The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	0	26262	4795849	tail,integrase,plate,capsid,head,terminase,lysis,portal	Salmonella_phage(83.87%)	36	4158:4172	30987:31001
WP_000104802.1|0_1048_-	hypothetical protein	NA	M1TAS6	Escherichia_phage	79.4	1.2e-150
WP_001086816.1|1044_1650_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268271.1|1642_2551_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_000177595.1|2537_2897_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000993754.1|2893_3472_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000829146.1|3540_3987_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_001039939.1|3979_4411_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
4158:4172	attL	AACGCCGGGTTATTG	NA	NA	NA	NA
WP_001080928.1|4506_4935_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_000727853.1|4931_5309_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001341072.1|5310_5784_-	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
WP_000171568.1|5803_6019_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_000868175.1|6022_6226_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000673504.1|6225_6690_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000059191.1|6785_7436_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000742518.1|7439_8498_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000216244.1|8514_9348_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_001098422.1|9490_11257_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000518064.1|11256_12294_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_000185757.1|12328_13069_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001146827.1|13065_13980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|14593_15472_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_000822803.1|15580_15880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001580533.1|15947_16136_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000017503.1|16289_18704_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_000104152.1|18700_19558_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
WP_000752613.1|19554_19782_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244218.1|19781_20015_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000996717.1|20082_20424_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_000956176.1|20541_20838_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000460893.1|20845_21355_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_001247706.1|21387_21609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047327.1|21734_22304_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_000900883.1|22319_22511_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_000290950.1|22699_23752_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001311244.1|24377_24476_+	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_001012560.1|24615_26262_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
30987:31001	attR	CAATAACCCGGCGTT	NA	NA	NA	NA
>prophage 2
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	443558	537217	4795849	tail,integrase,plate,capsid,head,terminase,lysis,portal	Salmonella_phage(81.63%)	106	444731:444747	542447:542463
WP_000089603.1|443558_444710_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
444731:444747	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|444806_445274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|445485_446361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|446548_446911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|446867_447782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|447800_448541_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|448519_449206_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|449241_449742_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|449751_450321_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000071290.1|450340_452431_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|452427_453186_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_001686573.1|453404_453677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|453676_453916_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|453945_454308_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|454317_454692_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|454688_455342_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001240640.1|455341_456241_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001165842.1|456230_457709_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989290.1|457701_458145_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|461134_461521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|461675_462068_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|462064_463033_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_010989292.1|463047_464478_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000175255.1|464474_464807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000213770.1|464810_466316_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000993574.1|466351_466741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000623988.1|466964_467207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283066.1|467611_468859_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.1	6.0e-61
WP_010989294.1|468870_469485_+	ParB-like nuclease domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	8.3e-56
WP_010989295.1|469695_470238_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|471503_472424_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_001020123.1|473147_473450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|473545_473926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|474296_474506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|474523_474976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|474972_475269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|475346_475805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|475893_477843_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|477914_478823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022216.1|478896_479796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989298.1|479837_480197_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|480296_480566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|480697_481972_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001039750.1|482191_482569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|482655_482874_-	positive regulator of late gene transcription	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|482941_484042_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|484038_484524_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001282813.1|484523_487304_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000763315.1|487296_487416_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|487430_487733_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|487787_488303_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_000046101.1|488312_489485_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_000388790.1|489587_489806_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000161708.1|490019_490742_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|490939_491347_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|491353_492973_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|492969_493575_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|493567_494476_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|494462_494822_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|494818_495397_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|495465_495912_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|495904_496336_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_001772475.1|496431_496857_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
WP_000731034.1|496856_497234_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|497238_497748_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|497728_497944_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_000868184.1|497947_498151_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673540.1|498150_498615_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000059175.1|498708_499359_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000730751.1|499362_500427_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|500443_501277_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|501419_503186_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|503185_504229_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|504277_504973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|504992_506057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|506053_507118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|507127_507346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|507441_507675_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|507686_507875_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000104130.1|510428_511289_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|511285_511870_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|511866_512094_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|512093_512327_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|512394_512736_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|512699_512900_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|512907_513417_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|513449_513692_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|513808_514441_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|514444_515470_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000902197.1|515576_515930_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
WP_001681810.1|516576_516834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681808.1|516844_517735_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000354257.1|517734_518481_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000052242.1|518782_520753_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000431675.1|520772_522077_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|522099_522795_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|522820_523615_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|523624_524692_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_000632616.1|524736_526473_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|526472_528968_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|528991_530038_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|530040_531318_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|531562_532102_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|532955_534467_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_000488995.1|534450_536040_+	DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|536203_537217_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
542447:542463	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 3
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	689392	699157	4795849	integrase,capsid	Enterobacteria_phage(50.0%)	10	679927:679940	693058:693071
679927:679940	attL	GTTAATGTTAAAAC	NA	NA	NA	NA
WP_000152561.1|689392_690883_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
WP_000772672.1|691353_692619_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000573583.1|692681_693758_-	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
693058:693071	attR	GTTTTAACATTAAC	NA	NA	NA	NA
WP_010989310.1|693754_694828_-	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
WP_000493739.1|694802_695966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214423.1|696241_696808_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000468230.1|696823_697063_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_010989311.1|697066_697927_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000556589.1|698349_698673_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
WP_015701354.1|698605_699157_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
>prophage 4
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	1355500	1361531	4795849		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|1355500_1355647_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|1355662_1355806_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_044790602.1|1356795_1358718_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.0	3.6e-299
WP_000703599.1|1358734_1358989_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|1358957_1359347_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|1360589_1361531_-	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 5
