_1588577_-	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|543aa|down_3|NZ_CP013126.1_1588709_1590338_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|392aa|down_4|NZ_CP013126.1_1590629_1591805_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|250aa|down_5|NZ_CP013126.1_1592040_1592790_+	pfam04480, DUF559, Protein of unknown function (DUF559)	NA|102aa|down_6|NZ_CP013126.1_1592938_1593244_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|252aa|down_7|NZ_CP013126.1_1593240_1593996_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|448aa|down_8|NZ_CP013126.1_1594318_1595662_+	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|225aa|down_9|NZ_CP013126.1_1595812_1596487_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	8	2124878-2124988	8	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TCGGGGGTCGCGGGGGGGTCGTCTCCC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA|260aa|down_6|NZ_CP013126.1_2132107_2132887_+	NA|216aa|up_9|NZ_CP013126.1_2115504_2116152_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|230aa|up_8|NZ_CP013126.1_2116152_2116842_-	PRK07053, PRK07053, glutamine amidotransferase; Provisional	NA|207aa|up_7|NZ_CP013126.1_2117020_2117641_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|281aa|up_6|NZ_CP013126.1_2117772_2118615_-	pfam12822, ECF_trnsprt, ECF transporter, substrate-specific component	NA|571aa|up_5|NZ_CP013126.1_2118611_2120324_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|438aa|up_4|NZ_CP013126.1_2120320_2121634_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|218aa|up_3|NZ_CP013126.1_2121642_2122296_-	cd12087, TM_EGFR-like, Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases	NA|197aa|up_2|NZ_CP013126.1_2122618_2123209_-	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|297aa|up_1|NZ_CP013126.1_2123221_2124112_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|235aa|up_0|NZ_CP013126.1_2124108_2124813_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|162aa|down_0|NZ_CP013126.1_2125027_2125513_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|137aa|down_1|NZ_CP013126.1_2127620_2128031_+	PRK11770, PRK11770, YccF domain-containing protein	NA|148aa|down_2|NZ_CP013126.1_2128409_2128853_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|176aa|down_3|NZ_CP013126.1_2128875_2129403_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|239aa|down_4|NZ_CP013126.1_2129804_2130521_-	PRK07041, PRK07041, SDR family oxidoreductase	NA|451aa|down_5|NZ_CP013126.1_2130748_2132101_+	PRK14318, glmM, phosphoglucosamine mutase; Provisional	NA|260aa|down_6|NZ_CP013126.1_2132107_2132887_+	NA	NA|328aa|down_7|NZ_CP013126.1_2132915_2133899_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|275aa|down_8|NZ_CP013126.1_2133984_2134809_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|616aa|down_9|NZ_CP013126.1_2134935_2136783_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	9	2536168-2536277	9	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CGCCAGGGGGTGCAGGGGGGTTGCCCCCC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|173aa|up_5|NZ_CP013126.1_2529070_2529589_+,NA|174aa|down_5|NZ_CP013126.1_2539948_2540470_-	NA|239aa|up_9|NZ_CP013126.1_2523622_2524339_+	PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated	NA|504aa|up_8|NZ_CP013126.1_2524398_2525910_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|338aa|up_7|NZ_CP013126.1_2526035_2527049_+	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|372aa|up_6|NZ_CP013126.1_2527668_2528784_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|173aa|up_5|NZ_CP013126.1_2529070_2529589_+	NA	NA|334aa|up_4|NZ_CP013126.1_2529933_2530935_-	pfam13683, rve_3, Integrase core domain	NA|185aa|up_3|NZ_CP013126.1_2531032_2531587_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|66aa|up_2|NZ_CP013126.1_2531724_2531922_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|451aa|up_1|NZ_CP013126.1_2533514_2534867_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|432aa|up_0|NZ_CP013126.1_2534871_2536167_+	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|320aa|down_0|NZ_CP013126.1_2536280_2537240_-	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	NA|194aa|down_1|NZ_CP013126.1_2537321_2537903_+	pfam11290, DUF3090, Protein of unknown function (DUF3090)	NA|224aa|down_2|NZ_CP013126.1_2538032_2538704_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|89aa|down_3|NZ_CP013126.1_2538761_2539028_+	cd11547, NTP-PPase_HisE, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|287aa|down_4|NZ_CP013126.1_2539039_2539900_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|174aa|down_5|NZ_CP013126.1_2539948_2540470_-	NA	NA|161aa|down_6|NZ_CP013126.1_2540506_2540989_+	pfam07179, SseB, SseB protein N-terminal domain	NA|236aa|down_7|NZ_CP013126.1_2547423_2548131_+	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional	NA|333aa|down_8|NZ_CP013126.1_2548123_2549122_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|207aa|down_9|NZ_CP013126.1_2549255_2549876_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	10	3313321-3313412	10	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,WYL,cas3,DinG	Unclear	CGAAGCGACGTGGAGGGGTCCTCCCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|405aa|up_9|NZ_CP013126.1_3301497_3302712_+,NA|138aa|up_4|NZ_CP013126.1_3308064_3308478_+,NA	NA|405aa|up_9|NZ_CP013126.1_3301497_3302712_+	NA	NA|734aa|up_8|NZ_CP013126.1_3302998_3305200_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|306aa|up_7|NZ_CP013126.1_3305126_3306044_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|367aa|up_6|NZ_CP013126.1_3306105_3307206_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|230aa|up_5|NZ_CP013126.1_3307227_3307917_-	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|138aa|up_4|NZ_CP013126.1_3308064_3308478_+	NA	NA|487aa|up_3|NZ_CP013126.1_3308619_3310080_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|316aa|up_2|NZ_CP013126.1_3310176_3311124_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|216aa|up_1|NZ_CP013126.1_3311125_3311773_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|465aa|up_0|NZ_CP013126.1_3311846_3313241_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|212aa|down_0|NZ_CP013126.1_3313421_3314057_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|409aa|down_1|NZ_CP013126.1_3314259_3315486_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|285aa|down_2|NZ_CP013126.1_3315469_3316324_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|257aa|down_3|NZ_CP013126.1_3316320_3317091_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|362aa|down_4|NZ_CP013126.1_3317175_3318261_-	TIGR00744, Glucokinase_Glucose_kinase	NA|374aa|down_5|NZ_CP013126.1_3318265_3319387_-	pfam00877, NLPC_P60, NlpC/P60 family	DEDDh|605aa|down_6|NZ_CP013126.1_3319638_3321453_+	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|92aa|down_7|NZ_CP013126.1_3321470_3321746_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|193aa|down_8|NZ_CP013126.1_3321813_3322392_-	pfam01694, Rhomboid, Rhomboid family	NA|171aa|down_9|NZ_CP013126.1_3322538_3323051_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
GCF_001441165.1_ASM144116v1	NZ_CP013126	Acidipropionibacterium acidipropionici strain CGMCC 1.2230 chromosome, complete genome	11	3526577-3526687	11	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	CTCCACGTCGCTGCGCTCCTGCCTCCCCGAGCGGGTCAGGTC	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA|67aa|down_1|NZ_CP013126.1_3528772_3528973_-,NA|345aa|down_4|NZ_CP013126.1_3530058_3531093_-,NA|130aa|down_8|NZ_CP013126.1_3533800_3534190_-,NA|150aa|down_9|NZ_CP013126.1_3534186_3534636_-	NA|797aa|up_9|NZ_CP013126.1_3514619_3517010_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|426aa|up_8|NZ_CP013126.1_3517613_3518891_-	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|424aa|up_7|NZ_CP013126.1_3519015_3520287_+	pfam02646, RmuC, RmuC family	NA|323aa|up_6|NZ_CP013126.1_3520210_3521179_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|422aa|up_5|NZ_CP013126.1_3521310_3522576_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|85aa|up_4|NZ_CP013126.1_3522572_3522827_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|173aa|up_3|NZ_CP013126.1_3522834_3523353_-	pfam14030, DUF4245, Protein of unknown function (DUF4245)	NA|455aa|up_2|NZ_CP013126.1_3523410_3524775_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|227aa|up_1|NZ_CP013126.1_3524932_3525613_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|274aa|up_0|NZ_CP013126.1_3525734_3526556_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|679aa|down_0|NZ_CP013126.1_3526697_3528734_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|67aa|down_1|NZ_CP013126.1_3528772_3528973_-	NA	NA|147aa|down_2|NZ_CP013126.1_3529022_3529463_+	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|166aa|down_3|NZ_CP013126.1_3529507_3530005_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|345aa|down_4|NZ_CP013126.1_3530058_3531093_-	NA	NA|393aa|down_5|NZ_CP013126.1_3531104_3532283_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|226aa|down_6|NZ_CP013126.1_3532393_3533071_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|210aa|down_7|NZ_CP013126.1_3533162_3533792_+	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|130aa|down_8|NZ_CP013126.1_3533800_3534190_-	NA	NA|150aa|down_9|NZ_CP013126.1_3534186_3534636_-	NA
