The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	739049	775161	4783440	bacteriocin,protease,tRNA,transposase,integrase	Acinetobacter_phage(33.33%)	39	728682:728696	762439:762453
728682:728696	attL	CCATGCCAGCATCAA	NA	NA	NA	NA
WP_000421096.1|739049_739328_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000768134.1|739570_739837_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001141622.1|739833_740151_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014341481.1|741271_741616_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_001681938.1|741800_742085_-	DUF4102 domain-containing protein	NA	A0A0P0IRB7	Acinetobacter_phage	35.2	3.2e-10
WP_000234466.1|742426_743134_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001049802.1|745744_747001_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000976287.1|747217_748303_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_000091706.1|748415_748691_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_001148958.1|748718_749771_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000786887.1|749925_750645_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001107559.1|750644_750971_+	YggL family protein	NA	NA	NA	NA	NA
WP_000984827.1|751020_751740_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_000502119.1|751862_752321_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000394189.1|752639_753686_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000252198.1|753818_754826_+	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_001096530.1|754916_756053_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001174773.1|756045_756639_-	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001277205.1|756646_756937_-	YggU family protein	NA	NA	NA	NA	NA
WP_001094848.1|756933_757500_-	YggT family protein	NA	NA	NA	NA	NA
WP_000997790.1|757518_758223_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001055657.1|758240_759221_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000098333.1|759350_760037_+	global regulatory protein	NA	NA	NA	NA	NA
WP_001285491.1|760083_760500_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001053167.1|760499_761063_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000593242.1|761278_762226_-	glutathione synthase	NA	NA	NA	NA	NA
WP_001800534.1|762245_762977_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
762439:762453	attR	TTGATGCTGGCATGG	NA	NA	NA	NA
WP_000286121.1|763053_763761_-	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_000856775.1|763856_764354_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_001113171.1|764432_765827_-	galactose/proton symporter	NA	NA	NA	NA	NA
WP_001062140.1|766319_767474_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_001803086.1|767529_767829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905074.1|767825_767990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000729109.1|768123_768255_+	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_001278580.1|768263_770240_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000105550.1|770467_771388_+	agmatinase	NA	NA	NA	NA	NA
WP_000701830.1|771488_772247_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000098658.1|772522_774514_+	transketolase	NA	NA	NA	NA	NA
WP_000502119.1|774702_775161_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	1047591	1113582	4783440	tRNA,tail	Salmonella_phage(41.18%)	53	NA	NA
WP_000047238.1|1047591_1050222_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	3.5e-79
WP_000906486.1|1050456_1050642_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_000271296.1|1052040_1052607_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.6	7.2e-14
WP_001279499.1|1052603_1053029_+	DedA family protein	NA	NA	NA	NA	NA
WP_000611827.1|1053105_1054662_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_001130194.1|1054811_1055327_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000645128.1|1055672_1057043_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_001187289.1|1057091_1058630_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA	NA
WP_001275597.1|1058646_1059819_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA	NA
WP_000378431.1|1059945_1060476_-	transcriptional repressor MprA	NA	NA	NA	NA	NA
WP_000165770.1|1060972_1062157_-	MFS transporter	NA	NA	NA	NA	NA
WP_001216613.1|1062321_1063317_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
WP_000775015.1|1063386_1064451_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA	NA
WP_000777898.1|1065999_1066959_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.8	4.0e-129
WP_000201426.1|1066969_1069114_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.0	3.5e-194
WP_001275403.1|1069086_1069497_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
WP_000028873.1|1069493_1069739_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA	NA
WP_000209805.1|1070010_1070442_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_001519557.1|1071948_1072275_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_000281304.1|1072436_1072787_+	YgaC family protein	NA	NA	NA	NA	NA
WP_000492647.1|1072821_1073271_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_001051100.1|1073969_1074371_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
WP_000022010.1|1074719_1075247_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_000137417.1|1075256_1075556_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000508175.1|1075738_1075897_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_000126152.1|1076467_1077145_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_001095643.1|1078716_1080000_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.4	1.2e-32
WP_001176534.1|1080014_1081463_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000271916.1|1081484_1082753_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_000993092.1|1082778_1083756_-	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_000382024.1|1084058_1085573_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_001574835.1|1085583_1086018_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_000744418.1|1086029_1086839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_001237936.1|1086993_1087668_+	transcriptional regulator TctD	NA	NA	NA	NA	NA
WP_000872343.1|1087654_1089070_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000947097.1|1089310_1090216_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000701509.1|1090937_1091834_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000178741.1|1092127_1093057_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA	NA
WP_001801692.1|1093573_1094626_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA	NA
WP_001682025.1|1095647_1097828_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_000274373.1|1097887_1098805_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001239947.1|1098836_1100081_-	esterase family protein	NA	NA	NA	NA	NA
WP_001111827.1|1100190_1103847_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
WP_001221113.1|1103927_1105043_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000905046.1|1105726_1106293_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|1106435_1107608_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|1107617_1108133_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|1108187_1108490_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|1108504_1108624_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|1108616_1111694_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|1111690_1112176_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|1112172_1113273_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972389.1|1113363_1113582_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
>prophage 3
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	1799985	1807297	4783440	protease,integrase	Dickeya_phage(16.67%)	7	1801236:1801250	1812415:1812429
WP_001201759.1|1799985_1801104_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_000125880.1|1801100_1803047_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1801236:1801250	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|1803176_1803398_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1803721_1804042_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934058.1|1804072_1806349_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_001117984.1|1806560_1806758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|1806919_1807297_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
1812415:1812429	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 4
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	1878435	1920493	4783440	tail,plate,head,holin,terminase	Salmonella_phage(79.25%)	60	NA	NA
WP_001262313.1|1878435_1879728_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
WP_000065276.1|1879772_1880021_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001754984.1|1880061_1880301_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_010989138.1|1880306_1881188_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_000034527.1|1881184_1882249_-	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_000187053.1|1882326_1883007_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_001764962.1|1883003_1883789_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000995349.1|1883794_1884091_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_000186242.1|1884181_1884382_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_001009036.1|1884670_1885075_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000869365.1|1885204_1885441_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001574095.1|1885406_1885781_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_001681803.1|1885865_1886849_+	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_000800010.1|1886851_1887601_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113623.1|1887611_1887959_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000065105.1|1887955_1888480_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000445792.1|1888479_1888953_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000208074.1|1888956_1889529_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
WP_000509711.1|1890374_1890554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000963896.1|1890564_1891062_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001217670.1|1891246_1891486_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000929790.1|1891820_1892423_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001096560.1|1892631_1893243_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_001617856.1|1893239_1893386_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047634.1|1893375_1894173_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|1894571_1894697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|1894832_1895282_-	lipoprotein	NA	NA	NA	NA	NA
WP_001294876.1|1895498_1895888_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000226307.1|1895874_1896156_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001075998.1|1896155_1896770_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000495544.1|1897347_1897725_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001070544.1|1897821_1898049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001118118.1|1898138_1898891_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_000204794.1|1898856_1900260_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_000113511.1|1900259_1901729_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_138010671.1|1901613_1902351_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000873182.1|1902365_1903598_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_000128060.1|1903602_1904100_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000627464.1|1904111_1905053_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_001040702.1|1905094_1905463_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_001125675.1|1905428_1905836_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_000008737.1|1905832_1906387_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001142488.1|1906373_1906763_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000389379.1|1906737_1907301_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001135544.1|1907304_1908450_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000257259.1|1908461_1908902_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_000389047.1|1908905_1909358_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000990867.1|1909535_1911488_+	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000346974.1|1911487_1912138_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000388505.1|1912141_1912444_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000042301.1|1912446_1913478_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000826019.1|1913474_1913810_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000050472.1|1914004_1914736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144794.1|1914735_1915164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001685627.1|1915222_1915978_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001270647.1|1916218_1916572_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001197092.1|1916572_1917772_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_000049938.1|1917768_1918449_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001681975.1|1918448_1919960_+	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000421106.1|1919974_1920493_+|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
>prophage 5
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	2398563	2472161	4783440	protease,tRNA,plate,transposase,capsid,integrase,tail	Burkholderia_virus(38.1%)	88	2388893:2388908	2444766:2444781
2388893:2388908	attL	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000502118.1|2398563_2399022_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000431187.1|2398978_2399161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001766314.1|2399554_2399806_+	acid shock protein	NA	NA	NA	NA	NA
WP_000549642.1|2400074_2400896_+|protease	serine protease	protease	NA	NA	NA	NA
WP_001183821.1|2400930_2401260_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000500278.1|2401246_2401609_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001118268.1|2402025_2403060_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000014056.1|2403234_2404623_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001219360.1|2404633_2406163_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000769298.1|2406689_2407634_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001281695.1|2407815_2408205_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_001315282.1|2408176_2408626_-	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_010989166.1|2408618_2408834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000631816.1|2408823_2409054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|2409050_2409734_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_153781233.1|2409730_2409931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|2409938_2410322_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_000197790.1|2410318_2410621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000632575.1|2410630_2410903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|2411191_2411722_-	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000843446.1|2411749_2412019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000960673.1|2412021_2413188_-	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000990529.1|2413198_2414968_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000567456.1|2414971_2415136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001765083.1|2415145_2415577_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_100208317.1|2415572_2416169_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000793143.1|2416412_2416763_+	membrane protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_001104436.1|2416765_2417494_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000264664.1|2417477_2418128_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_000175097.1|2418124_2418451_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000227700.1|2418450_2418762_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
WP_000124060.1|2418761_2419307_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_170825686.1|2419357_2420899_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000090679.1|2420898_2422395_+	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_000117561.1|2422375_2423197_+|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000135517.1|2423199_2423658_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_001273072.1|2423872_2424988_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_001286905.1|2425002_2425956_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_000537457.1|2425965_2426304_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_000271668.1|2426305_2426752_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_001101804.1|2426751_2427216_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000666498.1|2427215_2427467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729859.1|2427456_2428884_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_162828734.1|2428880_2429405_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000110118.1|2429407_2429689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000084228.1|2429786_2430122_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001148841.1|2430066_2430204_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000135574.1|2430297_2432763_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
WP_000458383.1|2432762_2433647_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000478221.1|2433646_2433859_+|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000808000.1|2433846_2435001_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000148263.1|2434997_2435525_+|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000859114.1|2435581_2435929_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_001219103.1|2435919_2437023_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000852584.1|2437015_2437594_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_000002044.1|2437596_2438562_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	52.9	1.5e-59
WP_024134057.1|2438572_2439034_+|tail	tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	53.9	5.9e-38
WP_024131174.1|2439044_2439521_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_001057643.1|2439527_2440145_-|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_001802272.1|2440144_2440648_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_024131175.1|2440658_2441192_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	58.8	2.8e-44
WP_001165548.1|2441263_2441836_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_000412353.1|2442116_2443499_+	amino acid permease	NA	NA	NA	NA	NA
WP_000524877.1|2443560_2443896_-	GlpM family protein	NA	NA	NA	NA	NA
WP_001080045.1|2444022_2444754_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000824321.1|2445234_2446386_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
2444766:2444781	attR	GATTTTACCTGCCTTT	NA	NA	NA	NA
WP_000928668.1|2446538_2448245_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001681605.1|2448355_2449657_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000092483.1|2449732_2450662_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_000259129.1|2450658_2452062_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000066606.1|2452229_2453876_-	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_001170615.1|2454075_2455251_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000753325.1|2455353_2456862_+	YdgA family protein	NA	NA	NA	NA	NA
WP_000565566.1|2457567_2458569_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_000998242.1|2458642_2459683_-	oxidoreductase	NA	NA	NA	NA	NA
WP_031608772.1|2459890_2460016_+	division septum protein Blr	NA	NA	NA	NA	NA
WP_000217946.1|2460314_2460530_+	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_000214061.1|2460618_2461059_+	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000133179.1|2461135_2461717_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_001092600.1|2461716_2462295_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000915581.1|2462287_2464309_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_000231887.1|2464309_2465368_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000920820.1|2465371_2465992_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_001289628.1|2465994_2466687_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_001030324.1|2466686_2467322_+	endonuclease III	NA	NA	NA	NA	NA
WP_000100913.1|2467922_2469428_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_000765713.1|2469532_2470138_+	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000168626.1|2470886_2472161_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 6
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	2653198	2657610	4783440		Escherichia_phage(50.0%)	7	NA	NA
WP_000497459.1|2653198_2653438_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
WP_001036668.1|2653649_2653814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001529135.1|2654310_2655120_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|2655192_2655570_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2655717_2656260_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001766395.1|2656451_2657180_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000281950.1|2657196_2657610_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 7
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	2861463	2868697	4783440		Morganella_phage(33.33%)	8	NA	NA
WP_001157299.1|2861463_2862894_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377043.1|2862967_2863663_-	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_000107435.1|2863742_2864054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|2864704_2865889_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_024131163.1|2866149_2866338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208507.1|2866348_2866561_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_000457648.1|2867006_2868275_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000394197.1|2868277_2868697_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 8
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	2974997	2985504	4783440		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126347.1|2974997_2976311_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565909.1|2976337_2977417_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000648783.1|2977421_2978195_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018220.1|2978210_2979185_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973711.1|2979190_2979742_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000857536.1|2979742_2980621_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_001023656.1|2980668_2981568_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000697846.1|2981567_2982653_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|2983029_2983923_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111852.1|2984100_2985504_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 9
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	3061395	3070566	4783440	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195338.1|3061395_3063429_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703137.1|3063669_3064128_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|3064299_3064830_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|3064886_3065354_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598632.1|3065400_3066120_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272853.1|3066116_3067802_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
WP_001240415.1|3068024_3068756_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|3068815_3068923_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|3068903_3069635_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|3069618_3070566_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 10
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	3305073	3311104	4783440		Salmonella_virus(50.0%)	6	NA	NA
WP_000377769.1|3305073_3306015_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
WP_001682026.1|3307257_3307647_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000703599.1|3307615_3307870_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400611.1|3307886_3309809_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_106417236.1|3310798_3310942_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_106417237.1|3310957_3311104_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
>prophage 11
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	3969602	3977273	4783440	integrase	Enterobacteria_phage(33.33%)	7	3964079:3964092	3975482:3975495
3964079:3964092	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
WP_000468230.1|3969602_3969842_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
WP_000214423.1|3969857_3970424_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
WP_000493739.1|3970699_3971863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700163.1|3971852_3972911_+	serine/threonine protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
WP_000573583.1|3972907_3973984_+	serine/threonine protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
WP_000772672.1|3974046_3975312_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
WP_000152561.1|3975782_3977273_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	36.1	4.0e-11
3975482:3975495	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
>prophage 12
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	4116236	4195162	4783440	tail,plate,head,portal,capsid,lysis,integrase,terminase	Salmonella_phage(82.98%)	87	4123389:4123404	4196256:4196271
WP_000954536.1|4116236_4117496_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
WP_000975154.1|4117806_4119090_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000511749.1|4120070_4120853_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_162009227.1|4121122_4121317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193665.1|4121709_4121931_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
WP_000246267.1|4121927_4122389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989301.1|4122935_4124609_+	hypothetical protein	NA	NA	NA	NA	NA
4123389:4123404	attL	GAAGAAGACTTCTTTG	NA	NA	NA	NA
WP_010989300.1|4124689_4126975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131240.1|4127278_4127530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434168.1|4127611_4128064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050194084.1|4128243_4128732_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001143724.1|4128728_4129022_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4129448_4130462_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000488995.1|4130625_4132215_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001120833.1|4132198_4133710_-	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_001210944.1|4134563_4135103_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_000466893.1|4135347_4136625_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_000127915.1|4136627_4137674_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_010989299.1|4137697_4140193_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_050188637.1|4140192_4141929_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_000720235.1|4141973_4143041_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_001023498.1|4143050_4143845_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000467404.1|4143870_4144566_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_000431675.1|4144588_4145893_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000052242.1|4145912_4147883_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_000354257.1|4148184_4148931_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001681808.1|4148930_4149821_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001681810.1|4149831_4150089_-	YjhX family toxin	NA	NA	NA	NA	NA
WP_000027757.1|4151195_4152221_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_000052560.1|4152224_4152857_-	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102106.1|4152973_4153216_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000460852.1|4153248_4153758_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000956167.1|4153765_4153966_+	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000963479.1|4153929_4154271_+	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_001244240.1|4154338_4154572_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000785510.1|4154571_4154799_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001090717.1|4154795_4155380_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000104130.1|4155376_4156237_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001154438.1|4158790_4158979_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_001217561.1|4158990_4159224_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_000835188.1|4159319_4159538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4159547_4160612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4160608_4161673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080839.1|4161692_4162388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001681813.1|4162436_4163480_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_001098453.1|4163479_4165246_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_000216272.1|4165388_4166222_+|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_000730751.1|4166238_4167303_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000059175.1|4167306_4167957_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673540.1|4168050_4168515_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_000868184.1|4168514_4168718_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171566.1|4168721_4168937_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_001097942.1|4168917_4169427_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000731034.1|4169431_4169809_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_024131238.1|4169805_4170234_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_001039966.1|4170329_4170761_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_000343944.1|4170753_4171200_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_000993749.1|4171268_4171847_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177408.1|4171843_4172203_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000268327.1|4172189_4173098_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_001086816.1|4173090_4173696_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104806.1|4173692_4175312_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_000006337.1|4175318_4175726_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000161708.1|4175923_4176646_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000388790.1|4176859_4177078_+	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.4e-29
WP_000046101.1|4177180_4178353_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
WP_001207653.1|4178362_4178878_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_001280965.1|4178932_4179235_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_000763315.1|4179249_4179369_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_161976233.1|4179595_4182142_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	42.7	1.2e-113
WP_000980405.1|4182141_4182627_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001011750.1|4182623_4183724_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_001775272.1|4183791_4184010_+	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001039750.1|4184096_4184474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457555.1|4184693_4185968_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
WP_001222413.1|4186099_4186369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4186468_4186795_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_000022216.1|4186869_4187769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881183.1|4187842_4188751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097965.1|4188822_4190772_-	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000115421.1|4190860_4191319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4191396_4191693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4191689_4192142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4192159_4192369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4192739_4193120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020123.1|4193215_4193518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907593.1|4194241_4195162_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
4196256:4196271	attR	GAAGAAGACTTCTTTG	NA	NA	NA	NA
>prophage 13
NZ_LT905139	Salmonella enterica subsp. enterica serovar Typhi strain 2010-007898 chromosome 1	4783440	4491410	4581373	4783440	tail,protease,tRNA,plate,head,portal,transposase,capsid,lysis,integrase,terminase	Salmonella_phage(76.74%)	80	4486374:4486388	4498540:4498554
4486374:4486388	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_001012560.1|4491410_4493057_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
WP_001311244.1|4493196_4493295_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|4493920_4494973_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|4495161_4495353_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|4495368_4495938_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|4496063_4496285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|4496317_4496827_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|4496834_4497131_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|4497248_4497590_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|4497657_4497891_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|4497890_4498118_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_000104152.1|4498114_4498972_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
4498540:4498554	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|4498968_4501383_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|4501536_4501725_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|4501792_4502092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|4502200_4503079_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|4503692_4504607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185757.1|4504603_4505344_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_000518064.1|4505378_4506416_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|4506415_4508182_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|4508324_4509158_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|4509174_4510233_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|4510236_4510887_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|4510982_4511447_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_000868175.1|4511446_4511650_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
WP_000171568.1|4511653_4511869_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|4511849_4512362_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|4512363_4512741_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|4512737_4513166_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|4513261_4513693_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|4513685_4514132_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|4514200_4514779_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|4514775_4515135_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|4515121_4516030_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|4516022_4516628_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_031625033.1|4519070_4519574_-|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	71.3	2.1e-57
WP_000905046.1|4519604_4520171_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
WP_000046142.1|4520313_4521486_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
WP_001207656.1|4521495_4522011_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|4522065_4522368_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|4522382_4522502_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282793.1|4522494_4525572_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
WP_000980381.1|4525568_4526054_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|4526050_4527151_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|4527241_4527460_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_000502114.1|4529041_4529500_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_000840996.1|4529607_4529946_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA	NA
WP_001541181.1|4530052_4530901_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_000201804.1|4536880_4537732_-	glutamate racemase	NA	NA	NA	NA	NA
WP_000591414.1|4537676_4539521_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
WP_000186987.1|4539894_4540995_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_000813838.1|4541041_4541401_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_000971958.1|4541416_4542052_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_001120789.1|4542250_4543651_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
WP_001025919.1|4543633_4544551_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_001230038.1|4544834_4546211_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001575262.1|4546328_4547105_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_000935332.1|4547112_4548117_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_000800208.1|4548205_4549357_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_001005544.1|4549725_4552377_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_001192092.1|4552578_4554312_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA	NA
WP_000274601.1|4554472_4555309_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000424865.1|4555563_4556226_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	1.2e-28
WP_000374033.1|4556237_4557341_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_000108110.1|4557447_4559628_-	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_000007507.1|4559792_4560683_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_001090459.1|4560961_4562443_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_000976816.1|4562387_4563494_-	alanine racemase	NA	NA	NA	NA	NA
WP_000609328.1|4563490_4564729_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.4	5.9e-101
WP_000865256.1|4564993_4566550_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001134817.1|4566685_4567810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110811.1|4568536_4570969_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_000197208.1|4570971_4572132_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_000852811.1|4572396_4572714_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_000792797.1|4575159_4575822_+	TIGR02117 family protein	NA	NA	NA	NA	NA
WP_000715284.1|4575867_4576080_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000109394.1|4576283_4578482_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_000841337.1|4578636_4579662_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_000068796.1|4579755_4580751_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_000208240.1|4580842_4581373_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
