assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001412655.1_ASM141265v1	NZ_CP012996	Pedobacter sp. PACM 27299, complete genome	1	725893-725988	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	Orphan	GGATCAATGCCAAAAGTTGTGGAGCA	26	1	4	725919-725962|725919-725962|725919-725962|725919-725962	NZ_CP012996.1_2031272-2031229|NZ_CP012996.1_2102219-2102176|NZ_CP012996.1_5740753-5740710|NZ_CP012996.1_852961-853004	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	NA,NA|122aa|down_1|NZ_CP012996.1_726970_727336_-,NA|122aa|down_2|NZ_CP012996.1_728351_728717_-,NA|216aa|down_4|NZ_CP012996.1_730184_730832_+	NA|469aa|up_9|NZ_CP012996.1_713028_714435_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|1064aa|up_8|NZ_CP012996.1_714638_717830_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|355aa|up_7|NZ_CP012996.1_717868_718933_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|445aa|up_6|NZ_CP012996.1_718929_720264_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|202aa|up_5|NZ_CP012996.1_720360_720966_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|339aa|up_4|NZ_CP012996.1_721842_722859_+	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|177aa|up_3|NZ_CP012996.1_723028_723559_+	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|224aa|up_2|NZ_CP012996.1_723677_724349_+	TIGR03462, Bifunctional_lycopene_cyclase/phytoene_synthase, lycopene cyclase domain	NA|79aa|up_1|NZ_CP012996.1_724348_724585_+	COG4892, COG4892, Predicted heme/steroid binding protein [General function prediction only]	NA|307aa|up_0|NZ_CP012996.1_724675_725596_-	cd01946, ribokinase_group_C, Ribokinase-like subgroup C	NA|318aa|down_0|NZ_CP012996.1_726006_726960_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|122aa|down_1|NZ_CP012996.1_726970_727336_-	NA	NA|122aa|down_2|NZ_CP012996.1_728351_728717_-	NA	NA|182aa|down_3|NZ_CP012996.1_729567_730113_+	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	NA|216aa|down_4|NZ_CP012996.1_730184_730832_+	NA	NA|352aa|down_5|NZ_CP012996.1_730948_732004_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|230aa|down_6|NZ_CP012996.1_732000_732690_+	PRK11697, PRK11697, two-component system response regulator BtsR	NA|570aa|down_7|NZ_CP012996.1_732738_734448_+	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|296aa|down_8|NZ_CP012996.1_734524_735412_+	pfam11276, DUF3078, Protein of unknown function (DUF3078)	NA|110aa|down_9|NZ_CP012996.1_735413_735743_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
GCF_001412655.1_ASM141265v1	NZ_CP012996	Pedobacter sp. PACM 27299, complete genome	2	2529551-2529949	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	Orphan	TTTTCATTTCCAAAAATATCGGTA	24	0	0	NA	NA	NA	5	5	Orphan	cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	NA|106aa|up_7|NZ_CP012996.1_2522689_2523007_+,NA|159aa|down_1|NZ_CP012996.1_2531608_2532085_-,NA|90aa|down_5|NZ_CP012996.1_2535421_2535691_+,NA|71aa|down_6|NZ_CP012996.1_2536859_2537072_+	NA|232aa|up_9|NZ_CP012996.1_2520436_2521132_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|473aa|up_8|NZ_CP012996.1_2521241_2522660_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|106aa|up_7|NZ_CP012996.1_2522689_2523007_+	NA	NA|295aa|up_6|NZ_CP012996.1_2523091_2523976_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|255aa|up_5|NZ_CP012996.1_2524139_2524904_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|230aa|up_4|NZ_CP012996.1_2524974_2525664_+	pfam09365, DUF2461, Conserved hypothetical protein (DUF2461)	NA|452aa|up_3|NZ_CP012996.1_2525666_2527022_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|277aa|up_2|NZ_CP012996.1_2527014_2527845_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|327aa|up_1|NZ_CP012996.1_2528006_2528987_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|119aa|up_0|NZ_CP012996.1_2529026_2529383_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_0|NZ_CP012996.1_2530273_2531521_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|159aa|down_1|NZ_CP012996.1_2531608_2532085_-	NA	NA|403aa|down_2|NZ_CP012996.1_2532156_2533365_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|238aa|down_3|NZ_CP012996.1_2533435_2534149_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|359aa|down_4|NZ_CP012996.1_2534145_2535222_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|90aa|down_5|NZ_CP012996.1_2535421_2535691_+	NA	NA|71aa|down_6|NZ_CP012996.1_2536859_2537072_+	NA	NA|2042aa|down_7|NZ_CP012996.1_2537099_2543225_-	pfam17973, bMG10, Bacterial Alpha-2-macroglobulin MG10 domain	NA|255aa|down_8|NZ_CP012996.1_2543275_2544040_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|218aa|down_9|NZ_CP012996.1_2544135_2544789_+	pfam07081, DUF1349, Protein of unknown function (DUF1349)
GCF_001412655.1_ASM141265v1	NZ_CP012996	Pedobacter sp. PACM 27299, complete genome	3	4656511-4656668	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	Orphan	CCTCCAAAAACAGCCACAATCTC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	NA|521aa|up_7|NZ_CP012996.1_4649885_4651448_+,NA|468aa|up_6|NZ_CP012996.1_4651503_4652907_+,NA|230aa|down_6|NZ_CP012996.1_4664599_4665289_+	NA|826aa|up_9|NZ_CP012996.1_4646923_4649401_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|130aa|up_8|NZ_CP012996.1_4649403_4649793_-	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|521aa|up_7|NZ_CP012996.1_4649885_4651448_+	NA	NA|468aa|up_6|NZ_CP012996.1_4651503_4652907_+	NA	NA|228aa|up_5|NZ_CP012996.1_4652937_4653621_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|78aa|up_4|NZ_CP012996.1_4653645_4653879_-	pfam01809, Haemolytic, Haemolytic domain	NA|132aa|up_3|NZ_CP012996.1_4653862_4654258_-	PRK01903, rnpA, ribonuclease P protein component	NA|53aa|up_2|NZ_CP012996.1_4654321_4654480_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|246aa|up_1|NZ_CP012996.1_4654589_4655327_-	PRK11697, PRK11697, two-component system response regulator BtsR	NA|333aa|up_0|NZ_CP012996.1_4655323_4656322_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|290aa|down_0|NZ_CP012996.1_4657421_4658291_+	cd14727, ChanN-like, ChaN is an iron-regulated, heme-binding protein	NA|148aa|down_1|NZ_CP012996.1_4658588_4659032_-	PRK13952, mscL, large conductance mechanosensitive channel protein MscL	NA|490aa|down_2|NZ_CP012996.1_4659350_4660820_+	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|156aa|down_3|NZ_CP012996.1_4660834_4661302_-	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|156aa|down_4|NZ_CP012996.1_4661529_4661997_-	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|779aa|down_5|NZ_CP012996.1_4662262_4664599_+	PRK07877, PRK07877, Rv1355c family protein	NA|230aa|down_6|NZ_CP012996.1_4664599_4665289_+	NA	NA|721aa|down_7|NZ_CP012996.1_4665288_4667451_+	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling	NA|360aa|down_8|NZ_CP012996.1_4667462_4668542_+	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|135aa|down_9|NZ_CP012996.1_4668531_4668936_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains
GCF_001412655.1_ASM141265v1	NZ_CP012996	Pedobacter sp. PACM 27299, complete genome	4	4952922-4953029	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	Orphan	TTAGTCTTATCGTTTATATGGATAAAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	NA|182aa|up_7|NZ_CP012996.1_4942456_4943002_-,NA	NA|315aa|up_9|NZ_CP012996.1_4939843_4940788_-	cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins	NA|457aa|up_8|NZ_CP012996.1_4940865_4942236_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|182aa|up_7|NZ_CP012996.1_4942456_4943002_-	NA	NA|176aa|up_6|NZ_CP012996.1_4943116_4943644_+	pfam03703, bPH_2, Bacterial PH domain	NA|532aa|up_5|NZ_CP012996.1_4943633_4945229_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|769aa|up_4|NZ_CP012996.1_4945349_4947656_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|232aa|up_3|NZ_CP012996.1_4947866_4948562_+	pfam14123, DUF4290, Domain of unknown function (DUF4290)	NA|442aa|up_2|NZ_CP012996.1_4948603_4949929_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|454aa|up_1|NZ_CP012996.1_4950064_4951426_-	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|361aa|up_0|NZ_CP012996.1_4951579_4952662_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|211aa|down_0|NZ_CP012996.1_4953260_4953893_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|374aa|down_1|NZ_CP012996.1_4953883_4955005_-	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|377aa|down_2|NZ_CP012996.1_4955134_4956265_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|368aa|down_3|NZ_CP012996.1_4956265_4957369_+	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|298aa|down_4|NZ_CP012996.1_4957369_4958263_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|937aa|down_5|NZ_CP012996.1_4958455_4961266_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|93aa|down_6|NZ_CP012996.1_4961269_4961548_+	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|393aa|down_7|NZ_CP012996.1_4961540_4962719_-	PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated	NA|139aa|down_8|NZ_CP012996.1_4962723_4963140_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|268aa|down_9|NZ_CP012996.1_4963146_4963950_-	PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
GCF_001412655.1_ASM141265v1	NZ_CP012996	Pedobacter sp. PACM 27299, complete genome	5	5567712-5567904	1,5	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	Orphan	CGGTGGTGGAGGCAGACGCGAAGGCGGAAGC,GGTGGCAGACGCGAAGGCGGAAG	31,23	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,DEDDh,csa3,WYL,c2c10_CAS-V-U3	NA|143aa|up_3|NZ_CP012996.1_5562271_5562700_+,NA|107aa|down_0|NZ_CP012996.1_5568025_5568346_-	NA|68aa|up_9|NZ_CP012996.1_5555525_5555729_-	pfam14375, Cys_rich_CWC, Cysteine-rich CWC	NA|793aa|up_8|NZ_CP012996.1_5556189_5558568_-	PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit	NA|325aa|up_7|NZ_CP012996.1_5558677_5559652_-	PLN02492, PLN02492, ribonucleoside-diphosphate reductase	NA|133aa|up_6|NZ_CP012996.1_5560026_5560425_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|161aa|up_5|NZ_CP012996.1_5560534_5561017_-	PRK05508, PRK05508, methionine-R-sulfoxide reductase	NA|291aa|up_4|NZ_CP012996.1_5561158_5562031_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|143aa|up_3|NZ_CP012996.1_5562271_5562700_+	NA	NA|593aa|up_2|NZ_CP012996.1_5562864_5564643_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|252aa|up_1|NZ_CP012996.1_5564638_5565394_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|166aa|up_0|NZ_CP012996.1_5565450_5565948_+	pfam14126, DUF4293, Domain of unknown function (DUF4293)	NA|107aa|down_0|NZ_CP012996.1_5568025_5568346_-	NA	NA|333aa|down_1|NZ_CP012996.1_5568398_5569397_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|449aa|down_2|NZ_CP012996.1_5569472_5570819_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|485aa|down_3|NZ_CP012996.1_5570863_5572318_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|206aa|down_4|NZ_CP012996.1_5572405_5573023_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|759aa|down_5|NZ_CP012996.1_5573298_5575575_+	PRK07229, PRK07229, aconitate hydratase; Validated	NA|151aa|down_6|NZ_CP012996.1_5575677_5576130_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|446aa|down_7|NZ_CP012996.1_5576158_5577496_-	TIGR03356, BGL, beta-galactosidase	NA|605aa|down_8|NZ_CP012996.1_5577631_5579446_-	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog	NA|158aa|down_9|NZ_CP012996.1_5579655_5580129_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase
