The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	74	61838	4732489	tail,protease,transposase,tRNA	Salmonella_phage(58.33%)	42	NA	NA
WP_000905046.1|74_641_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|783_1956_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1965_2481_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|2535_2838_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|2852_2972_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|2964_6042_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|6038_6524_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|6520_7621_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|7711_7930_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|9511_9970_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|10077_10416_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|10522_11371_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000201804.1|17350_18202_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000591414.1|18146_19991_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000186987.1|20364_21465_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000813838.1|21511_21871_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000971958.1|21886_22522_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_001120789.1|22720_24121_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_001025919.1|24103_25021_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_094516705.1|25304_26672_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001575262.1|26797_27574_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000935332.1|27581_28586_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_000800208.1|28674_29826_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_001192092.1|33046_34780_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_000424865.1|36030_36693_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000374033.1|36704_37808_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_000108110.1|37914_40095_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_000007507.1|40259_41150_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_001090459.1|41428_42910_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000976816.1|42854_43961_-	alanine racemase	NA	NA	NA	NA	NA
WP_000609328.1|43957_45196_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	5.9e-101
WP_000865256.1|45459_47016_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001134817.1|47151_48276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110811.1|49002_51435_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_000197208.1|51437_52598_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000852811.1|52862_53180_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000792797.1|55624_56287_+	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000715284.1|56332_56545_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000109394.1|56748_58947_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_000841337.1|59101_60127_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000068796.1|60220_61216_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000208240.1|61307_61838_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 2
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	851210	942598	4732489	terminase,capsid,tail,head,lysis,transposase,portal,plate,integrase	Salmonella_phage(78.0%)	98	854359:854418	942611:943926
WP_000089603.1|851210_852362_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
WP_000455463.1|852458_852926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|853137_854013_+	hypothetical protein	NA	NA	NA	NA	NA
854359:854418	attL	GAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATCCAGCATCAAAT	NA	NA	NA	NA
WP_000343717.1|854430_855639_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
WP_000214158.1|855842_856757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|856775_857516_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|857494_858181_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|858216_858717_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|858726_859296_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|859315_861406_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|861402_862161_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|862397_862652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|862651_862891_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|862920_863283_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|863292_863667_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|863663_864317_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|864316_865216_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|865205_866684_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|866670_867120_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|870110_870497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|870651_871044_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|871040_872009_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|872023_873454_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|873786_875292_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000993574.1|875327_875717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|875940_876183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|876587_877835_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_000502502.1|877819_878461_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|878671_879214_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|880479_881400_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_000343717.1|881600_882809_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
WP_001222413.1|882928_883198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|883329_884604_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|884823_885201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|885287_885506_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|885573_886674_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|886670_887156_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|887155_889702_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|889928_890048_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|890062_890365_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|890419_890935_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|890944_892117_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|892219_892438_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|892651_893374_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|893571_893979_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|893985_895605_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|895601_896207_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|896199_897108_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|897094_897454_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|897450_898029_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|898097_898544_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039961.1|898536_898968_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_024131238.1|899063_899492_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001097942.1|899870_900380_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|900360_900576_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|900579_900783_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|900782_901247_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|901340_901991_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_057484674.1|901994_903059_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	4.3e-193
WP_000216272.1|903075_903909_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_057484673.1|904051_905818_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.3	0.0e+00
WP_001681813.1|905817_906861_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|906909_907605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|907624_908689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|908685_909750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|909759_909978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|910073_910307_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|910318_910507_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|910674_913083_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|913073_913934_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|913930_914515_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|914511_914739_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|914738_914972_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|915039_915381_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|915344_915545_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|915552_916062_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|916094_916337_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|916453_917086_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|917089_918115_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|919221_919479_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|919489_920380_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|920379_921126_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|921427_923398_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|923417_924722_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|924744_925440_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|925465_926260_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|926269_927337_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_057484672.1|927381_929118_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|929117_931613_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|931636_932683_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|932685_933963_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|934207_934747_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|935600_937112_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|937095_938685_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|938848_939862_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_001143724.1|940288_940582_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000622308.1|940578_941067_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000343717.1|941389_942598_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
942611:943926	attR	ATTTGATGCTGGATTGAACATATCAAAATCAGGCAATTACACAAATCTATGTACAGGCTCTTTTTAAAACTGGCTTAATTGCTTTTCTATATTTTTCAACTAATCCCAGATCATATAGCCTGGCTTTCCTGGAGTCTCCTATTAAGTTACTATCAATATCCTTTGCTATGTCTTCTTCTATTTTATGAAACGCTCTTTTTTCTGTCATGTCCTGTTTGGAATTAAATATAAATATGCAGAATAACAAGATTGCCGCGATAACTTGAATTAGTGGTATATTTACGCTCCAACATCCAAGAGTTGAAATAAATAACCAAATCCCTTGTGAGTTTGCCTGAGATCTAAATTCATCAATATGTTTACTATAATTCTTGATATGTTCTAATATAGCGTCATTTTTACATTGTTCCATACAATTATTTCCATTGTAGACATTTAAAATCATCAGAAGAAAAGCAGCTACATGTAGCTGCCTATAGATATAAAGACGCTGTCATTTCCGCCCTTTATTGGCTTGGGAAAGAACTGAAGCAGCAAGCGTCTTTGTTTGGTCATTATATTTAGGGCTATTTAAAACTTTTGAGGCTGTAGTCTCCATTTCCCCACCCGTTTGGTTTGAAGTCCCAGATTGGGATAAAGCAGATCCGGCTAAACTTTTCTGAATAGCTGAAGCATTAGGATCTTTCAGCACTTGAGCTGCTTGTGATGCAATCGTTGAGGAGGTTTTCTTAGTATTATTTGGCATATGTATTAGCACCTATGTAGAGTTACAGTTTTGAGCATGTAGTATCATTTTTTAATAAAACATGCCATATGTTGTATATACTGTATTCATATACAGTTATGAGATCAAGCCAAATAATTTGATATATATCAAATCATGGTTATATTATGTTTAAAACATAAGAGCTACAAAGCAAACAAAATAAAGGAATCCAGTTTTCCAGATGGCCAATGGTATTCACTTGGTGGCATGGTAATACTTACGGTGTTTTGTTGGCTCTCGCTAATTAACCCGATCTCTGGTTAATTAGCGAGAGCTATATTGCTAACGTTGGTGGCCACCGTTCCGTGAAACATCTAAAACGAAAACATCAATTAAATCACGGAGATCAGCCGGTAGTACTGCTTCAATACTAATTTTTAGCTCCTGAGCGGTTTTAATTCCGTGGGTTTTGCGGCCAGCAACGGTTTCGCTTTCTCCAAACCATATGACAAGAAAGATACCTTGCTGTTCGGCATCAGGGTGAATGGAATAACGGTCATAGAGTTGGGCTGAAGCAGCAGAATATAACTCTCTGTGCCACTGGCCTTTG	NA	NA	NA	NA
>prophage 3
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	1092445	1105106	4732489	integrase	Enterobacteria_phage(55.56%)	13	1082980:1082993	1096111:1096124
1082980:1082993	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|1092445_1093936_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|1094406_1095672_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|1095734_1096811_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
1096111:1096124	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_000700163.1|1096807_1097866_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000493739.1|1097855_1099019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|1099294_1099861_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|1099876_1100116_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_001779443.1|1100119_1100863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000556588.1|1101402_1101669_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	5.8e-30
WP_015701354.1|1101665_1102217_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_001216603.1|1102213_1102441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000795388.1|1102437_1102758_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783716.1|1102772_1105106_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	86.5	0.0e+00
>prophage 4
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	1461073	1526002	4732489	protease,transposase,tRNA,plate	uncultured_Mediterranean_phage(11.11%)	52	NA	NA
WP_000753959.1|1461073_1462501_+|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.8	2.1e-25
WP_000929456.1|1462653_1463811_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA	NA
WP_000272193.1|1463899_1464286_-	DUF3461 family protein	NA	NA	NA	NA	NA
WP_001186669.1|1465871_1466696_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_001094518.1|1466725_1469398_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA	NA
WP_001018214.1|1469510_1470305_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_000246886.1|1470754_1471480_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_000808106.1|1471737_1472589_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_000224567.1|1472733_1473459_+	UMP kinase	NA	NA	NA	NA	NA
WP_000622423.1|1473605_1474163_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_000811892.1|1474304_1475501_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_000947409.1|1475813_1476572_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.2	2.5e-25
WP_000922422.1|1476584_1477442_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000949016.1|1477453_1478806_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
WP_001240921.1|1478837_1481249_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_000758966.1|1481371_1481857_+	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_001139265.1|1481860_1482886_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_000210741.1|1482991_1483447_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_000566033.1|1483450_1484239_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000741216.1|1484238_1485387_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_000569412.1|1485383_1485980_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.3	1.5e-25
WP_001294828.1|1486003_1489486_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	4.8e-209
WP_000055753.1|1489498_1490458_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_000502118.1|1490649_1491108_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_001021059.1|1493186_1495328_+	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
WP_000901086.1|1495383_1495773_+	VOC family protein	NA	NA	NA	NA	NA
WP_000210062.1|1495835_1497128_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_000062330.1|1497211_1497472_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_001518678.1|1497458_1497659_-	YaeP family protein	NA	NA	NA	NA	NA
WP_001185319.1|1497856_1498402_+	YaeQ family protein	NA	NA	NA	NA	NA
WP_000560526.1|1498398_1498821_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000252574.1|1498852_1499554_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_000502118.1|1499661_1500120_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_001260683.1|1500338_1502057_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000093978.1|1502167_1502875_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_001202315.1|1502871_1503276_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
WP_000874217.1|1503394_1504210_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA	NA
WP_001287483.1|1504248_1504902_-	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_000594016.1|1504894_1505926_-	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	1.2e-35
WP_001140158.1|1506115_1506682_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_000154870.1|1512467_1513271_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_000648539.1|1513291_1514206_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001127546.1|1514310_1515486_+	MFS transporter	NA	NA	NA	NA	NA
WP_001230964.1|1515617_1516418_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_000207227.1|1516495_1517266_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000644706.1|1517321_1518689_-	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_001052766.1|1518760_1519516_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000801233.1|1519550_1520273_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000917872.1|1520269_1520737_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_001670675.1|1520800_1521532_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000145233.1|1523126_1524122_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000371495.1|1524118_1526002_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 5
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	2151174	2158486	4732489	protease,integrase	Dickeya_phage(16.67%)	7	2152425:2152439	2163791:2163805
WP_001201759.1|2151174_2152293_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|2152289_2154236_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2152425:2152439	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|2154365_2154587_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|2154910_2155231_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|2155261_2157538_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|2157749_2157947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|2158108_2158486_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
2163791:2163805	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 6
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	2229798	2310093	4732489	terminase,tail,protease,head,transposase,plate,holin	Salmonella_phage(68.85%)	93	NA	NA
WP_001262313.1|2229798_2231091_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|2231135_2231384_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|2231424_2231664_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|2231669_2232551_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|2232547_2233612_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|2233689_2234370_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|2234366_2235152_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|2235157_2235454_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|2235544_2235745_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|2236033_2236438_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|2236567_2236804_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|2236769_2237144_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|2237228_2238212_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|2238214_2238964_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|2238974_2239322_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|2239318_2239843_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|2239842_2240316_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|2240319_2240892_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|2241737_2241917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|2241927_2242425_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|2242609_2242849_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|2243183_2243786_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|2243994_2244606_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|2244602_2244749_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|2244738_2245536_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_000343717.1|2245847_2247056_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
WP_001534733.1|2247257_2247383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|2247518_2247968_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|2248184_2248574_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|2248560_2248842_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|2248841_2249456_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_001050879.1|2249452_2249992_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_000495544.1|2250034_2250412_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|2250508_2250736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|2250825_2251578_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|2251543_2252947_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|2252946_2254416_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|2254300_2255038_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_057484671.1|2255052_2256285_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	98.8	5.3e-227
WP_000128060.1|2256289_2256787_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|2256798_2257740_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|2257781_2258150_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|2258115_2258523_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|2258519_2259074_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|2259060_2259450_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|2259424_2259988_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|2259991_2261137_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|2261148_2261589_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|2261592_2262045_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|2262222_2264175_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|2264174_2264825_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|2264828_2265131_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|2265133_2266165_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|2266161_2266497_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|2266691_2267423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|2267422_2267851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|2267909_2268665_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|2268905_2269259_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|2269259_2270459_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|2270455_2271136_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|2271135_2272647_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|2272661_2273180_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_000480169.1|2274101_2274803_-	