The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	876273	968888	4772283	tail,head,terminase,capsid,portal,plate,lysis,integrase	Salmonella_phage(81.63%)	103	877446:877462	974118:974134
WP_000089603.1|876273_877425_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
877446:877462	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|877521_877989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|878200_879076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|879263_879626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|879582_880497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|880515_881256_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|881234_881921_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|881956_882457_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|882466_883036_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|883055_885146_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|885142_885901_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|886137_886392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|886391_886631_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|886660_887023_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|887032_887407_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|887403_888057_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|888056_888956_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|888945_890424_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|890410_890860_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|893850_894237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|894391_894784_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|894780_895749_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|895763_897194_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|897526_899032_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001283066.1|899270_900518_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|900502_901144_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|901354_901897_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|903162_904083_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|904806_905109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|905204_905585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|905955_906165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|906182_906635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|906631_906928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|907005_907464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|907552_909502_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|909573_910482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|910555_911455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|911529_911856_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|911955_912225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|912356_913631_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|913849_914227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|914313_914532_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|914599_915700_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|915696_916182_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|916181_918728_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|918954_919074_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|919088_919391_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|919445_919961_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|919970_921143_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|921245_921464_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|921677_922400_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|922597_923005_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|923011_924631_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|924627_925233_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|925225_926134_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|926120_926480_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|926476_927055_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|927123_927570_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|927562_927994_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_024131238.1|928089_928518_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|928514_928892_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|928896_929406_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|929386_929602_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|929605_929809_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|929808_930273_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|930366_931017_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|931020_932085_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|932101_932935_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|933077_934844_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|934843_935887_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|935935_936631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|936650_937715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|937711_938776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|938785_939004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|939099_939333_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|939344_939533_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|939700_942109_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|942099_942960_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|942956_943541_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|943537_943765_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|943764_943998_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|944065_944407_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|944370_944571_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|944578_945088_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|945120_945363_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|945479_946112_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|946115_947141_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|948247_948505_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|948515_949406_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|949405_950152_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|950453_952424_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|952443_953748_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|953770_954466_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|954491_955286_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|955295_956363_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632615.1|956407_958144_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|958143_960639_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|960662_961709_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|961711_962989_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|963233_963773_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|964626_966138_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|966121_967711_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|967874_968888_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
974118:974134	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 2
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	1121063	1128734	4772283	integrase	Enterobacteria_phage(33.33%)	7	1111598:1111611	1124729:1124742
1111598:1111611	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|1121063_1122554_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|1123024_1124290_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|1124352_1125429_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
1124729:1124742	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_000700163.1|1125425_1126484_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000493740.1|1126473_1127637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|1127912_1128479_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|1128494_1128734_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
>prophage 3
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	1787137	1793168	4772283		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|1787137_1787284_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|1787299_1787443_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|1788432_1790355_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|1790371_1790626_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|1790594_1790984_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|1792226_1793168_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 4
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	2027677	2036848	4772283	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|2027677_2028625_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|2028608_2029340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|2029320_2029428_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|2029487_2030219_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272852.1|2030441_2032127_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	6.9e-278
WP_000598634.1|2032123_2032843_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950423.1|2032889_2033357_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	91.0	1.4e-74
WP_001197951.1|2033413_2033944_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|2034115_2034574_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195339.1|2034814_2036848_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 5
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	2112739	2123246	4772283		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|2112739_2114143_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|2114320_2115214_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|2115590_2116676_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|2116675_2117575_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|2117622_2118501_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|2118501_2119053_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|2119058_2120033_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|2120048_2120822_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|2120826_2121906_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|2121932_2123246_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 6
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	2229546	2236780	4772283		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|2229546_2229966_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|2229968_2231237_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|2231682_2231895_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|2231905_2232094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2232354_2233539_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|2234189_2234501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|2234580_2235276_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|2235349_2236780_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	2440674	2445086	4772283		Escherichia_phage(50.0%)	6	NA	NA
WP_000281950.1|2440674_2441088_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|2441104_2441833_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|2442024_2442567_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|2442714_2443092_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|2443164_2443974_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_000497459.1|2444846_2445086_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
>prophage 8
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	2626122	2699247	4772283	tail,transposase,tRNA,protease,capsid,plate,integrase	Burkholderia_virus(39.02%)	87	2665142:2665158	2698155:2698171
WP_000168626.1|2626122_2627397_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|2628145_2628751_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|2628855_2630361_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|2630961_2631597_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|2631596_2632289_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|2632291_2632912_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|2632915_2633974_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|2633974_2635996_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|2635988_2636567_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|2636566_2637148_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|2637224_2637665_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|2637753_2637969_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|2638267_2638393_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|2638600_2639641_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|2639714_2640716_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|2641421_2642930_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|2643032_2644208_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|2644407_2646054_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|2646221_2647625_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|2647621_2648551_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|2648626_2649928_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|2650038_2651745_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|2651897_2653049_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|2653529_2654261_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|2654387_2654723_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|2654784_2656167_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|2656447_2657020_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_024131173.1|2657091_2657565_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_024131175.1|2657575_2658109_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_024131174.1|2658119_2658596_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|2658602_2659220_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_072074997.1|2659219_2660215_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	55.5	3.9e-63
WP_000852584.1|2660217_2660796_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2660788_2661892_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2661882_2662230_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2662286_2662814_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|2662810_2663965_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|2663952_2664165_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|2664164_2665049_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|2665048_2667514_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
2665142:2665158	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|2667607_2667745_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|2667689_2668025_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|2668122_2668404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|2668406_2668931_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|2668927_2670355_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|2670344_2670596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|2670595_2671060_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|2671059_2671506_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|2671507_2671846_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|2671855_2672809_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|2672823_2673939_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|2674153_2674612_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|2674614_2675436_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|2675416_2676913_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|2676912_2678454_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|2678504_2679050_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|2679049_2679361_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|2679360_2679687_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|2679683_2680334_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|2680317_2681046_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|2681048_2681399_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|2681642_2682239_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_001765083.1|2682234_2682666_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_000567456.1|2682675_2682840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|2682843_2684613_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|2684623_2685790_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|2685792_2686062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2686089_2686620_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|2686908_2687181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|2687190_2687493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2687489_2687873_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|2687880_2688081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2688077_2688761_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|2688757_2688988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|2688977_2689193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|2689185_2689635_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|2689606_2689996_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|2690177_2691122_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|2691648_2693178_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|2693188_2694577_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|2694751_2695786_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|2696202_2696565_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|2696551_2696881_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|2696915_2697737_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|2698004_2698256_-	acid shock protein	NA	NA	NA	NA	NA
2698155:2698171	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|2698649_2698832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502118.1|2698788_2699247_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	3142358	3220559	4772283	tail,transposase,protease,head,terminase,holin,plate	Salmonella_phage(70.0%)	92	NA	NA
WP_000938184.1|3142358_3143039_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|3143246_3143705_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|3144368_3145028_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|3145114_3145444_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|3145440_3145722_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|3146458_3146917_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|3148048_3149260_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|3149317_3149635_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|3149679_3150093_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|3150266_3150929_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|3151023_3151482_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|3151517_3153572_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|3153695_3154142_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|3154160_3156314_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|3156300_3156906_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|3157122_3157632_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|3157986_3159039_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|3159110_3159563_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|3159748_3161509_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|3161577_3162096_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|3162195_3162363_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|3162616_3163180_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|3163176_3164817_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|3164821_3166075_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|3166089_3167997_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|3168009_3170118_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|3170216_3171326_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|3171322_3171865_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|3172030_3173041_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|3173248_3175861_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|3176877_3177579_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|3178500_3179019_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|3179033_3180545_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|3180544_3181225_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|3181221_3182421_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|3182421_3182775_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|3183015_3183771_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|3183829_3184258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|3184257_3184989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|3185183_3185519_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|3185515_3186547_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|3186549_3186852_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|3186855_3187506_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|3187505_3189458_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|3189635_3190088_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|3190091_3190532_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|3190543_3191689_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|3191692_3192256_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|3192230_3192620_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|3192606_3193161_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|3193157_3193565_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|3193530_3193899_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|3193940_3194882_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|3194893_3195391_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|3195395_3196628_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|3196642_3197380_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|3197264_3198734_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|3198733_3200137_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|3200102_3200855_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|3200944_3201172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|3201268_3201646_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|3201688_3202228_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|3202224_3202839_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|3202838_3203120_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|3203106_3203496_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|3203712_3204162_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|3204297_3204423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|3204821_3205619_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|3205608_3205755_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|3205751_3206363_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|3206571_3207174_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|3207508_3207748_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|3207932_3208430_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|3208440_3208620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208073.1|3209516_3210038_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.2e-66
