assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001409195.1_C2346	NZ_LN890520	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1	1	2480767-2481392	1,1	CRT,CRISPRCasFinder	no		c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CCGGCAGGCTGGTCAGNNGGTTANNA,ATCAGCTCCTTCAGTTCTGACGGCAAC	26,27	0	0	NA	NA	NA:NA	10,1	10	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|207aa|up_3|NZ_LN890520.1_2475090_2475711_-,NA|53aa|down_1|NZ_LN890520.1_2484255_2484414_+,NA|63aa|down_2|NZ_LN890520.1_2484443_2484632_+	NA|530aa|up_9|NZ_LN890520.1_2468419_2470009_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|115aa|up_8|NZ_LN890520.1_2470012_2470357_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|397aa|up_7|NZ_LN890520.1_2470747_2471938_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|232aa|up_6|NZ_LN890520.1_2471965_2472661_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|587aa|up_5|NZ_LN890520.1_2472812_2474573_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|up_4|NZ_LN890520.1_2474697_2474982_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|207aa|up_3|NZ_LN890520.1_2475090_2475711_-	NA	NA|336aa|up_2|NZ_LN890520.1_2475738_2476746_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|up_1|NZ_LN890520.1_2476925_2477153_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|587aa|up_0|NZ_LN890520.1_2477184_2478945_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|83aa|down_0|NZ_LN890520.1_2482305_2482554_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|53aa|down_1|NZ_LN890520.1_2484255_2484414_+	NA	NA|63aa|down_2|NZ_LN890520.1_2484443_2484632_+	NA	NA|188aa|down_3|NZ_LN890520.1_2484824_2485388_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|216aa|down_4|NZ_LN890520.1_2486206_2486854_+	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP	NA|348aa|down_5|NZ_LN890520.1_2486897_2487941_-	COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]	NA|186aa|down_6|NZ_LN890520.1_2487937_2488495_-	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional	NA|644aa|down_7|NZ_LN890520.1_2488491_2490423_-	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF	NA|160aa|down_8|NZ_LN890520.1_2490419_2490899_-	PRK13150, PRK13150, cytochrome c maturation protein CcmE	NA|71aa|down_9|NZ_LN890520.1_2490895_2491108_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_001409195.1_C2346	NZ_LN890520	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1	2	3220370-3222411	2,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	33,33,32	33	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_LN890520.1_3212236_3212998_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LN890520.1_3212978_3214028_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LN890520.1_3214024_3214504_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LN890520.1_3214503_3215214_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LN890520.1_3215232_3215544_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LN890520.1_3215734_3216058_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LN890520.1_3216108_3216714_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LN890520.1_3216700_3218140_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LN890520.1_3218149_3219058_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LN890520.1_3219308_3220355_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LN890520.1_3222507_3222801_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_LN890520.1_3222800_3223721_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_LN890520.1_3223717_3224368_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_LN890520.1_3224349_3225096_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LN890520.1_3225106_3226165_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_LN890520.1_3226178_3226715_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|down_6|NZ_LN890520.1_3226711_3228262_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_7|NZ_LN890520.1_3228682_3231343_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_LN890520.1_3231786_3232740_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_LN890520.1_3232827_3233562_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001409195.1_C2346	NZ_LN890520	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1	3	3238918-3240778	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	30,30,29	30	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA|331aa|down_9|NZ_LN890520.1_3252362_3253355_+	cas7|353aa|up_9|NZ_LN890520.1_3225106_3226165_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_LN890520.1_3226178_3226715_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|up_7|NZ_LN890520.1_3226711_3228262_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|up_6|NZ_LN890520.1_3228682_3231343_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_LN890520.1_3231786_3232740_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_LN890520.1_3232827_3233562_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_LN890520.1_3233637_3235350_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_LN890520.1_3235349_3237149_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_LN890520.1_3237572_3237935_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_LN890520.1_3238022_3238820_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_LN890520.1_3241074_3241746_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_LN890520.1_3241881_3243180_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_LN890520.1_3243262_3244900_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_LN890520.1_3245127_3245928_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_LN890520.1_3246534_3247122_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|258aa|down_5|NZ_LN890520.1_3249915_3250689_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_6|NZ_LN890520.1_3250708_3251215_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_7|NZ_LN890520.1_3251229_3251700_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_8|NZ_LN890520.1_3251696_3252233_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|331aa|down_9|NZ_LN890520.1_3252362_3253355_+	NA
GCF_001409195.1_C2346	NZ_LN890520	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1	4	3667131-3667498	3	PILER-CR	no		c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ATAGCGTCGTGGACAGTCATTCATCCTGCCGCCCTGTAAAAGCA	44	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|55aa|up_8|NZ_LN890520.1_3654708_3654873_+,NA	NA|234aa|up_9|NZ_LN890520.1_3653983_3654685_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|55aa|up_8|NZ_LN890520.1_3654708_3654873_+	NA	NA|437aa|up_7|NZ_LN890520.1_3654985_3656296_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|444aa|up_6|NZ_LN890520.1_3656321_3657653_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|455aa|up_5|NZ_LN890520.1_3657968_3659333_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|765aa|up_4|NZ_LN890520.1_3659402_3661697_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|up_3|NZ_LN890520.1_3661730_3662939_-	PRK12379, PRK12379, propionate kinase	NA|444aa|up_2|NZ_LN890520.1_3663005_3664337_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|up_1|NZ_LN890520.1_3664357_3665347_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|up_0|NZ_LN890520.1_3665444_3666383_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|382aa|down_0|NZ_LN890520.1_3667933_3669079_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_LN890520.1_3669176_3670067_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_LN890520.1_3670092_3670863_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|524aa|down_3|NZ_LN890520.1_3671392_3672964_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|285aa|down_4|NZ_LN890520.1_3673221_3674076_+	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|424aa|down_5|NZ_LN890520.1_3674195_3675467_+	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|155aa|down_6|NZ_LN890520.1_3675481_3675946_+	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|95aa|down_7|NZ_LN890520.1_3675976_3676261_+	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|458aa|down_8|NZ_LN890520.1_3676264_3677638_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|348aa|down_9|NZ_LN890520.1_3677681_3678725_+	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase