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000193884.1|2275819_2278432_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000291724.1|2278639_2279650_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|2279815_2280358_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224084.1|2280354_2281464_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086472.1|2281562_2283671_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000053045.1|2283683_2285591_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|2285605_2286859_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433416.1|2286863_2288504_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|2288500_2289064_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001764860.1|2289317_2289485_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|2289584_2290103_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156455.1|2290171_2291932_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877174.1|2292117_2292570_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_010989142.1|2292641_2293694_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|2294048_2294558_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202371.1|2294774_2295380_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950867.1|2295366_2297520_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|2297538_2297985_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420526.1|2298108_2300163_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_000424187.1|2300198_2300657_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|2300751_2301414_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|2301587_2302001_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|2302045_2302363_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140485.1|2302420_2303632_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000502118.1|2304763_2305222_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000072884.1|2305958_2306240_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|2306236_2306566_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374046.1|2306652_2307312_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000502118.1|2307975_2308434_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000343717.1|2308884_2310093_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
>prophage 7
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	2977650	2982062	4732489		Escherichia_phage(50.0%)	6	NA	NA
WP_000497451.1|2977650_2977890_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|2978762_2979572_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2979644_2980022_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2980169_2980712_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2980903_2981632_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2981648_2982062_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 8
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	3185964	3193198	4732489		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|3185964_3187395_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|3187468_3188164_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|3188243_3188555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|3189205_3190390_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|3190650_3190839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|3190849_3191062_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|3191507_3192776_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|3192778_3193198_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 9
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	3276940	3287447	4732489		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|3276940_3278254_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|3278280_3279360_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|3279364_3280138_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|3280153_3281128_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|3281133_3281685_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|3281685_3282564_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|3282611_3283511_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|3283510_3284596_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|3284972_3285866_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|3286043_3287447_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 10
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	3363339	3372510	4732489	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3363339_3365373_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3365613_3366072_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3366243_3366774_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3366830_3367298_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|3367344_3368064_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_057484634.1|3368060_3369746_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.9	5.3e-278
WP_001240415.1|3369968_3370700_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3370759_3370867_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3370847_3371579_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3371562_3372510_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 11
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	3606968	3612999	4732489		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3606968_3607910_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3609152_3609542_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3609510_3609765_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3609781_3611704_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3612693_3612837_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3612852_3612999_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 12
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	3845976	3922641	4732489	tail,tRNA	Salmonella_phage(33.33%)	57	NA	NA
WP_000083348.1|3845976_3846714_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219176.1|3846843_3848178_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000188410.1|3849195_3849783_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|3849844_3850228_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|3850546_3851236_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|3851351_3852389_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098738.1|3852592_3853012_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	2.6e-16
WP_050153409.1|3853084_3853765_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082656.1|3853818_3856479_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949286.1|3856593_3857949_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001264473.1|3857993_3858317_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000807800.1|3858313_3859615_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	29.9	2.2e-42
WP_000985648.1|3859718_3860174_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	1.9e-33
WP_001235094.1|3866334_3868908_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3869037_3869769_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3869765_3870746_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3870877_3871615_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3871886_3872225_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3872328_3872376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3872475_3873636_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3873596_3874505_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3874562_3875684_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3875693_3876764_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3877203_3877722_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3877714_3878935_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3879091_3879439_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3879479_3880247_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3880291_3880840_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3880858_3881107_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3881450_3882812_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3882977_3883769_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3883788_3885075_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3885195_3885753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3885834_3886425_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3886548_3887427_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3887512_3889174_