The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	739050	782753	4807646	bacteriocin,transposase,tRNA,protease	Acinetobacter_phage(25.0%)	47	NA	NA
WP_000421096.1|739050_739329_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|739571_739838_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|739834_740152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071525158.1|741272_741452_-	type VI secretion system protein	NA	NA	NA	NA	NA
WP_001681938.1|741801_742086_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|742427_743135_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|745745_747002_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|747218_748304_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|748416_748692_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|748719_749772_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|749926_750646_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|750645_750972_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|751021_751741_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|751863_752322_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|752640_753687_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|753819_754827_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|754917_756054_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|756046_756640_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|756647_756938_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|756934_757501_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|757519_758224_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|758241_759222_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|759351_760038_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|760084_760501_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|760500_761064_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|761279_762227_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|762246_762978_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000286121.1|763054_763762_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|763857_764355_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|764433_765828_-	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_001062140.1|766320_767475_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|767530_767830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|768124_768256_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|768264_770241_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|770468_771389_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|771489_772248_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|772523_774515_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|774703_775162_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000956919.1|775266_775923_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000367758.1|775916_776600_-	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000553254.1|776581_777289_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000124001.1|777289_777868_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000218564.1|777893_778319_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_000218338.1|778692_779739_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000111274.1|779760_780924_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000034386.1|781025_782105_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_001204111.1|782294_782753_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	1047593	1113584	4807646	tRNA,tail	Salmonella_phage(41.18%)	54	NA	NA
WP_000047238.1|1047593_1050224_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1050458_1050644_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1052042_1052609_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1052605_1053031_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1053107_1054664_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1054813_1055329_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1055674_1057045_+	glycoporin	NA	NA	NA	NA	NA
WP_001187289.1|1057093_1058632_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1058648_1059821_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1059947_1060478_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1060974_1062159_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1062323_1063319_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1063388_1064453_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1066001_1066961_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1066971_1069116_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|1069088_1069499_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|1069495_1069741_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_010989219.1|1069839_1070016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000209805.1|1070012_1070444_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1071950_1072277_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1072438_1072789_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1072823_1073273_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1073971_1074373_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|1074721_1075249_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1075258_1075558_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1075740_1075899_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1076469_1077147_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_001095643.1|1078718_1080002_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1080016_1081465_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1081486_1082755_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_001782268.1|1082780_1083767_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1084060_1085575_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1085585_1086020_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|1086031_1086841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1086995_1087670_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1087656_1089072_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1089312_1090218_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1090939_1091836_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1092129_1093059_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1093575_1094628_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|1095649_1097830_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1097889_1098807_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1098838_1100083_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1100192_1103849_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1103929_1105045_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000905046.1|1105728_1106295_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1106437_1107610_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1107619_1108135_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|1108189_1108492_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1108506_1108626_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|1108618_1111696_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|1111692_1112178_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|1112174_1113275_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1113365_1113584_+	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 3
