assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001409175.1_99_3134	NZ_LN890524	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1	1	1023449-1023535	1	CRISPRCasFinder	no	cas14j	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	CGGTTTTCACCCGTCAGATTCTGA	24	0	0	NA	NA	NA	1	1	TypeV	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|132aa|up_9|NZ_LN890524.1_1019366_1019762_-,NA|126aa|up_7|NZ_LN890524.1_1019987_1020365_-,NA|70aa|up_6|NZ_LN890524.1_1020327_1020537_-,NA|62aa|up_5|NZ_LN890524.1_1020724_1020910_-,NA|65aa|up_4|NZ_LN890524.1_1020906_1021101_-,NA|109aa|up_0|NZ_LN890524.1_1022657_1022984_-,NA|108aa|down_1|NZ_LN890524.1_1025993_1026317_+	NA|132aa|up_9|NZ_LN890524.1_1019366_1019762_-	NA	NA|79aa|up_8|NZ_LN890524.1_1019751_1019988_-	PRK13806, rpsA, 30S ribosomal protein S1; Provisional	NA|126aa|up_7|NZ_LN890524.1_1019987_1020365_-	NA	NA|70aa|up_6|NZ_LN890524.1_1020327_1020537_-	NA	NA|62aa|up_5|NZ_LN890524.1_1020724_1020910_-	NA	NA|65aa|up_4|NZ_LN890524.1_1020906_1021101_-	NA	NA|139aa|up_3|NZ_LN890524.1_1021202_1021619_-	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed	NA|150aa|up_2|NZ_LN890524.1_1021760_1022210_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|81aa|up_1|NZ_LN890524.1_1022293_1022536_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|109aa|up_0|NZ_LN890524.1_1022657_1022984_-	NA	NA|624aa|down_0|NZ_LN890524.1_1024119_1025991_+	cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases	NA|108aa|down_1|NZ_LN890524.1_1025993_1026317_+	NA	NA|272aa|down_2|NZ_LN890524.1_1026313_1027129_+	pfam03589, Antiterm, Antitermination protein	NA|398aa|down_3|NZ_LN890524.1_1027284_1028478_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|185aa|down_4|NZ_LN890524.1_1028734_1029289_+	PRK15272, PRK15272, pertussis-like toxin subunit ArtA	NA|142aa|down_5|NZ_LN890524.1_1029215_1029641_+	PRK15267, PRK15267, subtilase cytotoxin subunit B-like protein; Provisional	NA|130aa|down_6|NZ_LN890524.1_1029953_1030343_+	pfam16931, Phage_holin_8, Putative phage holin	NA|94aa|down_7|NZ_LN890524.1_1030329_1030611_+	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3	NA|205aa|down_8|NZ_LN890524.1_1030610_1031225_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|161aa|down_9|NZ_LN890524.1_1031221_1031704_+	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein
GCF_001409175.1_99_3134	NZ_LN890524	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1	2	2501153-2501778	1,2	CRT,CRISPRCasFinder	no		c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CCGGCAGGCTGGTCAGNNGGTTANNA,ATCAGCTCCTTCAGTTCTGACGGCAAC	26,27	0	0	NA	NA	NA:NA	10,1	10	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|207aa|up_3|NZ_LN890524.1_2495476_2496097_-,NA|53aa|down_1|NZ_LN890524.1_2504641_2504800_+,NA|63aa|down_2|NZ_LN890524.1_2504829_2505018_+	NA|530aa|up_9|NZ_LN890524.1_2488805_2490395_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|115aa|up_8|NZ_LN890524.1_2490398_2490743_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|397aa|up_7|NZ_LN890524.1_2491133_2492324_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|232aa|up_6|NZ_LN890524.1_2492351_2493047_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|587aa|up_5|NZ_LN890524.1_2493198_2494959_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|up_4|NZ_LN890524.1_2495083_2495368_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|207aa|up_3|NZ_LN890524.1_2495476_2496097_-	NA	NA|336aa|up_2|NZ_LN890524.1_2496124_2497132_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|up_1|NZ_LN890524.1_2497311_2497539_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|587aa|up_0|NZ_LN890524.1_2497570_2499331_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|83aa|down_0|NZ_LN890524.1_2502691_2502940_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|53aa|down_1|NZ_LN890524.1_2504641_2504800_+	NA	NA|63aa|down_2|NZ_LN890524.1_2504829_2505018_+	NA	NA|188aa|down_3|NZ_LN890524.1_2505210_2505774_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|216aa|down_4|NZ_LN890524.1_2506592_2507240_+	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP	NA|348aa|down_5|NZ_LN890524.1_2507283_2508327_-	COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]	NA|186aa|down_6|NZ_LN890524.1_2508323_2508881_-	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional	NA|644aa|down_7|NZ_LN890524.1_2508877_2510809_-	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF	NA|160aa|down_8|NZ_LN890524.1_2510805_2511285_-	PRK13150, PRK13150, cytochrome c maturation protein CcmE	NA|71aa|down_9|NZ_LN890524.1_2511281_2511494_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_001409175.1_99_3134	NZ_LN890524	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1	3	3159157-3161564	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	39,39,38	39	