assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001357935.2_80_2002	NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	1	1534842-1535262	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	cas3,WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	cas3,WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|254aa|up_9|NZ_LT904891.1_1526708_1527470_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LT904891.1_1527450_1528500_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LT904891.1_1528496_1528976_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LT904891.1_1528975_1529686_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LT904891.1_1529704_1530016_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LT904891.1_1530206_1530530_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LT904891.1_1530580_1531186_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_LT904891.1_1531172_1532612_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LT904891.1_1532621_1533530_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_LT904891.1_1533780_1534827_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LT904891.1_1535346_1535640_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_LT904891.1_1535642_1536560_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_LT904891.1_1536559_1537264_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_LT904891.1_1537263_1537989_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_LT904891.1_1537998_1539057_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_LT904891.1_1539079_1539682_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_LT904891.1_1539698_1541234_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NZ_LT904891.1_1544672_1545626_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_LT904891.1_1545713_1546448_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_LT904891.1_1546523_1548236_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001357935.2_80_2002	NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	2	2395878-2395981	2	CRISPRCasFinder	no	cas3	cas3,WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,DinG	Unclear	GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	35	1	1	2395913-2395946	NZ_LT904891.1_2395967-2396000	NA	1	1	Unclear	cas3,WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,DinG	NA|115aa|up_4|NZ_LT904891.1_2388175_2388520_-,NA|155aa|down_0|NZ_LT904891.1_2397150_2397615_-,NA|38aa|down_1|NZ_LT904891.1_2398534_2398648_-,NA|31aa|down_3|NZ_LT904891.1_2400948_2401041_-	NA|402aa|up_9|NZ_LT904891.1_2379007_2380213_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|up_8|NZ_LT904891.1_2380439_2381831_+	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|570aa|up_7|NZ_LT904891.1_2381951_2383661_+	pfam05170, AsmA, AsmA family	NA|773aa|up_6|NZ_LT904891.1_2383763_2386082_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_5|NZ_LT904891.1_2386093_2387476_-	PRK11462, PRK11462, putative transporter; Provisional	NA|115aa|up_4|NZ_LT904891.1_2388175_2388520_-	NA	NA|199aa|up_3|NZ_LT904891.1_2389081_2389678_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|343aa|up_2|NZ_LT904891.1_2390748_2391777_+	COG3943, COG3943, Virulence protein [General function prediction only]	NA|46aa|up_1|NZ_LT904891.1_2392627_2392765_+	pfam01527, HTH_Tnp_1, Transposase	NA|206aa|up_0|NZ_LT904891.1_2393494_2394112_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_LT904891.1_2397150_2397615_-	NA	NA|38aa|down_1|NZ_LT904891.1_2398534_2398648_-	NA	NA|227aa|down_2|NZ_LT904891.1_2399266_2399947_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|31aa|down_3|NZ_LT904891.1_2400948_2401041_-	NA	NA|909aa|down_4|NZ_LT904891.1_2401062_2403789_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_5|NZ_LT904891.1_2404008_2404704_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_6|NZ_LT904891.1_2405209_2406112_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_7|NZ_LT904891.1_2406154_2407096_-	PRK09956, PRK09956, ISNCY family transposase	NA|248aa|down_8|NZ_LT904891.1_2407331_2408075_-	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|370aa|down_9|NZ_LT904891.1_2408061_2409171_-	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme