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	1800010	1807322	4807646	integrase,protease	Dickeya_phage(16.67%)	7	1801261:1801275	1812439:1812453
WP_001201759.1|1800010_1801129_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1801125_1803072_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1801261:1801275	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1803201_1803423_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1803746_1804067_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1804097_1806374_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1806585_1806783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1806944_1807322_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1812439:1812453	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 4
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	1878455	1952555	4807646	tail,integrase,holin,head,transposase,protease,terminase	Salmonella_phage(75.41%)	91	1860523:1860542	1931128:1931147
1860523:1860542	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
WP_001262313.1|1878455_1879748_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1879792_1880041_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1880081_1880321_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1880326_1881208_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1881204_1882269_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1882346_1883027_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1883023_1883809_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1883814_1884111_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1884201_1884402_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1884690_1885095_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1885224_1885461_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1885426_1885801_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1885885_1886869_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1886871_1887621_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1887631_1887979_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1887975_1888500_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1888499_1888973_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1888976_1889549_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_001220318.1|1889642_1889909_+	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
WP_010989139.1|1889990_1890152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000509711.1|1890394_1890574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1890584_1891082_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1891266_1891506_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_001574100.1|1891495_1891801_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
WP_000929790.1|1891840_1892443_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1892651_1893263_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1893259_1893406_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1893395_1894193_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1894591_1894717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1894852_1895302_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1895518_1895908_+	membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1895894_1896176_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1896175_1896790_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000495544.1|1897367_1897745_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1897841_1898069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|1898158_1898911_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|1898876_1900280_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|1900279_1901749_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|1901633_1902371_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1902385_1903618_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1903622_1904120_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1904131_1905073_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1905114_1905483_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1905448_1905856_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1905852_1906407_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1906393_1906783_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1906757_1907321_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1907324_1908470_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|1908481_1908922_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|1908925_1909378_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|1909555_1911508_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|1911507_1912158_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1912161_1912464_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1912466_1913498_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1913494_1913830_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1914024_1914756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1914755_1915184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1915242_1915998_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_000564971.1|1916085_1916223_+	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
WP_001270647.1|1916238_1916592_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1916592_1917792_+	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1917788_1918469_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1918468_1919980_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|1919994_1920513_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_000480169.1|1921434_1922136_-	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000497443.1|1922448_1922727_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
WP_000193884.1|1923152_1925765_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000291724.1|1925972_1926983_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1927148_1927691_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224084.1|1927687_1928797_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086472.1|1928895_1931004_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000053045.1|1931016_1932924_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1931128:1931147	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
WP_000333152.1|1932938_1934192_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433416.1|1934196_1935837_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1935833_1936397_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001764860.1|1936650_1936818_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1936917_1937436_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156455.1|1937504_1939265_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877174.1|1939450_1939903_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_010989142.1|1939974_1941027_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1941381_1941891_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202371.1|1942107_1942713_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950867.1|1942699_1944853_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1944871_1945318_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420526.1|1945441_1947496_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_000424187.1|1947531_1947990_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1948084_1948747_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000975203.1|1948917_1949334_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1949378_1949696_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140485.1|1949753_1950965_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000502118.1|1952096_1952555_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	2398585	2472062	4807646	tail,integrase,plate,head,transposase,tRNA,protease	Burkholderia_virus(42.11%)	85	2388915:2388930	2444668:2444683
2388915:2388930	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000502118.1|2398585_2399044_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_001766314.1|2399575_2399827_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2400095_2400917_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2400951_2401281_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2401267_2401630_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001539987.1|2401741_2401912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001118268.1|2402046_2403081_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2403255_2404644_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2404654_2406184_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2406710_2407655_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2407836_2408226_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000988475.1|2408197_2408650_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
WP_010989166.1|2408639_2408855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2408844_2409075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2409071_2409755_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000132655.1|2409751_2409967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2409959_2410343_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2410339_2410642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2410651_2410924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2411212_2411743_-	host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2411770_2412040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2412042_2413209_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|2413219_2414989_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_124682070.1|2415166_2415505_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.1	1.9e-22
WP_100208317.1|2415593_2416190_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|2416433_2416784_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|2416786_2417515_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|2417498_2418149_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2418145_2418472_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2418471_2418783_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2418782_2419328_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000167502.1|2419324_2420920_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
WP_000090679.1|2420919_2422416_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|2422396_2423218_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|2423220_2423679_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2423893_2425009_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|2425023_2425977_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|2425986_2426325_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2426326_2426773_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2426772_2427237_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_001789770.1|2427233_2427488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2427477_2428905_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000034292.1|2428904_2429426_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
WP_000110118.1|2429428_2429710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2429807_2430143_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2430087_2430225_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2430318_2432784_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2432783_2433668_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_010989167.1|2433664_2433880_+	membrane protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2433867_2435022_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2435018_2435546_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2435602_2435950_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2435940_2437044_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|2437036_2437615_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_094541854.1|2438581_2439049_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	51.7	1.2e-35
WP_024134057.1|2440632_2441094_-|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_001165548.1|2441165_2441738_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2442018_2443401_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2443462_2443798_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|2443924_2444656_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000924582.1|2444720_2445020_-	hypothetical protein	NA	NA	NA	NA	NA