WP_000445792.1|3210041_3210515_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|3210514_3211039_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|3211035_3211383_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|3211393_3212143_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|3212145_3213129_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|3213213_3213588_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|3213553_3213790_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|3213919_3214324_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|3214612_3214813_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|3214903_3215200_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|3215205_3215991_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|3215987_3216668_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|3216745_3217810_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|3217806_3218688_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|3218693_3218933_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|3218973_3219222_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|3219266_3220559_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 10
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	3291684	3298996	4772283	protease,integrase	Ralstonia_phage(16.67%)	7	3286553:3286567	3297732:3297746
3286553:3286567	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|3291684_3292062_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|3292223_3292421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|3292632_3294909_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|3294939_3295260_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3295583_3295805_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|3295934_3297881_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
3297732:3297746	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|3297877_3298996_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 11
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	3954592	4008386	4772283	tRNA,tail,integrase	Enterobacteria_phage(33.33%)	43	3976412:3976427	3987769:3987784
WP_000469802.1|3954592_3955360_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3955404_3955953_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3955971_3956220_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3956563_3957925_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3958090_3958882_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3958901_3960188_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3960308_3960866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3960947_3961538_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3961661_3962540_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3962625_3964287_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3964435_3964774_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000884725.1|3964939_3965230_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3965219_3965696_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3965845_3966328_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237648.1|3966947_3977822_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
3976412:3976427	attL	CGCCAACACCACCGGC	NA	NA	NA	NA
WP_000533850.1|3977885_3979295_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|3979291_3981448_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3981479_3982643_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000124721.1|3983261_3984461_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.6	4.8e-108
WP_001269066.1|3984495_3985242_-	hypothetical protein	NA	S5W9H2	Leptospira_phage	42.6	3.0e-07
WP_000868779.1|3985238_3986060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000446132.1|3986379_3986952_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	97.3	2.2e-95
WP_021038238.1|3987025_3987526_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_001283036.1|3987522_3988257_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	99.2	1.2e-130
3987769:3987784	attR	GCCGGTGGTGTTGGCG	NA	NA	NA	NA
WP_001149156.1|3988808_3989075_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	98.9	6.3e-45
WP_000980224.1|3989071_3989662_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	90.3	5.3e-60
WP_001244665.1|3989654_3989942_+	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
WP_000459302.1|3989934_3990390_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
WP_000856729.1|3990525_3990846_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783673.1|3990860_3993194_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	99.0	0.0e+00
WP_000151542.1|3993817_3994591_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|3994559_3994733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|3994994_3995213_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3995303_3996404_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3996400_3996886_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3996882_3999960_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3999952_4000072_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|4000086_4000389_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|4000443_4000959_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|4000968_4002141_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|4002283_4002850_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|4003533_4004649_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|4004729_4008386_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 12
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	4325821	4369003	4772283	transposase,tRNA,protease,bacteriocin,integrase	Bacillus_virus(25.0%)	47	4315937:4315950	4374934:4374947
4315937:4315950	attL	TTCACAACGCCAGC	NA	NA	NA	NA
WP_001204111.1|4325821_4326280_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|4326469_4327549_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|4327650_4328814_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|4328835_4329882_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|4330255_4330681_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|4330706_4331285_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|4331285_4331993_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|4331980_4332658_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|4332651_4333308_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|4333412_4333871_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|4334059_4336051_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|4336326_4337085_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|4337185_4338106_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|4338333_4340310_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|4340318_4340450_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|4340583_4340748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|4340744_4341044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|4341099_4342254_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|4342746_4344141_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|4344219_4344717_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|4344812_4345520_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|4345596_4346328_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|4346347_4347295_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|4347510_4348074_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|4348073_4348490_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|4348536_4349223_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|4349352_4350333_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|4350350_4351055_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|4351073_4351640_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|4351636_4351927_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|4351934_4352528_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|4352520_4353657_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|4353747_4354755_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|4354887_4355934_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|4356252_4356711_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|4356833_4357553_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|4357602_4357929_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|4357928_4358648_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|4358802_4359855_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|4359882_4360158_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|4360270_4361356_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|4361572_4362829_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|4365439_4366147_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|4366488_4366773_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_014341481.1|4366957_4367302_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_001141622.1|4368422_4368740_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|4368736_4369003_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
4374934:4374947	attR	TTCACAACGCCAGC	NA	NA	NA	NA
>prophage 13
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	4772283	4746842	4772283	4772283	tail,terminase,head,capsid,portal,plate,lysis,integrase	Salmonella_phage(87.1%)	36	4741806:4741820	4753972:4753986
4741806:4741820	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4746842_4748489_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4748628_4748727_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4749352_4750405_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4750593_4750785_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4750800_4751370_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4751495_4751717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4751749_4752259_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4752266_4752563_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4752680_4753022_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4753089_4753323_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4753322_4753550_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4753546_4754404_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4753972:4753986	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4754400_4756815_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4756968_4757157_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4757224_4757524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4757632_4758511_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4759124_4760039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4760035_4760776_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4760810_4761848_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4761847_4763614_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4763756_4764590_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4764606_4765665_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4765668_4766319_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4766414_4766879_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4766878_4767082_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4767085_4767301_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4767281_4767794_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4767795_4768173_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4768169_4768598_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4768693_4769125_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4769117_4769564_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4769632_4770211_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4770207_4770567_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4770553_4771462_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4771454_4772060_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104778.1|4772056_4772283_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	93.3	1.7e-30
