The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT905089	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, plasmid: 1	97394	0	45171	97394	tail,holin,head,transposase,integrase	Escherichia_phage(52.5%)	41	38239:38253	42650:42664
WP_000908460.1|0_318_+	hypothetical protein	NA	Q71TC5	Escherichia_phage	100.0	2.9e-28
WP_046660313.1|325_1105_+	hypothetical protein	NA	Q71TC6	Escherichia_phage	96.5	5.4e-145
WP_000188917.1|1314_1881_+	hypothetical protein	NA	Q1MVL0	Enterobacteria_phage	98.9	4.3e-99
WP_000523980.1|1891_2503_+	hypothetical protein	NA	Q71TN8	Escherichia_phage	99.5	2.9e-109
WP_050153530.1|2517_3399_+	hypothetical protein	NA	Q71TC9	Escherichia_phage	98.3	5.9e-172
WP_094593565.1|3480_7170_+	transglycosylase SLT domain-containing protein	NA	Q1MVL3	Enterobacteria_phage	90.1	0.0e+00
WP_000002800.1|7169_7526_+	hypothetical protein	NA	Q71TP1	Escherichia_phage	100.0	1.0e-61
WP_000047924.1|7522_8956_+	bleomycin hydrolase	NA	A0A1B0VAD6	Salmonella_phage	99.8	1.1e-271
WP_050153532.1|8955_9792_+	hypothetical protein	NA	A0A1B0V7F2	Salmonella_phage	99.6	6.9e-154
WP_001286325.1|9870_10305_+	hypothetical protein	NA	A0A077SLL3	Escherichia_phage	99.3	7.4e-75
WP_094593566.1|10316_13211_+|tail	phage tail protein	tail	A0A1B0V7G4	Salmonella_phage	43.2	1.7e-13
WP_000072166.1|13217_13832_-|tail	tail assembly protein	tail	Q9MCR5	Enterobacteria_phage	61.5	1.7e-61
WP_001427100.1|13831_14344_-|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	47.9	1.3e-33
WP_001165547.1|14415_14988_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	85.0	4.4e-83
WP_000145199.1|15423_15687_+	hypothetical protein	NA	Q71TD9	Escherichia_phage	67.1	1.1e-22
WP_000887652.1|15761_16091_+|holin	holin	holin	Q37876	Escherichia_phage	100.0	1.3e-52
WP_000580776.1|16087_16531_+	hypothetical protein	NA	A0A077SK09	Escherichia_phage	100.0	1.3e-82
WP_001339178.1|16517_17120_+	hypothetical protein	NA	Q1MVM6	Enterobacteria_phage	99.5	4.6e-99
WP_050153493.1|17121_19041_+	darA	NA	A0A1B0V7H1	Salmonella_phage	98.6	0.0e+00
WP_000175482.1|19037_19403_+	hypothetical protein	NA	Q1MVM8	Enterobacteria_phage	99.2	2.3e-45
WP_072077112.1|19442_20651_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	95.8	1.8e-219
WP_050153499.1|20750_23738_+	hypothetical protein	NA	A0A1B0VFX4	Salmonella_phage	99.5	0.0e+00
WP_001165936.1|23727_24036_+	hypothetical protein	NA	O21974	Escherichia_phage	97.1	5.4e-48
WP_050153501.1|24067_25162_-	hypothetical protein	NA	Q5QBP2	Enterobacteria_phage	36.3	1.1e-39
WP_050153502.1|25154_25943_-	hypothetical protein	NA	A0A077SK34	Escherichia_phage	99.2	6.1e-144
WP_050153503.1|26145_26634_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	98.8	7.2e-87
WP_050153534.1|26803_27361_+	lysozyme	NA	Q71TF3	Escherichia_phage	97.3	2.6e-104
WP_000132940.1|27652_28672_-|head	head processing protein	head	Q71TR6	Escherichia_phage	100.0	3.2e-185
WP_050153505.1|28664_30374_-	hypothetical protein	NA	A0A077SL38	Escherichia_phage	99.6	0.0e+00
WP_050153507.1|30449_37217_+	N-6 DNA methylase	NA	Q1MVN7	Enterobacteria_phage	97.9	0.0e+00
WP_000224043.1|37250_37691_+	hypothetical protein	NA	A0A077SLF0	Escherichia_phage	100.0	1.7e-79
WP_000747846.1|37687_37936_+	hypothetical protein	NA	Q71TG0	Escherichia_phage	100.0	1.8e-41
WP_023153803.1|37997_38948_+	DUF4935 domain-containing protein	NA	NA	NA	NA	NA
38239:38253	attL	ATTCACTATTTAATG	NA	NA	NA	NA
WP_047655079.1|38990_39632_-	hypothetical protein	NA	A0A1B0VAG4	Salmonella_phage	92.0	1.3e-107
WP_000848375.1|39820_40381_-	Ref family protein	NA	A0A077SL37	Escherichia_phage	100.0	5.0e-100
WP_001224236.1|40627_40939_-	hypothetical protein	NA	A0A077SK03	Escherichia_phage	99.0	2.3e-46
WP_000067530.1|40989_42021_-|integrase	tyrosine-type recombinase/integrase	integrase	Q71TG5	Escherichia_phage	100.0	9.9e-195
WP_000542336.1|42028_42250_-	hypothetical protein	NA	Q5QBN7	Enterobacteria_phage	100.0	4.5e-36
WP_000874154.1|42854_43064_+	hypothetical protein	NA	Q5XLQ8	Enterobacteria_phage	100.0	4.8e-32
42650:42664	attR	ATTCACTATTTAATG	NA	NA	NA	NA
WP_000611656.1|43174_44026_+	hypothetical protein	NA	A0A077SLM8	Escherichia_phage	99.6	6.1e-158
WP_050153509.1|44058_45171_-	antirepressor	NA	A0A077SLR9	Escherichia_phage	86.8	1.3e-176
>prophage 2
NZ_LT905089	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, plasmid: 1	97394	48511	96815	97394		Escherichia_phage(66.1%)	60	NA	NA
WP_001312282.1|48511_48964_-	late promoter-activating protein (Gp10)	NA	Q71T63	Escherichia_phage	99.3	6.7e-79
WP_050153511.1|49052_50096_-	DUF968 domain-containing protein	NA	A0A1B0VBU2	Salmonella_phage	99.1	6.7e-207
WP_000113019.1|50123_50303_-	hypothetical protein	NA	Q71TH5	Escherichia_phage	98.3	2.7e-23
WP_001216045.1|50307_50688_-	type II toxin-antitoxin system death-on-curing family toxin	NA	Q71T66	Escherichia_phage	100.0	1.9e-63
WP_001190712.1|50687_50909_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
WP_000506726.1|50981_51371_-	DNA repair protein	NA	Q1MVE7	Enterobacteria_phage	99.2	1.4e-69
WP_001377386.1|51494_51746_-	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	94.0	4.6e-37
WP_001261544.1|52407_52770_-	hypothetical protein	NA	Q71TI4	Escherichia_phage	100.0	2.2e-56
WP_000057449.1|52766_53699_-	hypothetical protein	NA	A0A1B0VDS6	Salmonella_phage	98.4	1.4e-179
WP_000988658.1|53680_54055_-	hypothetical protein	NA	A0A077SL57	Escherichia_phage	96.0	3.2e-66
WP_050153512.1|54061_54355_-	hypothetical protein	NA	A0A077SK23	Escherichia_phage	90.7	2.7e-44
WP_000516537.1|54533_54767_-	hypothetical protein	NA	A0A1B0V7L5	Salmonella_phage	97.4	1.6e-36
WP_050153513.1|54849_55758_-	DUF551 domain-containing protein	NA	A0A1B0V865	Salmonella_phage	54.6	6.5e-65
WP_000224220.1|55768_56032_-	hypothetical protein	NA	A0A2P0P958	Salmonella_phage	73.6	6.7e-31
WP_033550033.1|56033_56591_-	ead/Ea22-like family protein	NA	A0A0N7BYR8	Escherichia_phage	62.8	5.1e-36
WP_000118152.1|56592_56892_-	hypothetical protein	NA	Q716F3	Shigella_phage	100.0	1.5e-58
WP_023154014.1|56888_57614_-	ead/Ea22-like family protein	NA	A0A0U2QW67	Escherichia_phage	49.8	7.5e-48
WP_023352820.1|57610_57850_-	hypothetical protein	NA	S5MQM0	Escherichia_phage	97.5	1.3e-36
WP_000158004.1|57842_58046_-	hypothetical protein	NA	A0A2R2Z313	Escherichia_phage	95.5	5.2e-31