2444668:2444683	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000824321.1|2445136_2446288_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_000928668.1|2446440_2448147_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001681605.1|2448257_2449559_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2449634_2450564_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2450560_2451964_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2452131_2453778_-	fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2453977_2455153_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2455255_2456764_+	YdgA family protein	NA	NA	NA	NA	NA
WP_077949083.1|2456884_2457103_+	PTS maltose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000565566.1|2457469_2458471_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_021013203.1|2458544_2459660_-	oxidoreductase	NA	NA	NA	NA	NA
WP_000361450.1|2459761_2459917_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2460215_2460431_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2460519_2460960_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2461036_2461618_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2461617_2462196_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2462188_2464210_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2464210_2465269_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2465272_2465893_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2465895_2466588_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|2466587_2467223_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2467823_2469329_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2469433_2470039_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2470787_2472062_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 6
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	2653097	2657509	4807646		Escherichia_phage(50.0%)	7	NA	NA
WP_000497459.1|2653097_2653337_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
WP_001036668.1|2653548_2653713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001529135.1|2654209_2655019_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2655091_2655469_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2655616_2656159_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2656350_2657079_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2657095_2657509_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 7
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	2861362	2868596	4807646		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2861362_2862793_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2862866_2863562_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2863641_2863953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2864603_2865788_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2866048_2866237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2866247_2866460_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2866905_2868174_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2868176_2868596_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 8
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	2974896	2985403	4807646		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|2974896_2976210_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|2976236_2977316_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|2977320_2978094_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|2978109_2979084_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|2979089_2979641_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|2979641_2980520_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|2980567_2981467_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|2981466_2982552_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|2982928_2983822_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|2983999_2985403_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 9
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	3061294	3070465	4807646	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3061294_3063328_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3063568_3064027_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3064198_3064729_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3064785_3065253_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|3065299_3066019_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272853.1|3066015_3067701_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_001240415.1|3067923_3068655_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3068714_3068822_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3068802_3069534_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3069517_3070465_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 10
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	3304974	3311005	4807646		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3304974_3305916_+	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3307158_3307548_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3307516_3307771_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3307787_3309710_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3310699_3310843_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3310858_3311005_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 11
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	3967226	3976991	4807646	capsid,integrase	Enterobacteria_phage(50.0%)	10	3963797:3963810	3975200:3975213
3963797:3963810	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_015701354.1|3967226_3967778_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_000556589.1|3967710_3968034_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
WP_010989311.1|3968456_3969317_+|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000468230.1|3969320_3969560_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_000214423.1|3969575_3970142_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000493739.1|3970417_3971581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989310.1|3971555_3972629_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
WP_000573583.1|3972625_3973702_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|3973764_3975030_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|3975500_3976991_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
3975200:3975213	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 12
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	4115954	4190493	4807646	tail,lysis,capsid,integrase,portal,plate,head,terminase	Salmonella_phage(83.33%)	80	4146292:4146307	4169298:4169313
WP_000954536.1|4115954_4117214_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4117524_4118808_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4119788_4120571_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_000193665.1|4121427_4121649_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4121645_4122107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4122653_4124327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989300.1|4124407_4126693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000905294.1|4126984_4127248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4127329_4127782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000622308.1|4127961_4128450_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4128446_4128740_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4129166_4130180_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4130343_4131933_-	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|4131916_4133428_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|4134281_4134821_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4135065_4136343_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4136345_4137392_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|4137415_4139911_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000632616.1|4139910_4141647_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4141691_4142759_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4142768_4143563_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4143588_4144284_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4144306_4145611_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_050158335.1|4145630_4147604_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
4146292:4146307	attL	CGCTGTGCGCTGTCGG	NA	NA	NA	NA
WP_000354257.1|4147905_4148652_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4148651_4149542_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681810.1|4149552_4149810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000902197.1|4150456_4150810_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
WP_000027757.1|4150916_4151942_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4151945_4152578_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4152694_4152937_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4152969_4153479_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4153486_4153687_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4153650_4153992_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4154059_4154293_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4154292_4154520_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4154516_4155101_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4155097_4155958_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001154438.1|4158511_4158700_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4158711_4158945_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4159040_4159259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4159268_4160333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4160329_4161394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4161413_4162109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4162157_4163201_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4163200_4164967_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4165109_4165943_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|4165959_4167024_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|4167027_4167678_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4167771_4168236_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4168235_4168439_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4168442_4168658_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4168638_4169148_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4169152_4169530_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
4169298:4169313	attR	CGCTGTGCGCTGTCGG	NA	NA	NA	NA
WP_001772475.1|4169529_4169955_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
WP_001039966.1|4170050_4170482_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_000343944.1|4170474_4170921_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4170989_4171568_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4171564_4171924_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|4171910_4172819_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|4172811_4173417_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|4173413_4175033_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|4175039_4175447_+|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4175644_4176367_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4176580_4176799_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4176901_4178074_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4178083_4178599_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|4178653_4178956_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4178970_4179090_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001282813.1|4179082_4181863_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000980405.1|4181862_4182348_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|4182344_4183445_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|4183512_4183731_+	positive regulator of late gene transcription	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|4183817_4184195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4184414_4185689_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4185820_4186090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989298.1|4186189_4186549_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022216.1|4186590_4187490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4187563_4188472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4188543_4190493_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
>prophage 13
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	4454507	4471916	4807646	transposase,integrase	Escherichia_phage(33.33%)	17	4448944:4449003	4473444:4474211
4448944:4449003	attL	GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC	NA	NA	NA	NA
WP_000935452.1|4454507_4455812_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_001067855.1|4455858_4456563_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000240536.1|4457318_4458170_+	replication protein	NA	NA	NA	NA	NA
WP_001043265.1|4458477_4459293_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_024261901.1|4459353_4460157_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	4.9e-24
WP_000480968.1|4460156_4460993_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001067855.1|4461053_4461758_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001387387.1|4461804_4462206_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000027057.1|4462355_4463216_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001067855.1|4463715_4464420_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000259031.1|4464653_4465493_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA	NA
WP_000679427.1|4465486_4465834_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000703418.1|4466063_4466537_-	trimethoprim-resistant dihydrofolate reductase DfrA7	NA	A0A1B2IBQ4	Erwinia_phage	32.0	8.4e-16
WP_000845048.1|4466694_4467708_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_000454193.1|4467910_4468261_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000147567.1|4468386_4468947_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_001138064.1|4468949_4471916_+|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
4473444:4474211	attR	GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACCGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC	NA	NA	NA	NA
>prophage 14
NZ_LT904894	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, chromosome: 1	4807646	4515630	4605578	4807646	tail,lysis,capsid,integrase,portal,plate,head,transposase,tRNA,protease,terminase	Salmonella_phage(75.0%)	80	4510594:4510608	4522760:4522774
4510594:4510608	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4515630_4517277_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4517416_4517515_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4518140_4519193_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4519381_4519573_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4519588_4520158_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4520283_4520505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4520537_4521047_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4521054_4521351_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4521468_4521810_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4521877_4522111_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4522110_4522338_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4522334_4523192_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4522760:4522774	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4523188_4525603_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4525756_4525945_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4526012_4526312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4526420_4527299_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4527912_4528827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4528823_4529564_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4529598_4530636_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4530635_4532402_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_048664253.1|4532544_4533378_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.3	3.4e-121
WP_000742518.1|4533394_4534453_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4534456_4535107_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4535202_4535667_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4535666_4535870_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4535873_4536089_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001341072.1|4536108_4536582_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
WP_000727853.1|4536583_4536961_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4536957_4537386_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4537481_4537913_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4537905_4538352_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4538420_4538999_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4538995_4539355_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4539341_4540250_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4540242_4540848_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_094541859.1|4540844_4541939_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	79.2	1.5e-153
WP_001174915.1|4542946_4543387_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_000905046.1|4543814_4544381_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|4544523_4545696_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|4545705_4546221_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|4546275_4546578_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4546592_4546712_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|4546704_4549782_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|4549778_4550264_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4550260_4551361_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4551451_4551670_+	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4553251_4553710_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|4553817_4554156_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|4554262_4555111_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000201804.1|4561086_4561938_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000591414.1|4561882_4563727_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000186987.1|4564100_4565201_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000813838.1|4565247_4565607_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000971958.1|4565622_4566258_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_001120789.1|4566456_4567857_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_001025919.1|4567839_4568757_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_001230038.1|4569040_4570417_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001575262.1|4570534_4571311_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000935332.1|4571318_4572323_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_000800208.1|4572411_4573563_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_001005544.1|4573931_4576583_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_001192092.1|4576784_4578518_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_000274601.1|4578678_4579515_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000424865.1|4579769_4580432_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000108110.1|4581652_4583833_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_000007507.1|4583997_4584888_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_001090459.1|4585166_4586648_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000976816.1|4586592_4587699_-	alanine racemase	NA	NA	NA	NA	NA
WP_010989256.1|4587695_4588955_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	6.0e-101
WP_000865256.1|4589198_4590755_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001134817.1|4590890_4592015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110811.1|4592741_4595174_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_000197208.1|4595176_4596337_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000852811.1|4596601_4596919_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000792797.1|4599364_4600027_+	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000715284.1|4600072_4600285_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000109394.1|4600488_4602687_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_000841337.1|4602841_4603867_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000068796.1|4603960_4604956_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000208240.1|4605047_4605578_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 1
NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	106704	0	78262	106704	tail,terminase	Salmonella_phage(94.44%)	94	NA	NA
WP_000174806.1|0_1086_+	exonuclease SbcCD subunit D	NA	J9Q7S9	Salmonella_phage	98.9	2.7e-206
WP_000107766.1|1082_1319_+	hypothetical protein	NA	J9Q7H1	Salmonella_phage	98.4	1.1e-29
WP_000670362.1|1315_3232_+	AAA family ATPase	NA	J9Q741	Salmonella_phage	98.6	0.0e+00
WP_000009516.1|3221_3968_+	hypothetical protein	NA	J9Q6J5	Salmonella_phage	98.0	4.4e-136
WP_000047571.1|3980_4550_+	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	99.5	1.7e-103
WP_000623686.1|4627_6943_+	ribonucleoside-diphosphate reductase subunit alpha	NA	J9Q7T0	Salmonella_phage	99.7	0.0e+00
WP_011011111.1|7050_8193_+	ribonucleotide-diphosphate reductase subunit beta	NA	J9Q7H3	Salmonella_phage	99.5	2.4e-218
WP_000673231.1|8275_9205_+	hypothetical protein	NA	J9Q742	Salmonella_phage	99.0	3.8e-161
WP_011011110.1|9320_10436_+	thymidylate synthase	NA	J9Q6J6	Salmonella_phage	98.1	7.6e-217
WP_006812548.1|10437_10851_+	hypothetical protein	NA	J9Q7Z8	Salmonella_phage	97.8	4.7e-71
WP_000781812.1|10847_11324_+	dihydrofolate reductase	NA	J9Q7T1	Salmonella_phage	100.0	1.4e-90
WP_000386471.1|11323_11968_+	AAA family ATPase	NA	J9Q7H4	Salmonella_phage	100.0	5.2e-117
WP_000564632.1|12031_12451_+	hypothetical protein	NA	J9Q743	Salmonella_phage	98.6	2.9e-68
WP_000208226.1|12460_13018_+	3'-5' exonuclease	NA	J9Q6J8	Salmonella_phage	99.5	7.0e-102
WP_011011109.1|13062_13989_+	hypothetical protein	NA	J9Q7Z9	Salmonella_phage	85.4	4.1e-107
WP_000559567.1|14174_14768_+	phage N-6-adenine-methyltransferase	NA	J9Q7T2	Salmonella_phage	99.5	4.6e-112
WP_000262979.1|14970_15201_+	hypothetical protein	NA	J9Q7H5	Salmonella_phage	100.0	2.1e-36
WP_011011108.1|15786_16395_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	99.5	2.2e-117
WP_024134091.1|16537_17032_+	hypothetical protein	NA	J9Q6J9	Salmonella_phage	96.3	1.9e-79
WP_000872126.1|17041_17230_+	hypothetical protein	NA	J9Q800	Salmonella_phage	100.0	1.2e-26
WP_000462606.1|17338_18181_+	hypothetical protein	NA	J9Q7T3	Salmonella_phage	71.1	2.1e-70
WP_000333240.1|18289_18862_+	hypothetical protein	NA	J9Q7H6	Salmonella_phage	98.9	8.2e-98
WP_011011107.1|18985_20689_+	DUF4942 domain-containing protein	NA	J9Q747	Salmonella_phage	98.9	0.0e+00
WP_001291673.1|20747_21437_+	hypothetical protein	NA	J9Q6K2	Salmonella_phage	98.3	6.1e-124
WP_000766011.1|21717_22089_+	hypothetical protein	NA	J9Q7T4	Salmonella_phage	100.0	3.2e-63
WP_000086990.1|22180_22822_+	HD domain-containing protein	NA	J9Q7H7	Salmonella_phage	100.0	9.7e-116
WP_000861921.1|22818_23361_+	hypothetical protein	NA	J9Q748	Salmonella_phage	93.1	2.6e-93
WP_011011105.1|23369_23681_+	hypothetical protein	NA	A0A1B5FPC7	Escherichia_phage	56.9	3.0e-14
WP_000218758.1|23677_23965_+	hypothetical protein	NA	A5VWB2	Enterobacteria_phage	58.8	9.9e-28
WP_000860613.1|24025_24229_-	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	95.5	1.5e-30
WP_011011104.1|24402_24684_+	hypothetical protein	NA	J9Q7T5	Salmonella_phage	71.6	3.2e-31
WP_000916329.1|24768_25086_+	hypothetical protein	NA	J9Q750	Salmonella_phage	80.0	8.1e-47
WP_000132517.1|25095_26286_+	hypothetical protein	NA	J9Q803	Salmonella_phage	54.6	5.4e-120
WP_011011103.1|27722_27968_-	hypothetical protein	NA	J9Q751	Salmonella_phage	92.5	5.8e-37
WP_000276519.1|28110_28326_+	hypothetical protein	NA	J9Q6K7	Salmonella_phage	95.8	4.5e-33
WP_000594283.1|28336_28555_+	hypothetical protein	NA	J9Q804	Salmonella_phage	98.6	6.4e-35
WP_000559556.1|28649_28964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000786235.1|29040_29352_+	hypothetical protein	NA	J9Q7T7	Salmonella_phage	92.2	1.1e-45
WP_000218787.1|29480_29873_+	hypothetical protein	NA	J9Q7I1	Salmonella_phage	65.4	1.7e-41
WP_011011102.1|29993_30281_+	hypothetical protein	NA	J9Q753	Salmonella_phage	94.6	1.5e-47
WP_024134090.1|30240_30474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001009195.1|30486_30969_+	hypothetical protein	NA	J9Q805	Salmonella_phage	96.9	5.5e-87
WP_000234274.1|31600_31828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072873.1|31912_32563_-	hypothetical protein	NA	J9Q754	Salmonella_phage	100.0	1.4e-114
WP_011011101.1|32885_33194_-	periplasmic protein	NA	NA	NA	NA	NA
WP_000182009.1|33197_33725_-	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	96.6	4.1e-80
WP_000683475.1|33729_34152_-	hypothetical protein	NA	J9Q806	Salmonella_phage	85.7	8.2e-63
WP_001291547.1|34211_34490_-	hypothetical protein	NA	J9Q7T9	Salmonella_phage	98.9	3.4e-41
WP_000218382.1|34492_36052_-	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.4	5.7e-295
WP_011011100.1|36116_36815_+	ParB N-terminal domain-containing protein	NA	J9Q756	Salmonella_phage	99.6	1.9e-125
WP_000164561.1|36814_37483_+	ParB N-terminal domain-containing protein	NA	J9Q6L1	Salmonella_phage	99.5	1.1e-114
WP_000049963.1|37479_38118_+	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	99.1	5.5e-111
WP_001113021.1|38110_38365_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	98.8	4.1e-41
WP_011011099.1|38361_39261_+	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.3	4.0e-168
WP_000176291.1|39270_39537_+	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
WP_050187267.1|39732_40374_+	hypothetical protein	NA	J9Q6D4	Salmonella_phage	99.1	1.2e-108
WP_001007302.1|40376_41633_+|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	99.8	5.3e-251
WP_000423989.1|41666_43241_+	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.0	3.2e-301
WP_001055287.1|43263_44160_+	hypothetical protein	NA	J9Q7F4	Salmonella_phage	96.6	5.7e-146
WP_001130336.1|44186_45062_+	hypothetical protein	NA	J9Q710	Salmonella_phage	100.0	3.8e-163
WP_001115046.1|45136_46060_+	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	100.0	3.3e-157
WP_000801184.1|46103_46538_+	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	100.0	2.1e-74
WP_000057119.1|46537_47371_+	hypothetical protein	NA	J9Q7R2	Salmonella_phage	100.0	2.6e-153
WP_001027662.1|47468_47813_+	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
WP_000523626.1|47803_48277_+	hypothetical protein	NA	J9Q711	Salmonella_phage	100.0	2.3e-82
WP_000469441.1|48278_48662_+	hypothetical protein	NA	J9Q6D8	Salmonella_phage	100.0	1.7e-67
WP_000072376.1|48736_49483_+	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	96.8	7.8e-125
WP_000163862.1|49542_49860_+	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
WP_002228782.1|49940_50210_+	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	8.4e-37
WP_050187280.1|50217_54801_+	tape measure protein	NA	J9Q712	Salmonella_phage	92.8	0.0e+00
WP_000440566.1|54842_55178_+|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
WP_072075016.1|55234_55966_+|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	3.3e-136
WP_000528167.1|55958_56756_+|tail	tail protein	tail	J9Q7R4	Salmonella_phage	95.8	1.2e-155
WP_050187278.1|56743_57331_+|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	91.8	2.5e-102
WP_011011097.1|57345_61734_+	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	86.7	0.0e+00
WP_048666987.1|61816_64369_+|tail	tail fiber domain-containing protein	tail	A0A0A0YQM3	Citrobacter_virus	52.5	1.4e-152
WP_000064174.1|64483_64807_+	hypothetical protein	NA	J9Q6E7	Salmonella_phage	97.2	2.7e-50
WP_000856755.1|64820_65513_+	hypothetical protein	NA	J9Q7Y7	Salmonella_phage	95.7	1.1e-125
WP_011011096.1|65581_65926_+	hypothetical protein	NA	J9Q7G2	Salmonella_phage	83.6	5.9e-27
WP_001287064.1|65976_66528_-	hypothetical protein	NA	A0A2H4J5U3	uncultured_Caudovirales_phage	39.8	7.8e-29
WP_000062815.1|67522_67882_+	hypothetical protein	NA	J9Q7G3	Salmonella_phage	100.0	2.3e-45
WP_000966077.1|67930_68686_+	DUF2971 domain-containing protein	NA	J9Q7Y9	Salmonella_phage	43.0	3.2e-57
WP_001238819.1|68755_69811_-	hypothetical protein	NA	A0A2I7RNF6	Vibrio_phage	42.6	5.1e-61
WP_000078184.1|70088_70814_+	hypothetical protein	NA	J9Q7R8	Salmonella_phage	98.3	2.4e-139
WP_011011095.1|70874_72215_+	AAA family ATPase	NA	J9Q7G4	Salmonella_phage	99.6	3.8e-247
WP_011011094.1|72277_73489_+	hypothetical protein	NA	J9Q720	Salmonella_phage	96.5	6.6e-214
WP_000209842.1|73490_74543_-	hypothetical protein	NA	J9Q6F5	Salmonella_phage	56.7	1.9e-92
WP_000642525.1|74726_75521_+	hypothetical protein	NA	J9Q7Z0	Salmonella_phage	96.2	4.9e-141
WP_011011093.1|75821_76079_+	hypothetical protein	NA	J9Q7R9	Salmonella_phage	92.9	4.9e-34
WP_000413053.1|76113_77436_+	DNA ligase	NA	J9Q7G5	Salmonella_phage	98.4	5.8e-256
WP_000901956.1|77435_77612_+	hypothetical protein	NA	J9Q729	Salmonella_phage	96.6	2.6e-23
WP_011011092.1|77601_77808_+	hypothetical protein	NA	J9Q6I3	Salmonella_phage	98.5	8.1e-32
WP_044790586.1|77807_77960_+	hypothetical protein	NA	J9Q7Z1	Salmonella_phage	96.0	7.6e-19
WP_000067984.1|77956_78262_+	hypothetical protein	NA	J9Q7S1	Salmonella_phage	98.0	9.2e-48
>prophage 2
NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	106704	82080	106476	106704	integrase	Salmonella_phage(80.0%)	30	78831:78844	90875:90888
78831:78844	attL	AATGATTCCATACA	NA	NA	NA	NA
WP_011011090.1|82080_82914_+	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	65.1	2.4e-90
WP_000159906.1|82923_83127_+	hypothetical protein	NA	A0A0B6VT64	Edwardsiella_phage	49.2	4.4e-06
WP_000131231.1|83142_83523_+	hypothetical protein	NA	Q716B1	Shigella_phage	67.2	6.7e-40
WP_000869626.1|83522_83768_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	41.6	2.1e-10
WP_001117719.1|83932_84424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000798892.1|84684_85791_+|integrase	site-specific integrase	integrase	A0A1P8DTG6	Proteus_phage	32.2	2.1e-25
WP_000224608.1|85782_86169_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000790461.1|86430_86643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044790587.1|86752_89110_+	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	90.7	0.0e+00
WP_000127343.1|89206_90442_+	AAA domain-containing protein	NA	J9Q733	Salmonella_phage	99.5	1.8e-238
WP_000645855.1|90622_94141_+	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	99.1	0.0e+00
90875:90888	attR	TGTATGGAATCATT	NA	NA	NA	NA
WP_001031298.1|94137_94581_+	hypothetical protein	NA	J9Q7S4	Salmonella_phage	97.9	3.0e-71
WP_000459729.1|94674_95265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000102109.1|95510_95942_+	hypothetical protein	NA	J9Q6I8	Salmonella_phage	100.0	4.0e-73
WP_000045710.1|96061_97090_+	hypothetical protein	NA	J9Q7Z3	Salmonella_phage	98.8	1.1e-164
WP_001108398.1|97150_98095_+	exonuclease	NA	J9Q7S6	Salmonella_phage	99.4	6.8e-182
WP_000920226.1|98094_98361_+	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
WP_001051805.1|98363_99440_+	recombinase	NA	J9Q736	Salmonella_phage	99.7	5.5e-204
WP_000589750.1|99531_99732_+	hypothetical protein	NA	J9Q6J0	Salmonella_phage	93.9	9.3e-25
WP_000715582.1|99735_100578_+	hypothetical protein	NA	J9Q7Z4	Salmonella_phage	97.1	2.3e-125
WP_000801005.1|100740_101112_+	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	98.4	3.0e-69
WP_000737807.1|101095_101506_+	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.1	1.4e-75
WP_000699340.1|101574_101850_+	hypothetical protein	NA	J9Q738	Salmonella_phage	96.7	5.9e-46
WP_000859650.1|101889_102195_+	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	90.8	4.9e-33
WP_011011087.1|102194_102398_+	hypothetical protein	NA	J9Q7S8	Salmonella_phage	94.3	4.0e-31
WP_154080930.1|102580_102721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001293470.1|102926_103982_-	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.0	1.5e-185
WP_000364575.1|104726_105371_+	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	2.4e-122
WP_001288958.1|105446_105941_+	GNAT family N-acetyltransferase	NA	J9Q6J3	Salmonella_phage	97.6	2.3e-88
WP_000832167.1|105972_106476_-	hypothetical protein	NA	J9Q7Z6	Salmonella_phage	98.2	5.5e-90
