assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001362135.2_11909_3	NZ_LT904872	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 chromosome 1	1	4075845-4076143	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	cas3,DEDDh,c2c9_V-U4,WYL,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,GTTTATCCCCGCTGGCGCGGGGAACAC,GTTTATCCCCGCTGGCGCGGGGAACAC	29,27,27	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	cas3,DEDDh,c2c9_V-U4,WYL,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_LT904872.1_4067711_4068473_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LT904872.1_4068453_4069503_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LT904872.1_4069499_4069979_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LT904872.1_4069978_4070689_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LT904872.1_4070707_4071019_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LT904872.1_4071209_4071533_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LT904872.1_4071583_4072189_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LT904872.1_4072175_4073615_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LT904872.1_4073624_4074533_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LT904872.1_4074783_4075830_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LT904872.1_4076227_4076521_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_LT904872.1_4076523_4077441_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_LT904872.1_4077440_4078145_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_LT904872.1_4078144_4078870_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LT904872.1_4078879_4079938_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_LT904872.1_4079960_4080563_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_LT904872.1_4080579_4082115_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NZ_LT904872.1_4085553_4086507_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_LT904872.1_4086594_4087329_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_LT904872.1_4087404_4089117_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001362135.2_11909_3	NZ_LT904873	Salmonella enterica subsp. enterica serovar Typhi strain ERL11909 plasmid 2	1	5653-5772	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,WYL,DinG,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|104aa|up_5|NZ_LT904873.1_1927_2239_+,NA|207aa|up_4|NZ_LT904873.1_2276_2897_+,NA|163aa|up_3|NZ_LT904873.1_3068_3557_+,NA|118aa|up_2|NZ_LT904873.1_3587_3941_-,NA|149aa|up_1|NZ_LT904873.1_4077_4524_-,NA|183aa|down_3|NZ_LT904873.1_8094_8643_+,NA|71aa|down_4|NZ_LT904873.1_8708_8921_+,NA|110aa|down_6|NZ_LT904873.1_9246_9576_+,NA|91aa|down_7|NZ_LT904873.1_10030_10303_+,NA|182aa|down_8|NZ_LT904873.1_10628_11174_+	NA|NA	NA	NA|210aa|up_8|NZ_LT904873.1_94_724_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|207aa|up_7|NZ_LT904873.1_1009_1630_+	cd02042, ParAB_family, partition proteins ParAB family	NA|77aa|up_6|NZ_LT904873.1_1681_1912_+	pfam09274, ParG, ParG	NA|104aa|up_5|NZ_LT904873.1_1927_2239_+	NA	NA|207aa|up_4|NZ_LT904873.1_2276_2897_+	NA	NA|163aa|up_3|NZ_LT904873.1_3068_3557_+	NA	NA|118aa|up_2|NZ_LT904873.1_3587_3941_-	NA	NA|149aa|up_1|NZ_LT904873.1_4077_4524_-	NA	NA|279aa|up_0|NZ_LT904873.1_4563_5400_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_LT904873.1_6634_6886_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_LT904873.1_6875_7157_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|172aa|down_2|NZ_LT904873.1_7505_8021_+	cd06257, DnaJ, DnaJ domain or J-domain	NA|183aa|down_3|NZ_LT904873.1_8094_8643_+	NA	NA|71aa|down_4|NZ_LT904873.1_8708_8921_+	NA	NA|81aa|down_5|NZ_LT904873.1_8910_9153_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|110aa|down_6|NZ_LT904873.1_9246_9576_+	NA	NA|91aa|down_7|NZ_LT904873.1_10030_10303_+	NA	NA|182aa|down_8|NZ_LT904873.1_10628_11174_+	NA	NA|403aa|down_9|NZ_LT904873.1_12967_14176_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