WP_023153717.1|58129_58858_-	hypothetical protein	NA	Q71T76	Escherichia_phage	99.1	1.7e-140
WP_000021768.1|59052_59559_-	hypothetical protein	NA	A0A1B0VAK0	Salmonella_phage	99.4	1.8e-93
WP_023153718.1|59631_60894_-	hypothetical protein	NA	Q71TI8	Escherichia_phage	99.8	9.2e-235
WP_000684868.1|61195_61897_-	hypothetical protein	NA	Q71TJ0	Escherichia_phage	99.6	2.1e-143
WP_023352819.1|61893_62571_-	hypothetical protein	NA	Q71TJ1	Escherichia_phage	99.6	1.1e-133
WP_000484110.1|62567_63194_-	norphogenetic protein	NA	Q71T82	Escherichia_phage	100.0	6.1e-123
WP_000096174.1|63695_63851_-	hypothetical protein	NA	Q71TJ4	Escherichia_phage	100.0	7.0e-20
WP_000943607.1|63917_64496_-	norphogenetic protein	NA	Q71T85	Escherichia_phage	99.5	5.7e-107
WP_000840931.1|64498_64744_-	hypothetical protein	NA	Q71T86	Escherichia_phage	100.0	5.7e-40
WP_000235786.1|64890_65268_+	hypothetical protein	NA	Q38620	Escherichia_phage	100.0	2.2e-67
WP_050153515.1|65277_66495_+	hypothetical protein	NA	A0A077SL53	Escherichia_phage	99.8	5.4e-224
WP_050153517.1|66498_67227_+	hypothetical protein	NA	Q71TJ9	Escherichia_phage	99.6	1.6e-138
WP_000602717.1|67213_67999_+	hypothetical protein	NA	Q71T90	Escherichia_phage	99.6	4.6e-144
WP_050153519.1|68000_69017_+	hypothetical protein	NA	Q1MVH7	Enterobacteria_phage	99.4	1.3e-191
WP_000535208.1|69009_69642_+	hypothetical protein	NA	Q1MVH8	Enterobacteria_phage	100.0	9.0e-90
WP_033553809.1|69689_70688_-	hypothetical protein	NA	Q71TK3	Escherichia_phage	98.8	1.8e-193
WP_023351521.1|70692_72057_-	replicative DNA helicase	NA	O80281	Escherichia_phage	99.6	2.8e-253
WP_000751808.1|72446_73274_-	hypothetical protein	NA	A0A077SLJ6	Escherichia_phage	100.0	1.6e-131
WP_050153520.1|75247_77266_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	Q1MVI4	Enterobacteria_phage	96.4	0.0e+00
WP_000472529.1|77262_78168_-	recombination-associated protein RdgC	NA	A0A077SK17	Escherichia_phage	99.7	1.6e-159
WP_001177860.1|78160_78445_-	hypothetical protein	NA	Q71TA2	Escherichia_phage	100.0	3.5e-49
WP_001311689.1|78719_78899_+	hypothetical protein	NA	A0A1B0V758	Salmonella_phage	100.0	3.1e-27
WP_033553808.1|78907_79696_+	hypothetical protein	NA	A0A1B0V830	Salmonella_phage	98.9	2.8e-120
WP_001514466.1|79735_80158_+	hypothetical protein	NA	A0A1B0VCB0	Salmonella_phage	99.3	6.1e-58
WP_001281116.1|80335_80728_+	hypothetical protein	NA	A0A077SLJ1	Escherichia_phage	99.2	2.0e-71
WP_001113737.1|81062_81947_+	RepB family plasmid replication initiator protein	NA	A0A1B0VDL5	Salmonella_phage	100.0	9.5e-162
WP_001154687.1|82239_83049_+	GIY-YIG nuclease family protein	NA	A0A077SK46	Escherichia_phage	97.8	7.1e-156
WP_001285362.1|83217_84414_+	ParA family protein	NA	A0A077SL49	Escherichia_phage	100.0	1.6e-225
WP_000038866.1|84430_85432_+	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	100.0	1.7e-178
WP_032333494.1|85657_87364_+	hypothetical protein	NA	Q71TM1	Escherichia_phage	99.8	0.0e+00
WP_000085137.1|87424_89014_+	hypothetical protein	NA	Q71TB2	Escherichia_phage	98.9	2.9e-302
WP_000041757.1|89023_89839_+	hypothetical protein	NA	A0A1B0V835	Salmonella_phage	99.3	2.6e-113
WP_000035302.1|89874_90456_+	hypothetical protein	NA	A0A077SL48	Escherichia_phage	100.0	4.5e-104
WP_000509939.1|90467_90977_+	hypothetical protein	NA	Q1MVJ9	Enterobacteria_phage	100.0	1.3e-91
WP_000268409.1|91148_91745_+	hypothetical protein	NA	A0A077SLI4	Escherichia_phage	99.5	5.3e-108
WP_001561122.1|92035_92323_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_050153522.1|92393_93449_-	ParA family protein	NA	H2BD62	Pseudomonas_phage	70.8	5.3e-143
WP_050153523.1|93713_94559_-	hypothetical protein	NA	Q71TB9	Escherichia_phage	98.2	8.0e-150
WP_050153525.1|94588_95389_-	DNA-binding protein	NA	Q1MVK4	Enterobacteria_phage	99.2	9.2e-148
WP_050153527.1|95553_96597_-	antirepressor	NA	Q71TN2	Escherichia_phage	97.7	3.8e-186
WP_000245711.1|96593_96815_-	host cell division inhibitor Icd-like protein	NA	Q38414	Enterobacteria_phage	98.6	4.8e-38
>prophage 1
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	26	41083	4781957	head,tail,protease,transposase,integrase,plate	Burkholderia_virus(45.71%)	57	6977:6993	39991:40007
WP_072065708.1|26_458_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	47.3	2.3e-28
WP_001057643.1|457_1075_+|tail	tail assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_094593568.1|1081_2050_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	55.2	2.0e-64
WP_000852584.1|2052_2631_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2623_3727_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|3717_4065_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|4121_4649_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|4645_5800_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_010989167.1|5787_6003_-	membrane protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|5999_6884_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|6883_9349_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
6977:6993	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|9442_9580_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|9524_9860_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|9957_10239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034292.1|10241_10763_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
WP_000729859.1|10762_12190_-|tail	tail protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_001789770.1|12179_12434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|12430_12895_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|12894_13341_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|13342_13681_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|13690_14644_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|14658_15774_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|15988_16447_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|16449_17271_-|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|17251_18748_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000167502.1|18747_20343_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
WP_000124060.1|20339_20885_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|20884_21196_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|21195_21522_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|21518_22169_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|22152_22881_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|22883_23234_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|23477_24074_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_124682070.1|24162_24501_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.1	1.9e-22
WP_000990529.1|24678_26448_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|26458_27625_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|27627_27897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|27924_28455_+	host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|28743_29016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|29025_29328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|29324_29708_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000132655.1|29700_29916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|29912_30596_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|30592_30823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|30812_31028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000988475.1|31017_31470_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
WP_001281695.1|31441_31831_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|32012_32957_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|33483_35013_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|35023_36412_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|36586_37621_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_001539987.1|37755_37926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000500278.1|38037_38400_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|38386_38716_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|38750_39572_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|39840_40092_-	acid shock protein	NA	NA	NA	NA	NA
39991:40007	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000502118.1|40624_41083_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	483013	561213	4781957	head,tail,protease,terminase,holin,transposase,integrase	Salmonella_phage(73.02%)	96	534313:534328	574394:574409
WP_000938184.1|483013_483694_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|483901_484360_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|485023_485683_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|485769_486099_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|486095_486377_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|487113_487572_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|488703_489915_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|489972_490290_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000975203.1|490334_490751_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|490921_491584_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|491678_492137_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|492172_494227_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|494350_494797_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|494815_496969_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|496955_497561_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|497777_498287_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|498641_499694_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|499765_500218_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|500403_502164_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|502232_502751_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|502850_503018_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|503271_503835_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|503831_505472_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|505476_506730_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|506744_508652_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|508664_510773_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|510871_511981_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|511977_512520_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|512685_513696_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|513903_516516_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000497443.1|516941_517220_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
WP_000480169.1|517532_518234_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|519155_519674_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|519688_521200_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|521199_521880_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|521876_523076_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|523076_523430_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_000564971.1|523445_523583_-	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
WP_001685627.1|523670_524426_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|524484_524913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|524912_525644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|525838_526174_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|526170_527202_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|527204_527507_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|527510_528161_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|528160_530113_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|530290_530743_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|530746_531187_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|531198_532344_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|532347_532911_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|532885_533275_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|533261_533816_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|533812_534220_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|534185_534554_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
534313:534328	attL	TCGGCAATCAGTTTAT	NA	NA	NA	NA
WP_000627464.1|534595_535537_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|535548_536046_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|536050_537283_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|537297_538035_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|537919_539389_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|539388_540792_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|540757_541510_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|541599_541827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|541923_542301_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001075998.1|542878_543493_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|543492_543774_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|543760_544150_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|544366_544816_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|544951_545077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|545475_546273_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|546262_546409_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|546405_547017_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|547225_547828_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001574100.1|547867_548173_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
WP_001217670.1|548162_548402_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|548586_549084_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|549094_549274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989139.1|549516_549678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001220318.1|549759_550026_-	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
WP_000208074.1|550119_550692_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|550695_551169_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|551168_551693_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|551689_552037_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|552047_552797_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|552799_553783_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|553867_554242_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|554207_554444_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|554573_554978_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|555266_555467_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|555557_555854_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|555859_556645_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|556641_557322_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|557399_558464_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|558460_559342_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|559347_559587_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|559627_559876_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|559920_561213_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
574394:574409	attR	ATAAACTGATTGCCGA	NA	NA	NA	NA
>prophage 3
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	632351	639663	4781957	integrase,protease	Ralstonia_phage(16.67%)	7	627220:627234	638399:638413
627220:627234	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|632351_632729_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|632890_633088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|633299_635576_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|635606_635927_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|636250_636472_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|636601_638548_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
638399:638413	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|638544_639663_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 4
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	1252307	1339468	4781957	plate,tRNA,tail	Salmonella_phage(40.0%)	66	NA	NA
WP_000118732.1|1252307_1253651_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|1253654_1254191_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|1254257_1254743_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|1254979_1255405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|1255376_1255778_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|1257362_1257905_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|1257968_1258259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|1258344_1261008_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|1261375_1262278_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|1262264_1263089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|1263085_1263580_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|1263595_1265479_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|1265475_1266471_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|1268065_1268797_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|1268860_1269328_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|1269324_1270047_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|1270081_1270837_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|1270908_1272276_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|1272331_1273102_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|1273179_1273980_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|1274111_1275287_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|1275391_1276306_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|1276326_1277130_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|1283161_1285735_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|1285864_1286596_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|1286592_1287573_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|1287704_1288442_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|1288713_1289052_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|1289155_1289203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|1289302_1290463_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|1290423_1291332_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|1291389_1292511_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|1292520_1293591_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|1294030_1294549_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|1294541_1295762_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|1295918_1296266_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|1296306_1297074_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|1297118_1297667_