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	1596040	1605211	4795849	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1596040_1596988_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|1596971_1597703_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1597683_1597791_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|1597850_1598582_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272853.1|1598804_1600490_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_000598632.1|1600486_1601206_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1601252_1601720_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1601776_1602307_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1602478_1602937_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195338.1|1603177_1605211_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 6
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	1681102	1691609	4795849		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|1681102_1682506_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|1682683_1683577_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1683953_1685039_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|1685038_1685938_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|1685985_1686864_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|1686864_1687416_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|1687421_1688396_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1688411_1689185_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|1689189_1690269_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|1690295_1691609_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	1797909	1805143	4795849		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1797909_1798329_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|1798331_1799600_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|1800045_1800258_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|1800268_1800457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|1800717_1801902_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|1802552_1802864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|1802943_1803639_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|1803712_1805143_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 8
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	2008997	2013409	4795849		Escherichia_phage(50.0%)	7	NA	NA
WP_000281950.1|2008997_2009411_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|2009427_2010156_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|2010347_2010890_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|2011037_2011415_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|2011487_2012297_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036668.1|2012793_2012958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497459.1|2013169_2013409_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
>prophage 9
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	2194446	2267776	4795849	tail,integrase,plate,head,protease,transposase,tRNA	Burkholderia_virus(42.11%)	86	2233670:2233686	2266684:2266700
WP_000168626.1|2194446_2195721_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|2196469_2197075_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|2197179_2198685_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|2199285_2199921_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|2199920_2200613_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|2200615_2201236_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|2201239_2202298_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|2202298_2204320_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|2204312_2204891_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|2204890_2205472_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|2205548_2205989_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|2206077_2206293_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000361450.1|2206591_2206747_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_021013203.1|2206849_2207965_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|2208038_2209040_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_077949083.1|2209406_2209625_-	PTS maltose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000753325.1|2209745_2211254_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|2211356_2212532_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000066606.1|2212731_2214378_+	fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|2214545_2215949_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|2215945_2216875_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|2216950_2218252_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|2218362_2220069_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|2220221_2221373_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_000924582.1|2221489_2221789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080045.1|2221853_2222585_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|2222711_2223047_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|2223108_2224491_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|2224771_2225344_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_157727243.1|2225487_2225985_+|tail	phage tail protein	tail	A0A0F7LCR3	Escherichia_phage	45.7	7.0e-21
WP_157727242.1|2227098_2227749_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.8	3.1e-61
WP_000852584.1|2228745_2229324_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|2229316_2230420_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|2230410_2230758_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|2230814_2231342_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|2231338_2232493_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_010989167.1|2232480_2232696_-	membrane protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|2232692_2233577_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|2233576_2236042_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
2233670:2233686	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|2236135_2236273_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|2236217_2236553_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|2236650_2236932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000034292.1|2236934_2237456_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
WP_000729859.1|2237455_2238883_-|tail	tail protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_001789770.1|2238872_2239127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|2239123_2239588_-	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|2239587_2240034_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|2240035_2240374_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|2240383_2241337_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|2241351_2242467_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|2242681_2243140_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|2243142_2243964_-|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|2243944_2245441_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000167502.1|2245440_2247036_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
WP_000124060.1|2247032_2247578_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_000227700.1|2247577_2247889_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000175097.1|2247888_2248215_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|2248211_2248862_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|2248845_2249574_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|2249576_2249927_-	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|2250170_2250767_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_124682070.1|2250855_2251194_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.1	1.9e-22
WP_000990529.1|2251371_2253141_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|2253151_2254318_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|2254320_2254590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2254617_2255148_+	host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|2255436_2255709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|2255718_2256021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2256017_2256401_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000132655.1|2256393_2256609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2256605_2257289_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|2257285_2257516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|2257505_2257721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000988475.1|2257710_2258163_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
WP_001281695.1|2258134_2258524_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|2258705_2259650_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|2260176_2261706_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|2261716_2263105_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|2263279_2264314_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_001539987.1|2264448_2264619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000500278.1|2264730_2265093_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|2265079_2265409_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|2265443_2266265_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|2266533_2266785_-	acid shock protein	NA	NA	NA	NA	NA
2266684:2266700	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|2267178_2267361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502119.1|2267317_2267776_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	2709706	2787906	4795849	tail,integrase,holin,head,protease,terminase,transposase	Salmonella_phage(73.02%)	96	2761006:2761021	2801087:2801102
WP_000938184.1|2709706_2710387_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502119.1|2710594_2711053_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|2711716_2712376_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2712462_2712792_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2712788_2713070_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502119.1|2713806_2714265_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|2715396_2716608_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2716665_2716983_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000975203.1|2717027_2717444_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2717614_2718277_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2718371_2718830_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|2718865_2720920_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|2721043_2721490_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|2721508_2723662_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|2723648_2724254_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2724470_2724980_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|2725334_2726387_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|2726458_2726911_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|2727096_2728857_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2728925_2729444_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|2729543_2729711_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2729964_2730528_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2730524_2732165_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|2732169_2733423_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|2733437_2735345_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|2735357_2737466_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|2737564_2738674_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2738670_2739213_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|2739378_2740389_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|2740596_2743209_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000497443.1|2743634_2743913_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
WP_000480169.1|2744225_2744927_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|2745848_2746367_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|2746381_2747893_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|2747892_2748573_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|2748569_2749769_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|2749769_2750123_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_000564971.1|2750138_2750276_-	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
WP_001685627.1|2750363_2751119_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|2751177_2751606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|2751605_2752337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|2752531_2752867_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|2752863_2753895_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|2753897_2754200_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|2754203_2754854_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|2754853_2756806_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|2756983_2757436_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|2757439_2757880_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|2757891_2759037_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|2759040_2759604_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|2759578_2759968_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|2759954_2760509_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|2760505_2760913_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|2760878_2761247_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
2761006:2761021	attL	TCGGCAATCAGTTTAT	NA	NA	NA	NA
WP_000627464.1|2761288_2762230_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|2762241_2762739_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|2762743_2763976_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|2763990_2764728_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|2764612_2766082_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|2766081_2767485_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|2767450_2768203_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|2768292_2768520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|2768616_2768994_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001075998.1|2769571_2770186_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|2770185_2770467_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|2770453_2770843_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|2771059_2771509_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2771644_2771770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|2772168_2772966_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2772955_2773102_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|2773098_2773710_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|2773918_2774521_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001574100.1|2774560_2774866_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
WP_001217670.1|2774855_2775095_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|2775279_2775777_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|2775787_2775967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989139.1|2776209_2776371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001220318.1|2776452_2776719_-	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
WP_000208074.1|2776812_2777385_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000445792.1|2777388_2777862_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|2777861_2778386_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|2778382_2778730_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|2778740_2779490_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|2779492_2780476_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|2780560_2780935_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|2780900_2781137_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|2781266_2781671_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|2781959_2782160_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|2782250_2782547_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|2782552_2783338_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|2783334_2784015_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|2784092_2785157_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|2785153_2786035_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|2786040_2786280_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|2786320_2786569_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|2786613_2787906_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
2801087:2801102	attR	ATAAACTGATTGCCGA	NA	NA	NA	NA
>prophage 11
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	2859044	2866356	4795849	integrase,protease	Ralstonia_phage(16.67%)	7	2853913:2853927	2865092:2865106
2853913:2853927	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2859044_2859422_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2859583_2859781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|2859992_2862269_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|2862299_2862620_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2862943_2863165_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|2863294_2865241_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2865092:2865106	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|2865237_2866356_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 12
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	3478947	3566108	4795849	tail,plate,tRNA	Salmonella_phage(40.0%)	66	NA	NA
WP_000118732.1|3478947_3480291_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001007105.1|3480294_3480831_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000312802.1|3480897_3481383_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001171575.1|3481619_3482045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001147174.1|3482016_3482418_-	BPSL0067 family protein	NA	NA	NA	NA	NA
WP_000996818.1|3484002_3484545_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175184.1|3484608_3484899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000449770.1|3484984_3487648_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.8	9.8e-77
WP_000806676.1|3488015_3488918_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_000750542.1|3488904_3489729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000108006.1|3489725_3490220_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371495.1|3490235_3492119_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000145233.1|3492115_3493111_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_001670675.1|3494705_3495437_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
WP_000917872.1|3495500_3495968_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801233.1|3495964_3496687_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052766.1|3496721_3497477_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|3497548_3498916_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
WP_000207227.1|3498971_3499742_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230964.1|3499819_3500620_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001127546.1|3500751_3501927_-	MFS transporter	NA	NA	NA	NA	NA
WP_000648539.1|3502031_3502946_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154870.1|3502966_3503770_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.4	2.7e-38
WP_001235094.1|3509801_3512375_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_000992642.1|3512504_3513236_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|3513232_3514213_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197667.1|3514344_3515082_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|3515353_3515692_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|3515795_3515843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200079.1|3515942_3517103_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210976.1|3517063_3517972_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|3518029_3519151_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|3519160_3520231_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212373.1|3520670_3521189_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030993.1|3521181_3522402_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|3522558_3522906_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469802.1|3522946_3523714_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|3523758_3524307_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|3524325_3524574_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|3524917_3526279_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|3526444_3527236_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|3527255_3528542_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|3528662_3529220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|3529301_3529892_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|3530015_3530894_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|3530979_3532641_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|3532789_3533128_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|3533293_3533584_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|3533573_3534050_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|3534199_3534682_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237649.1|3535301_3546176_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
WP_000533850.1|3546239_3547649_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|3547645_3549802_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|3549833_3550997_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000151542.1|3551539_3552313_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000972389.1|3552716_3552935_-	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|3553025_3554126_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|3554122_3554608_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282793.1|3554604_3557682_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000763311.1|3557674_3557794_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|3557808_3558111_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|3558165_3558681_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_000046142.1|3558690_3559863_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_000905046.1|3560005_3560572_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_001221113.1|3561255_3562371_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_001111827.1|3562451_3566108_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 13
NZ_LT904852	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, chromosome: 1	4795849	3883865	3927568	4795849	tRNA,bacteriocin,protease,transposase	Bacillus_virus(25.0%)	48	NA	NA
WP_000502119.1|3883865_3884324_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|3884513_3885593_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|3885694_3886858_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|3886879_3887926_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|3888299_3888725_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|3888750_3889329_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|3889329_3890037_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000367758.1|3890018_3890702_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|3890695_3891352_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|3891456_3891915_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000098658.1|3892103_3894095_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|3894370_3895129_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|3895229_3896150_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|3896377_3898354_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|3898362_3898494_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001803086.1|3898788_3899088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|3899143_3900298_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001113171.1|3900790_3902185_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_000856775.1|3902263_3902761_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|3902856_3903564_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|3903640_3904372_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|3904391_3905339_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|3905554_3906118_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|3906117_3906534_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|3906580_3907267_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|3907396_3908377_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|3908394_3909099_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|3909117_3909684_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|3909680_3909971_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|3909978_3910572_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|3910564_3911701_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|3911791_3912799_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|3912931_3913978_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|3914296_3914755_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|3914877_3915597_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|3915646_3915973_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|3915972_3916692_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|3916846_3917899_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|3917926_3918202_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|3918314_3919400_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|3919616_3920873_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|3923483_3924191_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001681938.1|3924532_3924817_+	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_071525158.1|3925166_3925346_+	type VI secretion system protein	NA	NA	NA	NA	NA
WP_010989236.1|3926100_3926397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001141622.1|3926466_3926784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000768134.1|3926780_3927047_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|3927289_3927568_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 1
NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	106704	189	47964	106704	terminase,tail	Salmonella_phage(94.12%)	53	NA	NA
WP_001009195.1|189_672_+	hypothetical protein	NA	J9Q805	Salmonella_phage	96.9	5.5e-87
WP_000234274.1|1303_1531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072873.1|1615_2266_-	hypothetical protein	NA	J9Q754	Salmonella_phage	100.0	1.4e-114
WP_011011101.1|2588_2897_-	periplasmic protein	NA	NA	NA	NA	NA
WP_000182009.1|2900_3428_-	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	96.6	4.1e-80
WP_000683475.1|3432_3855_-	hypothetical protein	NA	J9Q806	Salmonella_phage	85.7	8.2e-63
WP_001291547.1|3914_4193_-	hypothetical protein	NA	J9Q7T9	Salmonella_phage	98.9	3.4e-41
WP_000218382.1|4195_5755_-	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.4	5.7e-295
WP_011011100.1|5819_6518_+	ParB N-terminal domain-containing protein	NA	J9Q756	Salmonella_phage	99.6	1.9e-125
WP_000164561.1|6517_7186_+	ParB N-terminal domain-containing protein	NA	J9Q6L1	Salmonella_phage	99.5	1.1e-114
WP_000049963.1|7182_7821_+	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	99.1	5.5e-111
WP_001113021.1|7813_8068_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	98.8	4.1e-41
WP_011011099.1|8064_8964_+	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.3	4.0e-168
WP_000176291.1|8973_9240_+	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
WP_000215412.1|9435_10077_+	DNA-binding protein	NA	J9Q6D4	Salmonella_phage	99.5	1.8e-109
WP_001007302.1|10079_11336_+|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	99.8	5.3e-251
WP_000423989.1|11369_12944_+	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.0	3.2e-301
WP_001055287.1|12966_13863_+	hypothetical protein	NA	J9Q7F4	Salmonella_phage	96.6	5.7e-146
WP_001130336.1|13889_14765_+	hypothetical protein	NA	J9Q710	Salmonella_phage	100.0	3.8e-163
WP_001115046.1|14839_15763_+	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	100.0	3.3e-157
WP_000801184.1|15806_16241_+	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	100.0	2.1e-74
WP_000057119.1|16240_17074_+	hypothetical protein	NA	J9Q7R2	Salmonella_phage	100.0	2.6e-153
WP_001027662.1|17171_17516_+	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
WP_000523626.1|17506_17980_+	hypothetical protein	NA	J9Q711	Salmonella_phage	100.0	2.3e-82
WP_000469441.1|17981_18365_+	hypothetical protein	NA	J9Q6D8	Salmonella_phage	100.0	1.7e-67
WP_000072376.1|18439_19186_+	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	96.8	7.8e-125
WP_000163862.1|19245_19563_+	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
WP_002228782.1|19643_19913_+	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	8.4e-37
WP_044790579.1|19920_24504_+	tape measure protein	NA	J9Q712	Salmonella_phage	92.9	0.0e+00
WP_000440566.1|24545_24881_+|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
WP_072075016.1|24937_25669_+|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	3.3e-136
WP_000528167.1|25661_26459_+|tail	tail protein	tail	J9Q7R4	Salmonella_phage	95.8	1.2e-155
WP_001293197.1|26446_27034_+|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	92.3	1.1e-102
WP_011011097.1|27048_31437_+	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	86.7	0.0e+00
WP_044790583.1|31519_34072_+|tail	tail fiber domain-containing protein	tail	A0A0A0YQM3	Citrobacter_virus	52.5	1.4e-152
WP_000064174.1|34186_34510_+	hypothetical protein	NA	J9Q6E7	Salmonella_phage	97.2	2.7e-50
WP_000856755.1|34523_35216_+	hypothetical protein	NA	J9Q7Y7	Salmonella_phage	95.7	1.1e-125
WP_011011096.1|35284_35629_+	hypothetical protein	NA	J9Q7G2	Salmonella_phage	83.6	5.9e-27
WP_001287064.1|35679_36231_-	hypothetical protein	NA	A0A2H4J5U3	uncultured_Caudovirales_phage	39.8	7.8e-29
WP_000161333.1|36561_37227_+	AAA family ATPase	NA	J9Q7R7	Salmonella_phage	95.0	8.0e-113
WP_000062815.1|37226_37586_+	hypothetical protein	NA	J9Q7G3	Salmonella_phage	100.0	2.3e-45
WP_000966077.1|37634_38390_+	DUF2971 domain-containing protein	NA	J9Q7Y9	Salmonella_phage	43.0	3.2e-57
WP_001238819.1|38459_39515_-	hypothetical protein	NA	A0A2I7RNF6	Vibrio_phage	42.6	5.1e-61
WP_000078184.1|39792_40518_+	hypothetical protein	NA	J9Q7R8	Salmonella_phage	98.3	2.4e-139
WP_011011095.1|40578_41919_+	AAA family ATPase	NA	J9Q7G4	Salmonella_phage	99.6	3.8e-247
WP_011011094.1|41981_43193_+	hypothetical protein	NA	J9Q720	Salmonella_phage	96.5	6.6e-214
WP_000642525.1|44428_45223_+	hypothetical protein	NA	J9Q7Z0	Salmonella_phage	96.2	4.9e-141
WP_011011093.1|45523_45781_+	hypothetical protein	NA	J9Q7R9	Salmonella_phage	92.9	4.9e-34
WP_000413053.1|45815_47138_+	DNA ligase	NA	J9Q7G5	Salmonella_phage	98.4	5.8e-256
WP_000901956.1|47137_47314_+	hypothetical protein	NA	J9Q729	Salmonella_phage	96.6	2.6e-23
WP_011011092.1|47303_47510_+	hypothetical protein	NA	J9Q6I3	Salmonella_phage	98.5	8.1e-32
WP_044790586.1|47509_47662_+	hypothetical protein	NA	J9Q7Z1	Salmonella_phage	96.0	7.6e-19
WP_000067984.1|47658_47964_+	hypothetical protein	NA	J9Q7S1	Salmonella_phage	98.0	9.2e-48
>prophage 2
NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	106704	51782	106688	106704	integrase	Salmonella_phage(89.06%)	70	52179:52194	85391:85406
WP_011011090.1|51782_52616_+	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	65.1	2.4e-90
52179:52194	attL	GAAGATCTGGGCTTCC	NA	NA	NA	NA
WP_000159906.1|52625_52829_+	hypothetical protein	NA	A0A0B6VT64	Edwardsiella_phage	49.2	4.4e-06
WP_000131231.1|52844_53225_+	hypothetical protein	NA	Q716B1	Shigella_phage	67.2	6.7e-40
WP_000869626.1|53224_53470_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	41.6	2.1e-10
WP_001117719.1|53634_54126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000798892.1|54386_55493_+|integrase	site-specific integrase	integrase	A0A1P8DTG6	Proteus_phage	32.2	2.1e-25
WP_000224608.1|55484_55871_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000790461.1|56132_56345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044790587.1|56454_58812_+	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	90.7	0.0e+00
WP_000127343.1|58908_60144_+	AAA domain-containing protein	NA	J9Q733	Salmonella_phage	99.5	1.8e-238
WP_000645855.1|60324_63843_+	DNA polymerase III subunit alpha	NA	J9Q7Z2	Salmonella_phage	99.1	0.0e+00
WP_001031298.1|63839_64283_+	hypothetical protein	NA	J9Q7S4	Salmonella_phage	97.9	3.0e-71
WP_000459729.1|64376_64967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000102109.1|65212_65644_+	hypothetical protein	NA	J9Q6I8	Salmonella_phage	100.0	4.0e-73
WP_000045710.1|65763_66792_+	hypothetical protein	NA	J9Q7Z3	Salmonella_phage	98.8	1.1e-164
WP_001108398.1|66852_67797_+	exonuclease	NA	J9Q7S6	Salmonella_phage	99.4	6.8e-182
WP_000920226.1|67796_68063_+	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
WP_001051805.1|68065_69142_+	recombinase	NA	J9Q736	Salmonella_phage	99.7	5.5e-204
WP_000589750.1|69233_69434_+	hypothetical protein	NA	J9Q6J0	Salmonella_phage	93.9	9.3e-25
WP_000715582.1|69437_70280_+	hypothetical protein	NA	J9Q7Z4	Salmonella_phage	97.1	2.3e-125
WP_000801005.1|70442_70814_+	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	98.4	3.0e-69
WP_000737807.1|70797_71208_+	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.1	1.4e-75
WP_000699340.1|71276_71552_+	hypothetical protein	NA	J9Q738	Salmonella_phage	96.7	5.9e-46
WP_000859650.1|71592_71898_+	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	90.8	4.9e-33
WP_011011087.1|71897_72101_+	hypothetical protein	NA	J9Q7S8	Salmonella_phage	94.3	4.0e-31
WP_154080930.1|72283_72424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001293470.1|72629_73685_-	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.0	1.5e-185
WP_000364575.1|74429_75074_+	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	2.4e-122
WP_001288958.1|75149_75644_+	GNAT family N-acetyltransferase	NA	J9Q6J3	Salmonella_phage	97.6	2.3e-88
WP_000832167.1|75675_76179_-	hypothetical protein	NA	J9Q7Z6	Salmonella_phage	98.2	5.5e-90
WP_000174806.1|76407_77493_+	exonuclease SbcCD subunit D	NA	J9Q7S9	Salmonella_phage	98.9	2.7e-206
WP_000107766.1|77489_77726_+	hypothetical protein	NA	J9Q7H1	Salmonella_phage	98.4	1.1e-29
WP_000670362.1|77722_79639_+	AAA family ATPase	NA	J9Q741	Salmonella_phage	98.6	0.0e+00
WP_000009516.1|79628_80375_+	hypothetical protein	NA	J9Q6J5	Salmonella_phage	98.0	4.4e-136
WP_000047571.1|80387_80957_+	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	99.5	1.7e-103
WP_000623686.1|81034_83350_+	ribonucleoside-diphosphate reductase subunit alpha	NA	J9Q7T0	Salmonella_phage	99.7	0.0e+00
WP_011011111.1|83457_84600_+	ribonucleotide-diphosphate reductase subunit beta	NA	J9Q7H3	Salmonella_phage	99.5	2.4e-218
WP_000673231.1|84682_85612_+	hypothetical protein	NA	J9Q742	Salmonella_phage	99.0	3.8e-161
85391:85406	attR	GAAGATCTGGGCTTCC	NA	NA	NA	NA
WP_011011110.1|85727_86843_+	thymidylate synthase	NA	J9Q6J6	Salmonella_phage	98.1	7.6e-217
WP_006812548.1|86844_87258_+	hypothetical protein	NA	J9Q7Z8	Salmonella_phage	97.8	4.7e-71
WP_000781812.1|87254_87731_+	dihydrofolate reductase	NA	J9Q7T1	Salmonella_phage	100.0	1.4e-90
WP_000386471.1|87730_88375_+	AAA family ATPase	NA	J9Q7H4	Salmonella_phage	100.0	5.2e-117
WP_000564632.1|88438_88858_+	hypothetical protein	NA	J9Q743	Salmonella_phage	98.6	2.9e-68
WP_000208226.1|88867_89425_+	3'-5' exonuclease	NA	J9Q6J8	Salmonella_phage	99.5	7.0e-102
WP_011011109.1|89469_90396_+	hypothetical protein	NA	J9Q7Z9	Salmonella_phage	85.4	4.1e-107
WP_000559567.1|90581_91175_+	phage N-6-adenine-methyltransferase	NA	J9Q7T2	Salmonella_phage	99.5	4.6e-112
WP_000262979.1|91377_91608_+	hypothetical protein	NA	J9Q7H5	Salmonella_phage	100.0	2.1e-36
WP_011011108.1|92193_92802_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	99.5	2.2e-117
WP_024134091.1|92944_93439_+	hypothetical protein	NA	J9Q6J9	Salmonella_phage	96.3	1.9e-79
WP_000872126.1|93448_93637_+	hypothetical protein	NA	J9Q800	Salmonella_phage	100.0	1.2e-26
WP_000462606.1|93745_94588_+	hypothetical protein	NA	J9Q7T3	Salmonella_phage	71.1	2.1e-70
WP_000333240.1|94696_95269_+	hypothetical protein	NA	J9Q7H6	Salmonella_phage	98.9	8.2e-98
WP_011011107.1|95392_97096_+	DUF4942 domain-containing protein	NA	J9Q747	Salmonella_phage	98.9	0.0e+00
WP_001291673.1|97154_97844_+	hypothetical protein	NA	J9Q6K2	Salmonella_phage	98.3	6.1e-124
WP_000766011.1|98124_98496_+	hypothetical protein	NA	J9Q7T4	Salmonella_phage	100.0	3.2e-63
WP_000086990.1|98587_99229_+	HD domain-containing protein	NA	J9Q7H7	Salmonella_phage	100.0	9.7e-116
WP_000861921.1|99225_99768_+	hypothetical protein	NA	J9Q748	Salmonella_phage	93.1	2.6e-93
WP_011011105.1|99776_100088_+	hypothetical protein	NA	A0A1B5FPC7	Escherichia_phage	56.9	3.0e-14
WP_000218758.1|100084_100372_+	hypothetical protein	NA	A5VWB2	Enterobacteria_phage	58.8	9.9e-28
WP_000860613.1|100432_100636_-	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	95.5	1.5e-30
WP_011011104.1|100809_101091_+	hypothetical protein	NA	J9Q7T5	Salmonella_phage	71.6	3.2e-31
WP_000916329.1|101175_101493_+	hypothetical protein	NA	J9Q750	Salmonella_phage	80.0	8.1e-47
WP_000132517.1|101502_102693_+	hypothetical protein	NA	J9Q803	Salmonella_phage	54.6	5.4e-120
WP_011011103.1|104129_104375_-	hypothetical protein	NA	J9Q751	Salmonella_phage	92.5	5.8e-37
WP_000276519.1|104517_104733_+	hypothetical protein	NA	J9Q6K7	Salmonella_phage	95.8	4.5e-33
WP_000594283.1|104743_104962_+	hypothetical protein	NA	J9Q804	Salmonella_phage	98.6	6.4e-35
WP_000559556.1|105056_105371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000786235.1|105447_105759_+	hypothetical protein	NA	J9Q7T7	Salmonella_phage	92.2	1.1e-45
WP_000218787.1|105887_106280_+	hypothetical protein	NA	J9Q7I1	Salmonella_phage	65.4	1.7e-41
WP_011011102.1|106400_106688_+	hypothetical protein	NA	J9Q753	Salmonella_phage	94.6	1.5e-47