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_LN890524.1_3151023_3151785_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LN890524.1_3151765_3152815_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LN890524.1_3152811_3153291_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LN890524.1_3153290_3154001_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LN890524.1_3154019_3154331_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LN890524.1_3154521_3154845_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LN890524.1_3154895_3155501_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LN890524.1_3155487_3156927_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LN890524.1_3156936_3157845_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LN890524.1_3158095_3159142_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LN890524.1_3161660_3161954_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_LN890524.1_3161953_3162874_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_LN890524.1_3162870_3163521_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_LN890524.1_3163502_3164249_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LN890524.1_3164259_3165318_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_LN890524.1_3165331_3165868_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|down_6|NZ_LN890524.1_3165864_3167415_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_7|NZ_LN890524.1_3167835_3170496_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_LN890524.1_3170939_3171893_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_LN890524.1_3171980_3172715_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001409175.1_99_3134	NZ_LN890524	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1	4	3178071-3179687	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,25	26	TypeI-E	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_LN890524.1_3164259_3165318_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_LN890524.1_3165331_3165868_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|517aa|up_7|NZ_LN890524.1_3165864_3167415_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|up_6|NZ_LN890524.1_3167835_3170496_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_LN890524.1_3170939_3171893_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_LN890524.1_3171980_3172715_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_LN890524.1_3172790_3174503_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_LN890524.1_3174502_3176302_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_LN890524.1_3176725_3177088_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_LN890524.1_3177175_3177973_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_LN890524.1_3179983_3180655_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_LN890524.1_3180790_3182089_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_LN890524.1_3182171_3183809_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_LN890524.1_3184036_3184837_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_LN890524.1_3185443_3186031_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_LN890524.1_3186110_3188810_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_LN890524.1_3188822_3189596_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_LN890524.1_3189615_3190122_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_LN890524.1_3190136_3190607_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_LN890524.1_3190603_3191140_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_001409175.1_99_3134	NZ_LN890524	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 chromosome 1	5	3544897-3545264	3	PILER-CR	no		c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ATAGCGTCGTGGACAGTCATTCATCCTGCCGCCCTGTAAAAGCA	44	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,DEDDh,WYL,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|55aa|up_8|NZ_LN890524.1_3532474_3532639_+,NA	NA|234aa|up_9|NZ_LN890524.1_3531749_3532451_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|55aa|up_8|NZ_LN890524.1_3532474_3532639_+	NA	NA|437aa|up_7|NZ_LN890524.1_3532751_3534062_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|444aa|up_6|NZ_LN890524.1_3534087_3535419_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|455aa|up_5|NZ_LN890524.1_3535734_3537099_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|765aa|up_4|NZ_LN890524.1_3537168_3539463_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|up_3|NZ_LN890524.1_3539496_3540705_-	PRK12379, PRK12379, propionate kinase	NA|444aa|up_2|NZ_LN890524.1_3540771_3542103_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|up_1|NZ_LN890524.1_3542123_3543113_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|up_0|NZ_LN890524.1_3543210_3544149_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|382aa|down_0|NZ_LN890524.1_3545699_3546845_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_LN890524.1_3546942_3547833_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_LN890524.1_3547858_3548629_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|524aa|down_3|NZ_LN890524.1_3549158_3550730_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|285aa|down_4|NZ_LN890524.1_3550987_3551842_+	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|424aa|down_5|NZ_LN890524.1_3551961_3553233_+	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|155aa|down_6|NZ_LN890524.1_3553247_3553712_+	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|95aa|down_7|NZ_LN890524.1_3553742_3554027_+	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|458aa|down_8|NZ_LN890524.1_3554030_3555404_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|348aa|down_9|NZ_LN890524.1_3555447_3556491_+	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase