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|1297685_1297934_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|1298277_1299639_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|1299804_1300596_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|1300615_1301902_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|1302022_1302580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|1302661_1303252_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|1303375_1304254_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|1304339_1306001_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|1306149_1306488_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|1306653_1306944_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|1306933_1307410_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|1307559_1308042_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_055389222.1|1308661_1319536_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_000533850.1|1319599_1321009_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|1321005_1323162_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|1323193_1324357_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|1324899_1325673_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000972389.1|1326076_1326295_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|1326385_1327486_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|1327482_1327968_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282793.1|1327964_1331042_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000763311.1|1331034_1331154_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|1331168_1331471_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|1331525_1332041_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|1332050_1333223_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|1333365_1333932_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|1334615_1335731_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_001111827.1|1335811_1339468_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 5
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	1657408	1701111	4781957	transposase,bacteriocin,tRNA,protease	Bacillus_virus(25.0%)	47	NA	NA
WP_001204111.1|1657408_1657867_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|1658056_1659136_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|1659237_1660401_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|1660422_1661469_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|1661842_1662268_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|1662293_1662872_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|1662872_1663580_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000367758.1|1663561_1664245_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|1664238_1664895_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|1664999_1665458_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|1665646_1667638_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|1667913_1668672_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|1668772_1669693_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|1669920_1671897_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|1671905_1672037_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001803086.1|1672331_1672631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|1672686_1673841_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|1674333_1675728_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_000856775.1|1675806_1676304_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|1676399_1677107_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|1677183_1677915_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|1677934_1678882_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|1679097_1679661_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|1679660_1680077_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|1680123_1680810_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|1680939_1681920_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|1681937_1682642_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|1682660_1683227_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|1683223_1683514_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|1683521_1684115_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|1684107_1685244_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|1685334_1686342_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|1686474_1687521_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|1687839_1688298_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|1688420_1689140_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|1689189_1689516_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|1689515_1690235_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|1690389_1691442_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|1691469_1691745_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|1691857_1692943_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|1693159_1694416_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|1697026_1697734_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|1698075_1698360_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_071525158.1|1698709_1698889_+	type VI secretion system protein	NA	NA	NA	NA	NA
WP_001141622.1|1700009_1700327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000768134.1|1700323_1700590_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|1700832_1701111_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 6
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	2642225	2732155	4781957	capsid,head,portal,tail,tRNA,protease,lysis,terminase,transposase,integrase,plate	Salmonella_phage(71.74%)	82	2672102:2672116	2732955:2732969