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3889322_3889661_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3889826_3890117_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3890106_3890583_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3890732_3891215_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237656.1|3891834_3902709_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|3902772_3904182_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|3904178_3906359_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3906366_3907530_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3908072_3908846_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|3908814_3908988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|3909249_3909468_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3909558_3910659_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3910655_3911141_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3911137_3914215_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3914207_3914327_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3914341_3914644_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3914698_3915214_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3915223_3916396_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3916538_3917105_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3917788_3918904_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|3918984_3922641_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 13
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	4242587	4285391	4732489	protease,transposase,tRNA,integrase	Bacillus_virus(20.0%)	46	4232703:4232716	4293023:4293036
4232703:4232716	attL	TTCACAACGCCAGC	NA	NA	NA	NA
WP_001204111.1|4242587_4243046_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|4243235_4244315_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|4244416_4245580_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|4245601_4246648_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|4247021_4247447_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|4247472_4248051_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|4248051_4248759_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|4248746_4249424_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|4249417_4250074_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|4250178_4250637_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|4250825_4252817_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|4253092_4253851_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|4253951_4254872_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|4255099_4257076_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|4257084_4257216_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|4257349_4257514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|4257510_4257810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|4257865_4259020_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|4259512_4260907_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|4260985_4261483_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|4261578_4262286_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|4262362_4263094_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|4263113_4264061_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|4264276_4264840_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|4264839_4265256_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|4265302_4265989_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|4266118_4267099_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|4267116_4267821_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|4267839_4268406_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|4268402_4268693_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|4268700_4269294_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|4269286_4270423_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|4270513_4271521_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|4271653_4272700_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|4273018_4273477_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000343717.1|4273536_4274745_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
WP_000984827.1|4274922_4275642_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|4275691_4276018_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|4276017_4276737_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|4276891_4277944_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|4277971_4278247_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|4278359_4279445_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|4279661_4280918_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|4283528_4284236_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|4284577_4284862_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_014341481.1|4285046_4285391_+|integrase	integrase	integrase	NA	NA	NA	NA
4293023:4293036	attR	TTCACAACGCCAGC	NA	NA	NA	NA
>prophage 14
NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	4732489	4706987	4732489	4732489	terminase,capsid,tail,head,lysis,transposase,portal,plate,integrase	Salmonella_phage(83.33%)	35	4701951:4701965	4714117:4714131
4701951:4701965	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4706987_4708634_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4708773_4708872_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4709497_4710550_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4710738_4710930_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4710945_4711515_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4711640_4711862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4711894_4712404_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4712411_4712708_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4712825_4713167_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4713234_4713468_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4713467_4713695_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4713691_4714549_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4714117:4714131	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4714545_4716960_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4717113_4717302_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000343717.1|4717437_4718646_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	3.7e-47
WP_000822803.1|4718692_4718992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4719100_4719979_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4720592_4721507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4721503_4722244_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4722278_4723316_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4723315_4725082_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4725224_4726058_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4726074_4727133_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4727136_4727787_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4727882_4728347_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4728346_4728550_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4728553_4728769_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4728749_4729262_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4729263_4729641_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4729637_4730066_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4730161_4730593_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4730585_4731032_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4731100_4731679_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4731675_4732035_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_001784853.1|4732021_4732489_+|plate	baseplate J/gp47 family protein	plate	A0A1S6KZY6	Salmonella_phage	86.5	1.8e-66
