The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	628365	722011	4835677	capsid,portal,plate,head,integrase,tail,terminase,lysis	Salmonella_phage(81.63%)	105	629511:629527	727241:727257
WP_050187030.1|628365_629490_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	45.1	6.2e-49
629511:629527	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|629586_630054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|630265_631141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|631328_631691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|631647_632562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|632580_633321_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|633299_633986_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|634021_634522_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|634531_635101_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|635120_637211_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|637207_637966_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|638202_638457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|638456_638696_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|638725_639088_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|639097_639472_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|639468_640122_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|640121_641021_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|641010_642489_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|642475_642925_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|645915_646302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|646456_646849_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|646845_647814_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|647828_649259_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|649591_651097_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000993574.1|651132_651522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|651745_651988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050187167.1|652392_653640_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	32.9	7.8e-61
WP_000502502.1|653624_654266_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|654476_655019_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|656284_657205_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|657928_658231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|658326_658707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|659077_659287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|659304_659757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|659753_660050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|660127_660586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|660674_662624_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|662695_663604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|663677_664577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|664651_664978_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|665077_665347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|665478_666753_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|666972_667350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|667436_667655_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|667722_668823_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|668819_669305_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_161976233.1|669304_671851_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000763315.1|672077_672197_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|672211_672514_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|672568_673084_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|673093_674266_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|674368_674587_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|674800_675523_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|675720_676128_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|676134_677754_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|677750_678356_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|678348_679257_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|679243_679603_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|679599_680178_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|680246_680693_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039961.1|680685_681117_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_024131238.1|681212_681641_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|681637_682015_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|682019_682529_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|682509_682725_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|682728_682932_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|682931_683396_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|683489_684140_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|684143_685208_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|685224_686058_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|686200_687967_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|687966_689010_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|689058_689754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|689773_690838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|690834_691899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|691908_692127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|692222_692456_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|692467_692656_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|692823_695232_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|695222_696083_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|696079_696664_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|696660_696888_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|696887_697121_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|697188_697530_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|697493_697694_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|697701_698211_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|698243_698486_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|698602_699235_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|699238_700264_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|701370_701628_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|701638_702529_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|702528_703275_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|703576_705547_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|705566_706871_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|706893_707589_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|707614_708409_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|708418_709486_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|709530_711267_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|711266_713762_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|713785_714832_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|714834_716112_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|716356_716896_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|717749_719261_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|719244_720834_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|720997_722011_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
727241:727257	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 2
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	874187	886848	4835677	integrase	Enterobacteria_phage(55.56%)	13	864722:864735	877853:877866
864722:864735	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|874187_875678_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|876148_877414_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|877476_878553_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
877853:877866	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_000700163.1|878549_879608_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000493739.1|879597_880761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|881036_881603_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|881618_881858_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_001779443.1|881861_882605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000556588.1|883144_883411_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	5.8e-30
WP_015701354.1|883407_883959_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_001216603.1|883955_884183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000795388.1|884179_884500_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783716.1|884514_886848_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	86.5	0.0e+00
>prophage 3
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	1539817	1545848	4835677		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|1539817_1539964_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|1539979_1540123_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|1541112_1543035_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|1543051_1543306_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|1543274_1543664_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|1544906_1545848_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 4
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	1866863	1877370	4835677		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|1866863_1868267_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|1868444_1869338_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1869714_1870800_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|1870799_1871699_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|1871746_1872625_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|1872625_1873177_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|1873182_1874157_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1874172_1874946_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|1874950_1876030_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|1876056_1877370_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 5
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	1962556	1969790	4835677		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1962556_1962976_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|1962978_1964247_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|1964692_1964905_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|1964915_1965104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|1965364_1966549_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|1967199_1967511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|1967590_1968286_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|1968359_1969790_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	2173691	2178103	4835677		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|2173691_2174105_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|2174121_2174850_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|2175041_2175584_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|2175731_2176109_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|2176181_2176991_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|2177487_2177652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|2177863_2178103_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 7
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	2359139	2430742	4835677	capsid,plate,transposase,tRNA,integrase,tail,protease	Burkholderia_virus(39.02%)	84	2398147:2398163	2431161:2431177
WP_000168626.1|2359139_2360414_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|2361162_2361768_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|2361872_2363378_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|2363978_2364614_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|2364613_2365306_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|2365308_2365929_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|2365932_2366991_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|2366991_2369013_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|2369005_2369584_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|2369583_2370165_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|2370241_2370682_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|2370770_2370986_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|2371284_2371410_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|2371617_2372658_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|2372731_2373733_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|2374438_2375947_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|2376049_2377225_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|2377424_2379071_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|2379238_2380642_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|2380638_2381568_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|2381643_2382945_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|2383055_2384762_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|2384914_2386066_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|2386546_2387278_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|2387404_2387740_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|2387801_2389184_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|2389464_2390037_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_001802272.1|2390108_2390612_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|2390611_2391229_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_048661831.1|2391235_2391712_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	57.0	3.0e-45
WP_024134057.1|2391722_2392184_-|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_000002046.1|2392194_2393220_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
WP_000852584.1|2393222_2393801_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2393793_2394897_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2394887_2395235_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2395291_2395819_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|2395815_2396970_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|2396957_2397170_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_057484949.1|2397169_2398054_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	5.8e-50
WP_000135574.1|2398053_2400519_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
2398147:2398163	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|2400612_2400750_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|2400694_2401030_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|2401127_2401409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|2401411_2401936_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|2401932_2403360_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|2403349_2403601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|2403600_2404065_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|2404064_2404511_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|2404512_2404851_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|2404860_2405814_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|2405828_2406944_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|2407158_2407617_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|2407619_2408441_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|2408421_2409918_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|2409917_2411459_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|2411509_2412055_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_050187170.1|2412054_2412366_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|2412365_2412692_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|2412688_2413339_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|2413322_2414051_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|2414053_2414404_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|2414647_2415244_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_124682070.1|2415332_2415671_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.1	1.9e-22
WP_000567456.1|2415680_2415845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|2415848_2417618_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|2417628_2418795_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|2418797_2419067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2419094_2419625_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|2419913_2420186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|2420195_2420498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2420494_2420878_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|2420885_2421086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2421082_2421766_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|2421762_2421993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|2421982_2422198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|2422190_2422640_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|2422611_2423001_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|2423182_2424127_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|2424653_2426183_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|2426193_2427582_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|2427756_2428791_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|2429207_2429570_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|2429556_2429886_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|2429920_2430742_-|protease	serine protease	protease	NA	NA	NA	NA
2431161:2431177	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
>prophage 8
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	2876842	2955043	4835677	transposase,plate,holin,head,terminase,tail,protease	Salmonella_phage(70.49%)	94	NA	NA
WP_000938184.1|2876842_2877523_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|2877730_2878189_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2878145_2878328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000374046.1|2878852_2879512_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2879598_2879928_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2879924_2880206_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|2880942_2881401_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|2882532_2883744_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2883801_2884119_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|2884163_2884577_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2884750_2885413_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2885507_2885966_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|2886001_2888056_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|2888179_2888626_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|2888644_2890798_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|2890784_2891390_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2891606_2892116_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|2892470_2893523_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|2893594_2894047_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|2894232_2895993_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2896061_2896580_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|2896679_2896847_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2897100_2897664_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2897660_2899301_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|2899305_2900559_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|2900573_2902481_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|2902493_2904602_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|2904700_2905810_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2905806_2906349_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|2906514_2907525_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|2907732_2910345_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|2911361_2912063_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|2912984_2913503_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|2913517_2915029_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|2915028_2915709_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|2915705_2916905_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|2916905_2917259_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|2917499_2918255_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|2918313_2918742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|2918741_2919473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|2919667_2920003_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|2919999_2921031_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|2921033_2921336_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|2921339_2921990_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|2921989_2923942_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|2924119_2924572_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|2924575_2925016_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|2925027_2926173_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|2926176_2926740_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|2926714_2927104_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_050187141.1|2927090_2927645_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.1e-94
WP_001125675.1|2927641_2928049_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|2928014_2928383_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_050187140.1|2928424_2929366_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	1.2e-178
WP_000128060.1|2929377_2929875_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|2929879_2931112_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|2931126_2931864_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|2931748_2933218_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|2933217_2934621_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|2934586_2935339_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|2935428_2935656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|2935752_2936130_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|2936172_2936712_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|2936708_2937323_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|2937322_2937604_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|2937590_2937980_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|2938196_2938646_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2938781_2938907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|2939305_2940103_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2940092_2940239_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|2940235_2940847_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|2941055_2941658_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001804676.1|2941697_2941937_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	5.9e-42
WP_001217670.1|2941992_2942232_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|2942416_2942914_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|2942924_2943104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208074.1|2943949_2944522_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|2944525_2944999_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|2944998_2945523_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|2945519_2945867_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|2945877_2946627_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|2946629_2947613_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|2947697_2948072_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|2948037_2948274_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|2948403_2948808_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|2949096_2949297_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|2949387_2949684_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|2949689_2950475_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|2950471_2951152_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|2951229_2952294_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|2952290_2953172_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|2953177_2953417_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|2953457_2953706_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_050187139.1|2953750_2955043_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.5	1.4e-251
>prophage 9
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	3025981	3033293	4835677	integrase,protease	Ralstonia_phage(16.67%)	7	3021037:3021051	3032029:3032043
3021037:3021051	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|3025981_3026359_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|3026520_3026718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|3026929_3029206_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|3029236_3029557_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3029880_3030102_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|3030231_3032178_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
3032029:3032043	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|3032174_3033293_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 10
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	3647556	3734717	4835677	plate,tail,tRNA	Salmonella_phage(40.0%)	66	NA	NA
WP_000118732.1|3647556_3648900_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|3648903_3649440_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|3649506_3649992_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|3650228_3650654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|3650625_3651027_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|3652611_3653154_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|3653217_3653508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|3653593_3656257_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|3656624_3657527_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|3657513_3658338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|3658334_3658829_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|3658844_3660728_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|3660724_3661720_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|3663314_3664046_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|3664109_3664577_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|3664573_3665296_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|3665330_3666086_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3666157_3667525_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|3667580_3668351_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|3668428_3669229_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|3669360_3670536_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|3670640_3671555_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|3671575_3672379_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_057484951.1|3678411_3680985_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3681114_3681846_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3681842_3682823_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3682954_3683692_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3683963_3684302_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3684405_3684453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3684552_3685713_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3685673_3686582_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3686639_3687761_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3687770_3688841_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3689280_3689799_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3689791_3691012_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3691168_3691516_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3691556_3692324_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3692368_3692917_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3692935_3693184_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3693527_3694889_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3695054_3695846_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3695865_3697152_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001518875.1|3697910_3698501_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3698624_3699503_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3699588_3701250_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3701398_3701737_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3701902_3702193_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3702182_3702659_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3702808_3703291_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_048661924.1|3703910_3714785_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_000533850.1|3714848_3716258_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196138.1|3716254_3718435_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3718442_3719606_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3720148_3720922_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|3720890_3721064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|3721325_3721544_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3721634_3722735_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3722731_3723217_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|3723213_3726291_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|3726283_3726403_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3726417_3726720_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3726774_3727290_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3727299_3728472_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3728614_3729181_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3729864_3730980_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_001111827.1|3731060_3734717_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 11
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	4052144	4099291	4835677	transposase,integrase,tRNA,protease	Bacillus_virus(20.0%)	50	4080140:4080154	4108021:4108035
WP_000502119.1|4052144_4052603_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|4052559_4052742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034386.1|4052792_4053872_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|4053973_4055137_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|4055158_4056205_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|4056578_4057004_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|4057029_4057608_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|4057608_4058316_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|4058303_4058981_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|4058974_4059631_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|4059735_4060194_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|4060150_4060333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000098658.1|4060382_4062374_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|4062649_4063408_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|4063508_4064429_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|4064656_4066633_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|4066641_4066773_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_158645433.1|4066927_4067071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|4067067_4067367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|4067422_4068577_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|4069069_4070464_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|4070542_4071040_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|4071135_4071843_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|4071919_4072651_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|4072670_4073618_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|4073833_4074397_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|4074396_4074813_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|4074859_4075546_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|4075675_4076656_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|4076673_4077378_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|4077396_4077963_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|4077959_4078250_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|4078257_4078851_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|4078843_4079980_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|4080070_4081078_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
4080140:4080154	attL	ATCCATGATTTTCAT	NA	NA	NA	NA
WP_000394189.1|4081210_4082257_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_023227599.1|4082436_4082619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|4082575_4083034_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|4083156_4083876_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|4083925_4084252_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|4084251_4084971_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|4085125_4086178_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|4086205_4086481_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|4086593_4087679_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|4087895_4089152_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|4091762_4092470_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_050187157.1|4092827_4094012_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	52.6	4.1e-120
WP_000999840.1|4094424_4095468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050187158.1|4095827_4097330_-	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_077942061.1|4098322_4099291_-|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	95.3	1.8e-177
4108021:4108035	attR	ATCCATGATTTTCAT	NA	NA	NA	NA
>prophage 12
NZ_LT904867	Salmonella enterica subsp. enterica serovar Typhi strain ERL034151 chromosome 1	4835677	4540798	4580296	4835677	capsid,transposase,plate,head,terminase,integrase,tail,lysis	Salmonella_phage(78.05%)	48	4535762:4535776	4547928:4547942
4535762:4535776	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4540798_4542445_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4542584_4542683_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_057484962.1|4543308_4544361_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	2.7e-107
WP_000900883.1|4544549_4544741_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4544756_4545326_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4545451_4545673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4545705_4546215_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4546222_4546519_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4546636_4546978_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4547045_4547279_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4547278_4547506_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4547502_4548360_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4547928:4547942	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4548356_4550771_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4550924_4551113_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4551180_4551480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4551588_4552467_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4553080_4553995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4553991_4554732_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_001098422.1|4555802_4557569_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4557711_4558545_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4558561_4559620_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4559623_4560274_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_044316770.1|4560510_4561530_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000673504.1|4561811_4562276_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4562275_4562479_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4562482_4562698_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4562678_4563191_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4563192_4563570_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4563566_4563995_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4564090_4564522_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4564514_4564961_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4565029_4565608_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4565604_4565964_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4565950_4566859_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4566851_4567457_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104804.1|4567453_4568968_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_000805568.1|4568967_4569561_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|4569532_4569973_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_000905046.1|4570401_4570968_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|4571110_4572283_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|4572292_4572808_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|4572862_4573165_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4573179_4573299_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|4573291_4576369_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|4576365_4576851_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4576847_4577948_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4578038_4578257_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4579837_4580296_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