WP_000208240.1|2642225_2642756_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_000068796.1|2642847_2643843_-	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000841337.1|2643936_2644962_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000109394.1|2645116_2647315_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_000715284.1|2647518_2647731_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000792797.1|2647776_2648439_-	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000852811.1|2650884_2651202_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000197208.1|2651466_2652627_+	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000110811.1|2652629_2655062_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_001134817.1|2655788_2656913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000865256.1|2657048_2658605_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_010989256.1|2658848_2660108_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	6.0e-101
WP_000976816.1|2660104_2661211_+	alanine racemase	NA	NA	NA	NA	NA
WP_001090459.1|2661155_2662637_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000007507.1|2662915_2663806_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_000374033.1|2666256_2667360_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_000424865.1|2667371_2668034_-	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000274601.1|2668288_2669125_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001192092.1|2669285_2671019_-	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_001005544.1|2671220_2673872_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
2672102:2672116	attL	GCGCGCCGCCACGGC	NA	NA	NA	NA
WP_000800208.1|2674240_2675392_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_000935332.1|2675480_2676485_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_001575262.1|2676492_2677269_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_001230038.1|2677386_2678763_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001025919.1|2679046_2679964_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_001120789.1|2679946_2681347_-	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_000971958.1|2681545_2682181_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_000813838.1|2682196_2682556_+	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000186987.1|2682602_2683703_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000591414.1|2684076_2685921_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000201804.1|2685865_2686717_+	glutamate racemase	NA	NA	NA	NA	NA
WP_001541181.1|2692696_2693545_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000840996.1|2693651_2693990_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_000502114.1|2694097_2694556_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000972391.1|2696137_2696356_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001011760.1|2696446_2697547_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|2697543_2698029_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282793.1|2698025_2701103_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000763311.1|2701095_2701215_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|2701229_2701532_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|2701586_2702102_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|2702111_2703284_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|2703426_2703993_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_031625033.1|2704023_2704527_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	71.3	2.1e-57
WP_000805568.1|2704526_2705120_+|tail	tail assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|2705091_2705532_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_048667453.1|2705534_2706941_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	75.3	5.2e-154
WP_001086816.1|2706937_2707543_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|2707535_2708444_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|2708430_2708790_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|2708786_2709365_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|2709433_2709880_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|2709872_2710304_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_001080928.1|2710399_2710828_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|2710824_2711202_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001341072.1|2711203_2711677_-	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
WP_000171568.1|2711696_2711912_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|2711915_2712119_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|2712118_2712583_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|2712678_2713329_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|2713332_2714391_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216244.1|2714407_2715241_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|2715383_2717150_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|2717149_2718187_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|2718221_2718962_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|2718958_2719873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|2720486_2721365_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|2721473_2721773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|2721840_2722029_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|2722182_2724597_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|2724593_2725451_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|2725447_2725675_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|2725674_2725908_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|2725975_2726317_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|2726434_2726731_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|2726738_2727248_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|2727280_2727502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|2727627_2728197_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|2728212_2728404_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|2728592_2729645_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|2730270_2730369_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|2730508_2732155_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
2732955:2732969	attR	GCGCGCCGCCACGGC	NA	NA	NA	NA
>prophage 7
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	3000458	3094117	4781957	capsid,head,portal,tail,lysis,terminase,integrase,plate	Salmonella_phage(81.63%)	105	3001631:3001647	3099347:3099363
WP_000089603.1|3000458_3001610_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
3001631:3001647	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|3001706_3002174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|3002385_3003261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|3003448_3003811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|3003767_3004682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|3004700_3005441_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|3005419_3006106_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|3006141_3006642_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|3006651_3007221_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|3007240_3009331_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|3009327_3010086_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_001686573.1|3010304_3010577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|3010576_3010816_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|3010845_3011208_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|3011217_3011592_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|3011588_3012242_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|3012241_3013141_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|3013130_3014609_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989290.1|3014601_3015045_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|3018034_3018421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|3018575_3018968_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|3018964_3019933_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|3019947_3021378_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|3021710_3023216_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000993574.1|3023251_3023641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|3023864_3024107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|3024511_3025759_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_010989294.1|3025770_3026385_+	ParB-like nuclease domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	8.3e-56
WP_010989295.1|3026595_3027138_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|3028403_3029324_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_001020123.1|3030047_3030350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|3030445_3030826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|3031196_3031406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|3031423_3031876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|3031872_3032169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|3032246_3032705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|3032793_3034743_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|3034814_3035723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022216.1|3035796_3036696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989298.1|3036737_3037097_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|3037196_3037466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|3037597_3038872_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|3039091_3039469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|3039555_3039774_-	positive regulator of late gene transcription	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|3039841_3040942_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|3040938_3041424_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001282813.1|3041423_3044204_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000763315.1|3044196_3044316_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|3044330_3044633_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|3044687_3045203_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|3045212_3046385_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|3046487_3046706_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|3046919_3047642_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|3047839_3048247_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|3048253_3049873_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|3049869_3050475_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|3050467_3051376_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|3051362_3051722_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|3051718_3052297_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|3052365_3052812_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|3052804_3053236_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_001772475.1|3053331_3053757_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
WP_000731034.1|3053756_3054134_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|3054138_3054648_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|3054628_3054844_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|3054847_3055051_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|3055050_3055515_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|3055608_3056259_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|3056262_3057327_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|3057343_3058177_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|3058319_3060086_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|3060085_3061129_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|3061177_3061873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|3061892_3062957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|3062953_3064018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|3064027_3064246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|3064341_3064575_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|3064586_3064775_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000104130.1|3067328_3068189_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|3068185_3068770_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|3068766_3068994_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|3068993_3069227_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|3069294_3069636_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|3069599_3069800_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|3069807_3070317_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|3070349_3070592_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|3070708_3071341_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|3071344_3072370_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000902197.1|3072476_3072830_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
WP_001681810.1|3073476_3073734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681808.1|3073744_3074635_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000354257.1|3074634_3075381_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|3075682_3077653_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|3077672_3078977_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|3078999_3079695_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|3079720_3080515_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|3080524_3081592_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|3081636_3083373_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|3083372_3085868_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|3085891_3086938_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|3086940_3088218_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|3088462_3089002_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|3089855_3091367_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|3091350_3092940_+	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|3093103_3094117_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3099347:3099363	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 8
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	3246292	3256057	4781957	integrase,capsid	Enterobacteria_phage(50.0%)	10	3236827:3236840	3249958:3249971
3236827:3236840	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|3246292_3247783_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|3248253_3249519_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|3249581_3250658_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
3249958:3249971	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_010989310.1|3250654_3251728_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
WP_000493739.1|3251702_3252866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|3253141_3253708_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|3253723_3253963_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_010989311.1|3253966_3254827_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000556589.1|3255249_3255573_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
WP_015701354.1|3255505_3256057_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
>prophage 9
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	3912559	3918590	4781957		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|3912559_3912706_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|3912721_3912865_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|3913854_3915777_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|3915793_3916048_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|3916016_3916406_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|3917648_3918590_-	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 10
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	4153099	4162270	4781957	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|4153099_4154047_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|4154030_4154762_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|4154742_4154850_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|4154909_4155641_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272853.1|4155863_4157549_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_000598632.1|4157545_4158265_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|4158311_4158779_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|4158835_4159366_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|4159537_4159996_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|4160236_4162270_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 11
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	4238161	4248668	4781957		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|4238161_4239565_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|4239742_4240636_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|4241012_4242098_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|4242097_4242997_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|4243044_4243923_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|4243923_4244475_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|4244480_4245455_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|4245470_4246244_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|4246248_4247328_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|4247354_4248668_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 12
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	4354968	4362202	4781957		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|4354968_4355388_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|4355390_4356659_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|4357104_4357317_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|4357327_4357516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|4357776_4358961_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|4359611_4359923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|4360002_4360698_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|4360771_4362202_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 13
NZ_LT905090	Salmonella enterica subsp. enterica serovar Typhi strain ty3-243 genome assembly, chromosome: 2	4781957	4566055	4570467	4781957		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|4566055_4566469_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|4566485_4567214_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|4567405_4567948_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|4568095_4568473_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|4568545_4569355_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|4569851_4570016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497459.1|4570227_4570467_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
